RNA id: XM_039781905.1


Basic Information

Item Value
RNA id XM_039781905.1
length 4566
RNA type mRNA
GC content 0.48
exon number 15
gene id smek1
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 21947299 ~ 21961671 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAACCCCGTACTGACTCTGAAGGGACCCAAGATGGCTGAATACTCACAGGGGGGGCTGTTAGCCATTATCTGAGCAAGACATCGGGAATGAATGGCAAATAGCGTTGTAATGTAAAGCGTAACCTTAAAGTAATTACACGACTACAGTTTGTTGGTTTGCATATTGTTTTGGAATGCATGAATACCAGTAAGGAGAGAGTGGTCTCTCCGCGGCCCCGAGCCAGAACATGGCGGAACACTTGGGGAAGAAATAgccgctaacgctagctagctggcGCATTATTCAGACACAATTAGCTAGTAACATTGGTCCAGGGTAAACACGGTGCCTACGGTCCACAATTGTAAAATAATATTATCGCTGCACAGCTCTGGTCATTTTGCTTCAAAGGGTTGTTTAACATTGACTATATAGAGCGTAGGCAGTTAGCGTACTAGCTTGCTAGTTAACTCGGTAGGTTTTCTAGCTAACATTGCCCGCTAGCGTACAAgctgtagctaacgttactaatAATCTGGCAGATTGTTTTGGGGGCCAGATATCGTAACGGTGGGGCTTATTCTGGATAGCGTTACTCCTGTCTTAACTGTGTGATAGGACTCCGCAATATCTGTCATCCCTTGTTTTGTCGATTAACACGCTATCTAATGTTAATGCCCTCCCCACTGTAAAGTAACGTTAGACTGTCGTTAGGTTGCTACCATGATCTGTAAGATGATTTTGTGGGGCGCGTTGCCTCTAACACGAGCGATATAAGTATTGAGGCAGCTCGTTAAAATAATCAGCTATTGTAGTTGTAACTGCATAATCGATCGGGGAATCTTCCTGGATGCTCGTCCGGGTGTTCCGCTTTTAAGCTCCTTCAAAGAACTGTTGACCTGAGCTGGTTGATCCCTGACACTAGCTGGTTAAGTTAGTACTGCATTGTAGAAGTGATCAGGTGTTAACCGTGAATTGAAGTTGTGGCGTTACTGACGTTAGGTGAAGCAGGCACCCTGTAAAAGCCAAGAAGGTCCGGAAGGGGGGAACCGGTTACAACTACCTGCCAGGATGACTGACACTCGTCGACGAGTCAAAGTCTATACCCTCAATGAGGACAGACAGTGGGATGACCGTGGGACCGGGCACGTCTCCTCGGGATATGTGGAGCGTTTGAAAGGCACGTCTCTACTGGTGCGAGCAGAGAGTGATGGTTCCCTACTGCTGGAGTCCAAAATCAATCCAAACACTGCCTACCAGAAACAACAGGATACATTGATAGTATGGTCAGAGGCAGAAAATTATGATCTGGCACTCAGCTTCCAGGAGAAGGCTGGCTGTGATGAAATCTGGGAGAAAATATGCCAGGTGCAGGGAAAGGACCCATCAGTGGACATCACCCAGGATGTGGTGGACGAGTCTGAGGAGGAACGCTTTGACGACATGTCGTCGCCAGGTCTGGAGTTACCACCATGTGAACTGAACCGCTTGGAGGACCTGGCTGAGCTGGTGGCCTCCTCACTCCCATCCCCACTGCGGCGCGAGAAACTGGCACTGGCTGTGGAAAACGAGGGCTACATTCGCAAGCTTCTGGAACTGTTCCGTGTGTGTGAGGATTTGGAGAACAGAGAGGGACTGCACCACCTGTATGAAATCATTAAAGGCATCTTCCTGCTCAATCGTACTGCACTTTTTGAGGTTATGTTCTCTGAGGAGTGCATCATGGACATCATtggttgtctggagtttgatcCAGCACTCCCACAGCCAAGGCGGCATCGGGAGTTTCTAACTAAGACAGCCCGCTTTAAAGAGGTGATTCCCATCTTGGATCCTGAACTGCGTCAGAAAATACACCAGACGTATCGGGTGCAGTATATTCAGGACATGGTGCTGCCCACGCCCTCTGTTTTTGAGGAAAACATGCTGTCCACCCTGCACTCCTTCATCTTCTTCAACAAGGTGGAGATTGTGGGCATGCTACAGGACGATGAGAAGTTCCTGACAGACCTCTTTGCACAGCTAACAGATGAGGCTACAGATGACGACAAAAGACATGAACTGGTGAACTTCCTAAAGGAATTCTGTGCATTCTCACAAACGTTACAACCTCAAAACAGAGACGCCTTCTTCAAGACATTGTCAAACATGGGCATTCTACCTGCACTAGAGGTCATACTGGGAATGGATGACGTTCAGGTGCGTGGGGCAGCCACAGATATTTTCTCTTATCTGGTGGAGTACAACCCCTCCATGGTACGAGAGTTTGTCATGCAGGAGTCTCAGCAGAATGATGACGACATCCTCCTGATCAACCTGATCATAGAACACATGATCTGTGATACAGACCCAGAGCTAGGTGGAGCAGTGCAGCTGATGGGTCTGCTTCGGACTCTGGTGGACCCTGAGAACATGCTGGCTACTGCAAATaaaacagaaaaaacagagTTCCTAAGCTTCTTCTATAAGCACTGTATGCACGTCCTCTCAGCTCCCCTACTGGCCAACACCACGGAGGAAAAACCAAGCAAAGATGATTTTCAAACATCCCAGTTGCTGGCCTTGATTTTGGAGCTGCTGACATTCTGTGTTGAGCACCACACCTATCACATTAAGAACTACATCATCAACAAGGACATTCTCAGGAGGGTACTGGTGCTCACTGCTTCTCAGCACGCCTTCCTGGCACTATGTGCCCTACGCTTCATGCGGAGGATCATTGGTCTGAAGGATGAATTCTACAATCGCTACATCATGAGAAACTTTCTCTTCGAGCCTGTCATCAAGGCCTTCCTTAACAACGGCTCACGCTACAATCTTATGAACTCAGCCATCATTGAGATGTTTGAGTATGTCCGTGTGGACGTGAAGTCTCTCACAGCTCATATAGTAGAGAACTACTGGAAAGCTCTGGAGGATGTTGACTATGTCCAAACGTTCAAGGGCTTAAAGCTGCGGTATGAACAGCAACGAGAGAGGCAAGACAACCCCAAACTGGATAGCATGCGCTCCATCCTGAGAAACCACCGTTTCCGTCGTGATGCACGGACactggaggatgaagaggagatgTGGTTTAACACCGATGAGGATGACCTTGAGGATGGTGAGGCAGTGGTTCCTCCCTCTGACAAGATGAAAAGTGAGGAAGACCTCATGGAACCTATCAGCAAGTTCatggagagaaagaaatTGAAAGACACAGACGACAAAGAAGTACTGGGGAAGTCAAGCTTATCAGGCAGGCAGAACCCCAGCTTCAAGCTCTCATTCTCTGGCTCCACTAAAACCAGCCTCTCCAGCCCCCCTTCATCTGCCTCATTGAACCCAGGCTCTCCGGGATCACCAGGTTCTCCAGGCTCAGGGGCACGGAGCTCACCCTCCACCACAACCGTAACCACAAAGgGAGGTTTAGTGGGACTGGTGGACTAtcctgatgatgatgacgaggaggaggaggaagaagaggaagaggatggGGAGAGTAAAGAGGACCCTCTGCCACCTTCGAAGAAGTCCAAACTGAGTTCCTAAAGAAGCTTCGCTGTCTCAGCTTGTGCTGTGCTCGGACAGTTTCAGCGCATAGACTTTACACAGGAATCATCAAACTTGTAAACaaattgaatgaatgaaaggcACCCCTTGCCGTCAGCGGGTGGCCAACAGAGGAGCAGACGTTGAACGGATACGAAGCCTCCTCAGACTAGCCCACTTCATACAAGTGCCAATCAGGAAGCCAGGAGTGAAGAACCGTCTGAAACGTGGAGCAGACGTGTGAAAGTTGGGAGACAAGAGATCACCCTCAGACAGCATGAGACAGGTGGGAGTTTGGTTATTTAGCAACTTGAGGAAAAGaccacatacaaaaacacatgtaCATGCAAACTGAAATCCCAGAGAGCTCGCAGGCTCTGACCATAACCCACTGCCCCCCGCCCCCCACTCAGGGAAGGACATCACAGCGGCCCAAATGGGTTGGCCAATTCAGACCCAGAACCAACACTCGCACCCCCATCCCCCTGCCCAGAATTCGCCATCCTCCTTGTTTCTTTCtacttctttttctcctctgctctttctccctttctttgtctgttgctttttgtccctttttttaagTTAGTATATAGGACCAGACGGGAGGCAGCATGTGGCAAAGAGCTGTCCTTGTTGTCgtttgatgatgtcatcagtgtCGTCGTTCCTCAGCGGACGTTCTTTctctgaagagaaaaaaaagccagcAGTTTCTTCATTATTTTCTTGTTGTTCTCTATTTGTCTCTCAATctttctcctgtttttttttgtaaatgataACAAGAAAGACCTGCCTTTAAATGTTCAGGACGTTTTCAGTCCCACTTGAACAGGTTTTTAAAGACCTCAGTAGGTGAGCTAGTTTTACCCTTTTTGCCCTTTGAAACTGCAGATTTTTTGGAGAATTTGTAATCCCGTCTTGATTAAAGATTGAGTGGAATTCTAGATGTGATGAATTTTGTCAtatcttttcattttttccttTTACATGAGTGTACACTTAGTTGTTCAGAATATTTGGGACCATTAAAATGATCTTTGCTGTAA

