RNA id: XM_039781916.1


Basic Information

Item Value
RNA id XM_039781916.1
length 5154
RNA type mRNA
GC content 0.60
exon number 12
gene id disp1
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 9155024 ~ 9288203 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAATGGTTGGTGCTTGATACATCAGCATCCGGCAAAAACTAAATTAGAGGACCAGGAATACTTTTCCTATCGCCTGTTAGTGCTCAGCGTATGTTTTTGCTTTCGTCCCCCCCGGTGGGTGCCCCATAGTTTCTTGGAGGCTACCAATGTGAGGCATTGCTGTCAGAACACAGAGTTCATCCGAATAACTTGTAACTATGAACCTGTTGCTGTGAGAAGTGTGAGAGTCTGAACGCATGAATAGATGCAGAGCATGGTCCTTTGTCATCCTTCAGAGGAGTGACAGTGTTCCTGCCAGGCCCGCTGGGAGAGGACCATATGGCCCTGAGCGACGCGTGTGGCGACCCTGTCGCCCTGAGCAACGGAGGGCACCATCCTCTCAGTGCCAACGGAAACGCCCCCCCGAACACCAGCGTGCCAGTCGGCGGCGGCCGGGACCCTTTCACCGCCGCCTCTAGTGGCGACTGCGTCGCAGCGGACGGAGACGGCGCCGTCCTATTAAAGGACGCGCCGTCCAAAGAGCAGCAGAGGTCGCACGTGGTCCAGAGAACAAGCAGGCCGAGCCAAAACGGCGGCGTGGTCAAACAGAACGGCTCCCTGAGGAGCCTTCCCCCGTCCAGATCCTCCCCCGCCGGCGTGGACTCCCAGCGGCTGGCCAAACGCCACCTCTGCTCTCCTCCcgccctctccctctccccgtCCTCGTCCTCCCCTTCTCTCCAGCCCCCGCCGCTCTGCTGCCAGCACTGTCACTTCCACCCCGCCCTGTGCTGCCCCTGTGGTCAGCCGGAGTGCCCCGGCTCCATTCCCCGCCCGGGGACCCCTTCATCCTGCCCGTGCTGCCTCTCGGCCTGCACGTACTCTCAGCcccatcctcctcctcacccatcctcccctctctgtctccatcacCACCATCAGCAGCGCTGGCAGGAGCACCTCCAGAGCCAGACACCCGGAATCAGccCTCCAAGGCCCTTTCGATTCCCCAAAAGCTATGCTGAGCTGATAGCCGATTGGCCAGTGGTGGTGCTGGGTGTGTGCACAGTGCTCATCGTGGTGTGTGCCCTGGTGGGCATCCTGGTGCCTGACCTGCCGGATTTCTCAGACCCACTGCTGGGGTTTGAGCCACGGGGGACAGCCATTGGGCAGCGACTGGTCACATGGAACAACATGGTGAAGAACACCGGCTACAAAGCCACACTGGCCAACTACCCCTTCAAATACGCTGATGAGCAGGCCAAAAATCACCAAGAGCCCAGGTGGCCCGAGGACCACTTTGATCGAGACAAACGGCAAGCAGAGTGGGACTTCAGTAAAGAGTTCTTCTGTGATGTGCCAGGTGACAGTTATTCTAGACTGGTGTTCACATCAGCTGATGGGAAGAACCTGTGGAGTATTCAGGCCATCAAATCCATGTGCAATCTGGACAACACAAAGGTACGTTCCCATCGGGACTACTGGAGCCTCTGCCAGCGCACCAACGACGCCTCCTGTTGCCCCAGCTGGACTCTCGGGAACTACATCGCCGTCCTCACCAATCGCTCGTCCTGCCAGAAGATCACGGAGCGCGACGTGTCGCACACGCTCAAGATCCTGCGCTCGTGCGCCAAGTACTACCACAACGGCACGCTGGCGCACGACTGCTGGGACATGACGCTGCGGCGGAAAGACCAGCTCAAGTGCGCCGGCGTGCCGCGGAAGTGCACCAAGTACAATGCCGTCTACCAAATCCTTCACTTCCTGGTGGACAAAGACTTCCTGAGTCCCAAGAGCCTGGAGCTTCCTCCGCCCGTGCTCCGATCCAGCATGCTCTTCTCGCCCACGGAGAAAGGCGAGTCCATGATGAACATCTACATCGACAACTTTGAGAACTGGAACTCGTCGGACGGTATCACCACGGTGTCGGGGATCGAGTTTGGCATCAAACACGACCTCTTTCAGGACTACCTCCTCACGGACACGGTCTATCCCGCCATCGCCATAGTGATCGTCCTGCTGGTCATGTGCGTGTACACGCGCTCCGTTTTCATCACCCTCATGACCATCATCGCCATCATCAGCTCCCTGATCGTGTCCTACTTCCTGTACCGGATGGTCTTCAACTTTGAGTTCTTCCCCTTCATGAACCTCACGGCACTCATCATCCTGGTGGGCATCGGCGCCGACGACGCCTTCGTGCTCTGCGACGTGTGGAACTACACCAAGTTCGACAAGCCGCACGCCGAGCTGTCGGAGACGGTGGGTGTGACGCTGCAGCACGCCGCCCTGTCCATGTTCGTCACCAGCTTCACCACGGCCGCCGCGTTTTACGCCAACTACGTCAGCAACATCACCGCCATCCGCTGCTTCGGCGTCTACGCCGGCACCGCCATACTGGTGAACTACATTCTCATGGTGACGTGGCTCccagctgtggtggtgctgcaCGAACGCTACCTGCCGAACTTGTTCCCCTGCGCCAAGCCCGCGCACCCGCAACAAGGTTTCTGCACCCAGACGTTCTGGGCAGGACTTTGCCAGAGGGCCGACAAATGCCTGTTCGCCGTCTCCGAGGCGTCGCGCATCTTCTTCGAGAAGGTGCTGCCCTGCGTCGTCATCAAGCTGCGCTACCTCTGGCTCTTCTGGTTCCTGGCCATCACGGTGGGCGGGGCCTACGTGGTCTGCGTCAATCCCAAGATGAAGCTGCCGTCTCTGGAGCTGGCCGAGTTCCAGGTGTTCCGGTCCTCGCACCCGTTCGAGCGCTACGACGCCGAGTACAAGAAGTTGTTCATGTTCGAGCGGGTGCACCACGGCGAGGAGCTCCACATGCCCATCACCATCATCTGGGGCGTGACACCCGTGGATAACGGCGACCCCCTGAACCCCAAAAACAAGGGCAAGCTGACGCTGGATAGCAGCTTCAACATCGCCAGCCCGGCGTCCCAGCTGTGGATCCTGAGCTTCTGCCAGAAGCTGAGGAATCAGAGCTTCGTCTTTCAGTCCGAGGAGCAGGACttcaccagctgcttcatcGAGACATTCAAACAGTGGATGGAGAACCAGGACTGTGAGGAGGCGTCGGTCTACCCCTGTTGCAGTCAGTCCACCTTCCCCTACAAGCAGGAAGTCTTTGAGCTGTGCATCAAGAGAGCCATCATGGAGCTGGATCGGAGCACCAACTACCATCTGGACAGCAAGACGCCCGGCCCGCGCTTCGACATCAACGACACCATCAGAGCCATAGTGTTAGAGTTCAAGAGCACCTACCTCTTCACCCTGGCCTACGACAAGATGTTCCAGTTCTACCGCGAGGTGGACGCCTGGATCGAGGAGGAGCTGCGGTACGCGCCAGCAGGCCTCAGCCACGGCTGGTTCATCAGCAACCTGGAGTTCTACGACCTGCAGGACAGCCTGTCGGACGGCACGCTGGTCGCCATGGCGCTGTCGGTGGCCGTGGCCTTCAGCGTCATGCTGCTGACCACTTGGAACGTCATCATCAGCCTGTACGCCATCCTGTCCATCGCTGGCACCATCTTCGTGACGGTGGGCTCCCTGGTGCTGCTGGGCTGGGAGCTGAACGTCCTGGAGTCGGTCACCATCTCCGTCGCCGTGGGGCTCTCGGTGGACTTCGCCGTCCACTACGGCGTGGCCTACCGGCTCGCCCCCGAGCCCGACCGAGAGGGGAAGGTGATTTTCTCCCTCAGCCGCATGGGCTCTGCCATCGCCATGGCGGCACTGACCACCTTCGTTGCCGGGGCCATGATGATGCCCTCCACCGTGTTAGCCTACACCCAGCTGGGCACGTTCATGATGCTCATCATGTGCATCAGCTGGGCCTTCGCCACCTTCTTCTTCCAGTGCATGTGTCGCTGCCTGGGGCCGCAGGGCACCTGCGGCCAGATCCCCTTGCCCAAAAAGCTGCAGTGTCAGGTGTTCTCCGAGGTCACGTCCAAGAGCCCCCCGGCCCAGGGGAAAGGCTCCGGCCTCGGGAAGTACCAGCTGGACGGGCGTGGCGGGGAGGTGGAGCATTACGAGCTGGAGCCCTTGGCCTCCAGTCAGAAAAGTGAAGATAAAGCCGGAGAGGAGCTTTACAACGGAATCCCTCCCCAGCAGCGCGGCGGCCCGTACTCACACATCCATTACCAGAGCAAAGCTGACGCTGGCCCAGCCGGCCCCGAGAACGGCCCCGGAGCCACGCTGAGCTCAGCAGCCCGGTGCCAGTACTCTCAGAACACTAACTGCACATGCGgggaccctcctcctcctcctcctcctcctcctcctcagcagtATGCCCCCCACCCCTGTGCTCAGCCTGCCCAGGACTCCCCGTCCTGCCCTCCCACCCCACAGCTCTTCCCACTCTCAGGAAACTCCCAGAGTaaacaaagcgcagccctgttACCTACGAACCTGGACCCAGTCTACACACACATGGAGTGCCGAATGCACTACGTCCACTGTCCCCCCGCACATTTCCACCCCTGCTCCCAGGGGAGAGGAGCGGCGCCCAGGCAAGGCCTCGTCCACAGCTGCCATCTCAGGAAGTACTGTGTCCACACAGGTTCAGCCAGAGAGCAGAGAGCCACAGCTCCCGGCTCGGAGCCCGCAGGACACGAGGAGGACCACAGACACGAAACGAGGCCCTCAGGCCCCGACGGTAGCCAGAATATCAGCCCCCCAGCCCCGACACAAGCTCAGACtcaatgcccccccccccctccccccccctccctgggCTCACCACACACAACCAGTTCTGAAAGACAGCAGAGAAGGGACAGTGGCCATTGTAGCGGCGAGAACCACGTATCCACCACAGCCACAGGTACAGCAACACACACGGACTCTTGTTGTAAAATCCCCGGCAACCAGGAGCAGCTCCGAAGCCTTTCCGTCACACGGGAGGAAAGCGCCAAAAAGTGCAAGCGCAACTCCAAAAGACAGCGGGCGTCCTCCGCCTCCCCAAAGAAACTCTACTGTTTTAACAGGGCGCTGAAAGTGAAGTGCAATTCGGCTTCAGAGTTTAACGTGCCAAAAACTGAAACCAGCGTGCCTCCTATTGCAATACACACCAATCCCTCTTCTGAAAGCTTATGCTGATAACagattgatatttttaaatgaaaactcaATCCAGAACAAATAgcaaatgtcccaaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008158 