RNA id: XM_039781937.1


Basic Information

Item Value
RNA id XM_039781937.1
length 2233
RNA type mRNA
GC content 0.48
exon number 4
gene id opn8c
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 23144908 ~ 23151382 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

caaatatctgtacttctacttgaatacgggaagtgagtacttttgccatctttGGCGGTAGGTGGTGGTTGGGAGTATTTAGGCCTTTTACCATTCTTGTACagcaaacagaaaatatttttttctattatgATACTCATTTTGCGCGCACACACAGCGCatacatggaaaaatatatataatttacagGATCTAATCCAAATAATTGGAGGTTAAACTCGCTATTTTTGGCCTATTCAAGCATTCAGTGTTACTTCCTCACCCATCAGACCGGTATCCTGTCCGTTTGTCGCCTCTGGGACTCCGTACCTCCTGAAGGAGCAACACCTTTTCCTCCAGAGAGTTCAAAAGCACGCGCGCGGCGCCTCCATGCGTTTCACGGTTAGCTCGCGCTGTGAATTGCCATGGTGACACACCCGCCTGCATAAAAGCCTCCGTGCACACATCTCACTTTGTGAGTCCGGATTTTAGCCGTGACAACATCGTCACAAACGGCTCAATGGCTCTGAACTCCTCTGGAGACAACCGGACCGTCTCTGCCTTCACCTCCAAACTGACCCCAGCGGCTGACATATGTGTGGGACTGGTCATCCTCTTCGTCGGCAATGGACTGGTTCTGGTGATTTGTTACCGCAGGAGGAAGAAGATGGTGGGCTCAGAGCTGCTGTGCGTCAACCTGGCCGTGGTCGACTTCCTCTGCTGCATCTGCTTCTACCCGCTCTCCATCCTGTCCTCTTTCCACCATGGCTGGCTGGGAGAAAACATCACATGTGTTTACTACGGCCTCGGCTGCTACATCTTTGGCCTGTGTGGCATGTTCACCATCGCCGCCATCAGCATAATCCGCTACCTGAAGACCTGCCACAGATCGGTTTACgCTGTGTGGCTGAAAGGACCTAACATCAAGATAGCGTGCTGTTCCACCTGGCTCATCGCTGCTGTGTGGTCCAGCTTCCCTCTGTTTGGCTGGGGCGAGTACGTCCCTGAGCCGTACGGACTGTCGTGCACCGTCGCCTGGAGGGGTTATCATACCTCAGCCAAAGATGCTTTCTATGTCATCTGCTCCTTCGCCTGCTTCACAATGGTTCCTATCCTCCTCATCGTGGTGTCCCAGTGTCAGATCCTCTACGAGGTGTCTCGCTTCTCCCACTTGCTGTCTGCGAGACACATCCGCAACAACTTGCGATATGCTGAAAAACAACTGTCCGTGATGTTTTTCTGCATCAGCCTGGGTTTTATAATTGCCTGGGCGCCGTACACTATTGTGTCCTTCCTCTTCATTTTCCACAAGGGGAGCCAGTACATGGCTCCTGAGAGCTTTGTGTTCCCCGCCCTCTTCGCCAAAAGCTCCCACATCTACAACCCGTTCAtctacttttactttaacaaGCTTTTCCAAAAGGAGCTTCGCTGCCTGCTCCTCTCTTTCTGGCCCAGGTCGGGAGGAAACCAAGTGGGCGTCGACATTGCCGAAGTCCACCAATATCCCATCCACATTCAGCTCCAGGAAAGAGGCTGCGTCCAAAAGAAGAATGTTGATTTATCTCGGGTCATAACTCACAGCAAGAGCAagagcaaagaaaaagaaaaagaaaaagacaaagaatcGCACGCCAACAGCAATCATGTCCTGAGCAGGCCGGTGTATGCCTGCTGGGGGACCACAGCGAAGAATGCCCCCACCATCTAGGACAATAAACCTGCCAAAGgcaccctgtctgtctctctatgaACTCTGACTGTCACTGTCAGTGTCGATACAGAGACaggtacggtggccctgaaggtcaaaacacaaaagcatttCACAAAACACTCtgaaatttcacaaaactgaACAACATTTCAccaaacacaacagcaaagCAAATAACAAAACGGCATTTGGTGAGACCCAAACCAGAAAAGGTAGGTACGTGTTGGACAATGATTCCTTGTTGCTGATTGGATGCACTGGCTGTCAGTCTGTGACAAACTGaaattcttctttttcttttggatttaaatgtacattgtgtaattttttgagttgattcttagcaaaaacccctttgttctttcacaaatatgtactcattcatgtgtaattacttccaccaactaatcaaagtattctcgtaagcgtggaatctgacattcagaatacatacgggCGAGTTGCTCGAATGACGGCCcgcatgttgcgcctccatctttaaaatacattagccaaagagggccatacctccgcatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252963 lncRNA upstream 618 23143959 ~ 23144290 (+) True G186726
