RNA id: XM_039781938.1



Basic Information


Item Value
RNA id XM_039781938.1
length 976
RNA type mRNA
GC content 0.47
exon number 9
gene id LOC120546757
representative True

Chromosome Information


Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 21723642 ~ 21727342 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


taatcatgggggcggtccctgttattcccaggtggcacCGATGACATCACATCCAGTATAAATAGATGAAGTGAATCAGcatttcctcctttccttttgTCTGGAGCACATGGTGTGGTCATTATCTTCAAGAACTGTATTTAGAGGGACAGGAGACGGGCTCAATCCGCCACACAGAAGTTCACACAACCATTCAACTGAGAAGTCCCGTGGGTGTCTCTCTATTTTTGCAGAGGTTTAAAGATCCCTCTTTATCTGCAATCATGATCCAATTGCTGAGCGTAGCCATTGTTGCAGGATTGTTCTTTGAAAGCAACCAGCAGACAGCCAGAGTGTCTGACTTAGTTTTACTCCCTAAACCAGGATGCTGGACAGGCTGGTTTGACAGAGATGACCCCTCTGGAACTGGAGACTGGGAAACCCTCTCTGATCTTCGCAATGAGTACCCAGGAAAGATCTGCTCTAAACCATTAGCTATTGAGGCGAGAACTCTATCTGGACTCACTGTGGCTGCAGCAGGTGATGTGATTTATCTAATGGACACCACTAAAGGATTTGTCTGCAGGAACCAGGACCAACGCAGGCGTAAGATGTGTAAGGATTATCGTGTTCGTTTCAGCTGCCCTCGCTCTTTCTGTAAAGTGTGCTGGACCCAGTGGTATAACCGGGACGCTCCCAGTGGAACAGGGGACTGGGAGAGTTTGACTAACCTGAGGACAGAAAACCCGGGACAAATCTGTGACAGCCCAATGTCCATTGAGGCTGTTACCTCTGACACATTGACCCCAGCCCTCTCCACAGGGCAGACCTTTATTTACAATCAAAATGAGGGATTGGTTTGCCACAATACGGACCAGGAATCTGGCTTGTGCCTTGACTACAAAGTTCGGTTTGGGTGCCCATGCTAAGTCCTGACTCCACAGCAAACACTGCGAAGGATAAGACTCATTTAATAAAATTTCTCAATTTTCTCAGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU252261 lncRNA upstream 180861 21540588 ~ 21542781 (+) True G186297
TU252179 lncRNA upstream 248338 21474552 ~ 21475304 (+) True G186220
TU252169 lncRNA upstream 375061 21347944 ~ 21348581 (+) True G186210
TU252056 lncRNA upstream 551003 21170982 ~ 21172639 (+) False gtf2h5
XR_005636932.1 lncRNA downstream 18239 21745581 ~ 21746554 (+) True LOC120546760
XR_005637027.1 lncRNA downstream 105606 21832948 ~ 21833782 (+) True LOC120547080
TU252574 lncRNA downstream 567100 22294442 ~ 22294697 (+) True G186452
TU252572 lncRNA downstream 573442 22300784 ~ 22301483 (+) False lin28b
TU252644 lncRNA downstream 808317 22535659 ~ 22537716 (+) True G186506
XM_039782270.1 mRNA upstream 30516 21687280 ~ 21693126 (+) True acat2
XM_039781903.1 mRNA upstream 36725 21680522 ~ 21686917 (+) True LOC120546740
XM_039782414.1 mRNA upstream 70074 21617339 ~ 21653568 (+) False fndc1
XM_039781940.1 mRNA downstream 23950 21751292 ~ 21754890 (+) True LOC120546759
XM_039781941.1 mRNA downstream 24242 21751584 ~ 21754890 (+) False LOC120546759
XM_039782484.1 mRNA downstream 78673 21806015 ~ 21809674 (+) True LOC120547079
XM_039782481.1 mRNA downstream 107136 21834478 ~ 21843556 (+) False LOC120547078
XM_039782480.1 mRNA downstream 112601 21839943 ~ 21843556 (+) True LOC120547078
TU251678 other upstream 1863437 19856735 ~ 19860205 (+) False kif25
TU251521 other upstream 2075486 19634283 ~ 19648156 (+) False acp1
XR_005636888.1 other upstream 2184334 19429595 ~ 19539308 (+) False nhsl1b
TU252459 other downstream 217401 21944743 ~ 21947000 (+) True erh
TU252499 other downstream 258437 21985779 ~ 22065589 (+) True G186394
XR_005636956.1 other downstream 1851036 23578378 ~ 23589689 (+) True nfkbie
XR_005636955.1 other downstream 1851036 23578378 ~ 23588514 (+) False nfkbie
TU253325 other downstream 2352261 24079603 ~ 24083104 (+) True G186975

Expression Profile