Function

GO: NA

KEGG:

id description
K17491 SMEK, PPP4R3; protein phosphatase 4 regulatory subunit 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005637027.1 lncRNA upstream 113518 21832948 ~ 21833782 (+) True LOC120547080
XR_005636932.1 lncRNA upstream 200746 21745581 ~ 21746554 (+) True LOC120546760
TU252261 lncRNA upstream 404519 21540588 ~ 21542781 (+) True G186297
TU252179 lncRNA upstream 471996 21474552 ~ 21475304 (+) True G186220
TU252169 lncRNA upstream 598719 21347944 ~ 21348581 (+) True G186210
TU252574 lncRNA downstream 332771 22294442 ~ 22294697 (+) True G186452
TU252572 lncRNA downstream 339113 22300784 ~ 22301483 (+) False lin28b
TU252644 lncRNA downstream 573988 22535659 ~ 22537716 (+) True G186506
TU252735 lncRNA downstream 755299 22716970 ~ 22719893 (+) True G186578
TU252803 lncRNA downstream 838064 22799735 ~ 22800058 (+) True G186622
XM_039780897.1 mRNA upstream 322 21944748 ~ 21946978 (+) False erh
XM_039782589.1 mRNA upstream 3218 21938478 ~ 21944082 (+) True paplnb
XM_039782590.1 mRNA upstream 3218 21938478 ~ 21944082 (+) False paplnb
XM_039782591.1 mRNA upstream 3218 21939012 ~ 21944082 (+) False paplnb
XM_039782482.1 mRNA upstream 103744 21840353 ~ 21843556 (+) False LOC120547078
XM_039782234.1 mRNA downstream 171170 22132841 ~ 22211477 (+) True LOC120546953
XM_039782242.1 mRNA downstream 219814 22181485 ~ 22211477 (+) False LOC120546953
XM_039782237.1 mRNA downstream 220007 22181678 ~ 22211477 (+) False LOC120546953
XM_039782241.1 mRNA downstream 222239 22183910 ~ 22211477 (+) False LOC120546953
XM_039782236.1 mRNA downstream 222265 22183936 ~ 22211477 (+) False LOC120546953
TU252459 other upstream 300 21944743 ~ 21947000 (+) True erh
TU251678 other upstream 2087095 19856735 ~ 19860205 (+) False kif25
TU251521 other upstream 2299144 19634283 ~ 19648156 (+) False acp1
XR_005636889.1 other upstream 2408092 19429595 ~ 19539208 (+) False nhsl1b
TU252499 other downstream 24108 21985779 ~ 22065589 (+) True G186394
XR_005636956.1 other downstream 1616707 23578378 ~ 23589689 (+) True nfkbie
XR_005636955.1 other downstream 1616707 23578378 ~ 23588514 (+) False nfkbie
TU253325 other downstream 2117932 24079603 ~ 24083104 (+) True G186975
TU253479 other downstream 2545242 24506913 ~ 24507813 (+) True G187094

Expression Profile