TU252962 lncRNA upstream 1260 23143430 ~ 23143648 (+) True G186725
TU252958 lncRNA upstream 2268 23140507 ~ 23142640 (+) False ppp2r5a
TU252957 lncRNA upstream 49403 23092648 ~ 23095505 (+) False dtl
TU252933 lncRNA upstream 126108 23016957 ~ 23018800 (+) True G186697
TU252966 lncRNA downstream 45334 23196716 ~ 23196995 (+) False rsph3
TU252986 lncRNA downstream 117416 23268798 ~ 23275460 (+) True G186747
TU253108 lncRNA downstream 269517 23420899 ~ 23432383 (+) True G186842
TU253109 lncRNA downstream 283754 23435136 ~ 23435351 (+) True G186843
TU253107 lncRNA downstream 286858 23438240 ~ 23439520 (+) True G186841
XM_039781867.1 mRNA upstream 4122 23095912 ~ 23140786 (+) True ppp2r5a
XM_039781868.1 mRNA upstream 4122 23095912 ~ 23140786 (+) False ppp2r5a
XM_039780975.1 mRNA upstream 49687 23087820 ~ 23095221 (+) True dtl
XM_039781445.1 mRNA upstream 178912 22962033 ~ 22965996 (+) False si:ch211-22i13.2
XM_039781441.1 mRNA upstream 185649 22945509 ~ 22959259 (+) True rhag
XM_039781933.1 mRNA downstream 8645 23160027 ~ 23186726 (+) True tagapb
XM_039781934.1 mRNA downstream 8647 23160029 ~ 23186726 (+) False tagapb
XM_039781935.1 mRNA downstream 8649 23160031 ~ 23186726 (+) False tagapb
XM_039780917.1 mRNA downstream 41256 23192638 ~ 23196996 (+) True rsph3
XM_039782344.1 mRNA downstream 47452 23198834 ~ 23237172 (+) True ezrb
TU252499 other upstream 1079319 21985779 ~ 22065589 (+) True G186394
TU252459 other upstream 1197908 21944743 ~ 21947000 (+) True erh
TU251678 other upstream 3284703 19856735 ~ 19860205 (+) False kif25
TU251521 other upstream 3496752 19634283 ~ 19648156 (+) False acp1
XR_005636890.1 other upstream 3605700 19429596 ~ 19539208 (+) False nhsl1b
XR_005636956.1 other downstream 426996 23578378 ~ 23589689 (+) True nfkbie
XR_005636955.1 other downstream 426996 23578378 ~ 23588514 (+) False nfkbie
TU253325 other downstream 928221 24079603 ~ 24083104 (+) True G186975
TU253479 other downstream 1355531 24506913 ~ 24507813 (+) True G187094
TU253601 other downstream 1852637 25004019 ~ 25009407 (+) False lama2

Expression Profile