RNA id: XM_039781901.1


Basic Information

Item Value
RNA id XM_039781901.1
length 2379
RNA type mRNA
GC content 0.53
exon number 10
gene id znf395b
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 9505432 ~ 9527428 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GACACACGTAGCCTACGTAGGCGAGTATCCAACCGACCGACCAACCCCCttctcccccgccccccccgGTCGACTGGAGAACCGGCAAGCGGCGGGACGAGCGCTGCAGCTCCGACGGGACGGACAGGACGGAGGTCTCCACCGAACGAGGAGGTGTGTTACTGGGCTGAGTCCCCTCATTGTGTGCAGCAGCACCATGGCAGCTATGGGACCTGAGGACAGAGTTGGAGCAGGGCCAGGCGGGACGGCAGTCTGCCAGGTGGGACTACAGGCCTGCACCGCTACAACCACGCACAACAGCAACGGGCCTGACACGCAGCAGACTCTGGTGTGTACACAGAGGCGTGTCCAGGCTGGGAAAACATTCGTGGAGAGCAGACATCACGAGAACAAAACATCCGTTCCCCCGGCACAAAGGGAGGCTGAGCGAGGCTGGAAAAACCTGGCAGCTCCCTTGGAAACTATGGGACCCACAATGCACCTCACCAATGCACCAGCTACTAGAGAGGTGCCTTACAGTTTCCGCAGCCCAGAGTCAGTGGAGATGGACGAGATCATGGCCGCCATGGTTCTGACCAGTCTGTCCTGCAGCCCCGTGGTCCAGAGCCCTCCACACACAGATCCTGTACCAGCCGGCTCATCATCGTCAGCTGACATGGAGTGTGGTGGCGGCGAGCTCTCCGACAGCGGCAGCAGCGGCTACTGGAGCTGGGACCACGGCAACGTGAGCCCCGCCCCCTCGCCGTCCGTCACTGAGATGGACGGCAGCCTTGATGAAGGCCTACAAATGGAACTGGATCAGGGAGAGGAGCTAAATGCCAAAAAGCCAAAGAGCTCTTTCAGAGGTGTGTATAAGTGTCTGTGGCCCGGTTGTGGCAAGGTGCTCACGTCTTCAGTCGGAATAAAAAGACACATCCGGGTGCTACATCTGGGtgggTCAGATCAGTCCCAGAGAGAAGAGGACTTCTACTACACCAAGATCTCCTGTGAGACTGTGGATGCCTGCTCCGTTCCAGCTCCTTTAGTTCCTCCAGCTCCTTCCCAGCAGGCTCTGGGCCAGGCTTCATCCTCTCAACTCAGCTGGGCCTCCTGCGCTTCTACTGTGGCCTCGGGGCTCCAGATCCCCCCAGATCACAGACCCAGGTCCAACTCCAGCTCCGGGGCCGGCCCGAGCAGGCCCAGTCCACTCAGCCAGTCGGCCCCCAGCAGCTTCTGGCAGATCCACTCCGAACATCTCTATCAGGCCTGTAGCCCCGTCCAGGTATCTGTGGCCTCCAAAAGCCCCGGCTGCCAGGGTTGGACCCCTTCCGCCTCCGTCTCTGGTCCCAGTAACACTCCGGTGGTGAAAGCTCGCTGTCGGTCCGTCAGTGTCGGGGAACAGTGGCTCCAGCAGAACAGGCTGCAGCCTATGAGCGCGTCGCCTTCCCGCACTCACTGCTCCTTCAGGAAGGGTCGCGGGGAGGCCAAAAAGTGCCGCAAGGTGTACGGAGTGGAGCGCAAGGACCAGTGGTGCACCGCCTGCCGCTGGAAAAAAGCCTGCCAGCGCTTCCCCGACTAAAGGCGGCAGCGCGAGCGAGAGACGGAAGACgtggatggacggatggatggatagatggatggatggatggatggatgagtgataaaaaaaaacttttaacttttatcAAAAGAGAGGATATAAATAAGGGCCCGAGAGCCGTCAAGGAAAACAACagttctgttttttgttttttgtcttacTTTTCaactctttttgtttctttcctaaaaGAAATTGCAAATGGACTTTTCTGTATCTTTGTAACTTGATCCTGAAAACTGAAGTCTGCGATGGTGCTAACTGTTGACTGACTTTGAACATGTGATGTGCTAAGCCTACAATACTCTCCTACTTTATCCAAAGGTTCATCTTTACTGCTCCTGTAGCTCCACTGTATTAGACTGCTACTTGGCTGTTTTTCCTTCATTCTAACCCTATCTTCCAGTGGTTACACGGTGGTTATGATGTACATTATATTGTGTGCTTTGAGTTACGTACAAGTATTTTataccttgtttttttttttttttaaatcgtctCTTTCCGCCCGTGTATCGGGCAGATTATCTTTTTTGGAATTTACATGTTTTTTGGCACTTTGTTGAAATATGAACTCACAAGAATAAGCTACGTTTGGTTTCGACTCAACCAAGTACCTATTTCCTTCCTGCCCATGTGTTGGCATACAACCAGTGTTAATGGTTTAATCCGTGAAGCTATGGAGTCATGGCAATGAGACTAGCATTAGGGGAATGAGTTGGTaatagcaataaaaaaaaaataaaagaggaaaTATATTGtcaaacacaaattaaaaagcACTGAGAATttgaaactta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248219 lncRNA downstream 60 9501912 ~ 9505372 (-) True G183258