hedgehog receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248122 lncRNA downstream 6924 9147089 ~ 9148100 (-) True G183180
TU248120 lncRNA downstream 20216 9134545 ~ 9134808 (-) True G183178
TU248119 lncRNA downstream 20488 9133536 ~ 9134536 (-) True G183177
TU248114 lncRNA downstream 25794 9126721 ~ 9129230 (-) True G183175
XR_005636853.1 lncRNA downstream 55698 9098371 ~ 9099326 (-) True LOC120546288
TU248156 lncRNA upstream 37044 9325247 ~ 9327288 (-) True G183214
TU248155 lncRNA upstream 39197 9327400 ~ 9328523 (-) True G183213
TU248217 lncRNA upstream 204976 9493179 ~ 9493404 (-) True G183256
TU248219 lncRNA upstream 213709 9501912 ~ 9505372 (-) True G183258
TU248225 lncRNA upstream 244343 9532546 ~ 9543226 (-) False G183263
XM_039781668.1 mRNA downstream 130908 9020960 ~ 9024116 (-) True LOC120546609
XM_039781669.1 mRNA downstream 134596 9003269 ~ 9020428 (-) True brox
XM_039781670.1 mRNA downstream 134605 9003269 ~ 9020419 (-) False brox
XM_039780981.1 mRNA downstream 154704 8998892 ~ 9000320 (-) True LOC120546203
XM_039781021.1 mRNA downstream 163656 8961680 ~ 8991368 (-) True LOC120546235
XM_039782695.1 mRNA upstream 42281 9330484 ~ 9402765 (-) True LOC120547212
XM_039781893.1 mRNA upstream 172575 9460778 ~ 9470515 (-) True si:ch211-63o20.7
XM_039781894.1 mRNA upstream 172575 9460778 ~ 9470210 (-) False si:ch211-63o20.7
XM_039781895.1 mRNA upstream 178151 9466354 ~ 9470517 (-) False si:ch211-63o20.7
XM_039781901.1 mRNA upstream 217229 9505432 ~ 9527428 (-) False znf395b
TU248116 other downstream 21552 9129573 ~ 9133472 (-) True G183176
TU247995 other downstream 367807 8783788 ~ 8787217 (-) False LOC120546397
TU247804 other downstream 1129980 8024715 ~ 8025044 (-) True G182977
TU247776 other downstream 1388638 7761565 ~ 7766386 (-) True G182952
unassigned_transcript_1032 other downstream 2121622 7033330 ~ 7033402 (-) True trnak-uuu_21
TU248390 other upstream 811400 10099603 ~ 10101061 (-) False LOC120546281
XR_005636937.1 other upstream 1213717 10501920 ~ 10610625 (-) False LOC120546776
TU248535 other upstream 1232514 10520717 ~ 10521410 (-) True G183528
TU248695 other upstream 2085905 11374108 ~ 11374615 (-) True G183650
unassigned_transcript_1080 other upstream 3294966 12583169 ~ 12583241 (-) True trnat-ugu_2

Expression Profile