TU248217 lncRNA downstream 12028 9493179 ~ 9493404 (-) True G183256
TU248155 lncRNA downstream 176909 9327400 ~ 9328523 (-) True G183213
TU248156 lncRNA downstream 178144 9325247 ~ 9327288 (-) True G183214
TU248131 lncRNA downstream 271634 9233511 ~ 9233798 (-) True G183189
TU248225 lncRNA upstream 5118 9532546 ~ 9543226 (-) False G183263
TU248226 lncRNA upstream 5118 9532546 ~ 9543226 (-) False G183263
TU248227 lncRNA upstream 5118 9532546 ~ 9543226 (-) True G183263
TU248264 lncRNA upstream 159294 9686722 ~ 9687119 (-) True G183296
TU248268 lncRNA upstream 181625 9709053 ~ 9715339 (-) True G183298
XM_039781895.1 mRNA downstream 34915 9466354 ~ 9470517 (-) False si:ch211-63o20.7
XM_039781893.1 mRNA downstream 34917 9460778 ~ 9470515 (-) True si:ch211-63o20.7
XM_039781894.1 mRNA downstream 35222 9460778 ~ 9470210 (-) False si:ch211-63o20.7
XM_039782695.1 mRNA downstream 102667 9330484 ~ 9402765 (-) True LOC120547212
XM_039781916.1 mRNA downstream 217229 9155024 ~ 9288203 (-) False disp1
XM_039782254.1 mRNA upstream 22576 9550004 ~ 9556929 (-) False paqr8
XM_039782253.1 mRNA upstream 22576 9550004 ~ 9556929 (-) True paqr8
XM_039782710.1 mRNA upstream 76060 9603488 ~ 9622711 (-) True stmn4
XM_039782325.1 mRNA upstream 326312 9853740 ~ 9855384 (-) True LOC120546991
XM_039782467.1 mRNA upstream 417437 9944865 ~ 9945741 (-) True LOC120547068
TU248116 other downstream 371960 9129573 ~ 9133472 (-) True G183176
TU247995 other downstream 718215 8783788 ~ 8787217 (-) False LOC120546397
TU247804 other downstream 1480388 8024715 ~ 8025044 (-) True G182977
TU247776 other downstream 1739046 7761565 ~ 7766386 (-) True G182952
unassigned_transcript_1032 other downstream 2472030 7033330 ~ 7033402 (-) True trnak-uuu_21
TU248390 other upstream 572175 10099603 ~ 10101061 (-) False LOC120546281
XR_005636937.1 other upstream 974492 10501920 ~ 10610625 (-) False LOC120546776
TU248535 other upstream 993289 10520717 ~ 10521410 (-) True G183528
TU248695 other upstream 1846680 11374108 ~ 11374615 (-) True G183650
unassigned_transcript_1080 other upstream 3055741 12583169 ~ 12583241 (-) True trnat-ugu_2

Expression Profile