RNA id: XM_039781946.1


Basic Information

Item Value
RNA id XM_039781946.1
length 1800
RNA type mRNA
GC content 0.55
exon number 2
gene id LOC120546767
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 34008396 ~ 34013448 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTATCAGTGTGTTGCAGTGGGCCATTCTTCACACAGCTTACGTGACGGGCGACACCTTGACTCACACTGCAGCTGGACAAAGAACACCTCAGCGGGTTTTATCTCCAAACCAGGATGAAAAATAAAGCCGACCCAATGGTGCATGGTTTATGTTTTAAAAGCACAAACGACTGACTGTCAGTCGTCTGAAATGTGGCCATTTTTCCAGAGCGAGAGGGGCTCAGATATTATCAGAAAATAATCAGTAATGAGCTTCTACCTTCACGCTCAGCGTCATCTTTAAGAGGTTGTACCGCAACGCTCGTAAAACTCTTCCCCGTGTTATCTCTTCCAAGCAAAAGGACGAAAACCAAATCTGACCGGCGCCACCCATAGACAACAATCAAAGGCAATCATTTTCAGGTGAACGGATTTGCTTTGTTTGGTGGAAATGCGACAAAGAGAGCCATTTCTGCGGCGTTTTGTACCCTGCCATCAACTCATCAGATAAGAACGCTGCTTTGCGGCTCCTTCGGCAGCGCCGGTGACCTTCACGTTGCTGAAACCAAACCTGAAAAGCAGACTTGGGTCAGTTTTTTGTTCGTATGAATGTTTTCTGCCATTCAGACGCTTGGTGCATCTTTTCCAGGATGCAGAATGGGATGAAACTGTATGTAACAGTTGCCAAGGAtacagcagcaggcagaggGGTAGTTCGAGACGGTTTAACCCACACGCCCGCcctgtgttttcatttcattcccACTGGCTTCTCTTTGCTTCGTCCTCAGGAATCACTTCAGGAGACGCTGCCGAGGACGCAACACAGCCCGCTGGAGCCTGCGCTGAGGAATTATCTGCTGTCAGGAACCTGCCGGGGGTGACGCCAACGCCAACCTGGGACCTGGAGGGTGCTGAGCCATGCTGTCCGCAGCCGTTCAGATCCTGGCGTTCGCCCTGGCGCTGCTGGGCGTCCTCGGCGCGACCGTGGCCACTCTGCTTCCCAACTGGAAGGTGAGCGTGGACGCGTGGTCCCACTTCATGACTCCTATCTCCCAGATGCAGGGGCTGTGGATGGACTGCGTGTGGTACAGCTCCGGCGTCTTCAGCTGCACCATGAAGAACTCGGTGCTGTCGTTGCCGGCGCATCTGCAGACCATGCGGGCCGCCATGGTTCTGTCCTGCATGGTGGCGTCGTTTGGGCTCTGCCTGGCCTCGCTGGGGCTTAAATGCACGCGCTGGGGGGGCAGCCACCGAGCCAAGGGACACACGGCCATCGCCGCCGGAGGTTGCTTTGTCCTCGCCAGCTTCTTGTGCCTGGTTCCGGCGTCGTGGTTCACCAACGAAGTCATCACGGTGTTTCTGACGACAGACCTGCCGGAGAGCAGCAAATATCAACCGGGGGGAGCTCTGTGCGTGACGTTTATCTCGGCCGGCTTCCTCCTGGCTGGAGGGGTGATTTTTTGCTTGTCGTGTCCGGGGAAAAGATCCGGGCGCCCGGACTACGCTCCCTCCTACGACCACCCCGACAGGTTCATCGTGCTGCGAGACGATCAGCGGAGGCGAGAGCCGGAGCAGACGGACAACGTGCAGCCGAAAAACCGGCACAACAAGACGGTTCAGCTGCAGATGGACAACGTGAAGACGCAGAAACCTCCTCAGGAGAAAGCTGAGCACAAGGCTCACTCGTCTCCCTCCAAACTCCCTCCGAAAGACATCAAGGACAGCTACAGCCTCCAGGAGTATGTCTAATCCTCGCAGCGGAGCAGGGGAAGTGTGGAGTTTTCAGCTGAGGAGCTGTGGCTTTCTGGCTCATAGTC

Function

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256504 lncRNA upstream 66356 33886415 ~ 33944584 (+) True G189294
TU256503 lncRNA upstream 67378 33886415 ~ 33943562 (+) False G189294
TU256499 lncRNA upstream 67378 33910022 ~ 33943562 (+) False G189294
TU256580 lncRNA upstream 72591 33938055 ~ 33938349 (+) True G189352
TU256517 lncRNA upstream 113367 33887512 ~ 33897573 (+) True G189302
TU256710 lncRNA downstream 33163 34046611 ~ 34047007 (+) True G189439
XR_005636834.1 lncRNA downstream 56153 34069601 ~ 34071742 (+) True LOC120546208
XR_005637028.1 lncRNA downstream 66811 34080259 ~ 34096714 (+) True LOC120547081
TU256727 lncRNA downstream 88063 34101511 ~ 34102289 (+) True G189450
XR_005636863.1 lncRNA downstream 89295 34102743 ~ 34104308 (+) True LOC120546319
XM_039781945.1 mRNA upstream 10404 33859152 ~ 34000536 (+) True LOC120546766
XM_039781373.1 mRNA upstream 154528 33846444 ~ 33856412 (+) True LOC120546446
XM_039781371.1 mRNA upstream 239538 33765353 ~ 33771402 (+) True LOC120546444
XM_039780949.1 mRNA upstream 344687 33629800 ~ 33666253 (+) True LOC120546181
XM_039780971.1 mRNA upstream 594854 33399801 ~ 33416086 (+) True LOC120546192
XM_039781374.1 mRNA downstream 5183 34018631 ~ 34035953 (+) True LOC120546447
XM_039782426.1 mRNA downstream 23608 34037056 ~ 34052641 (+) True LOC120547053
XM_039782425.1 mRNA downstream 25114 34038562 ~ 34052641 (+) False LOC120547053
XM_039782427.1 mRNA downstream 42532 34055980 ~ 34065783 (+) True LOC120547054
XM_039782429.1 mRNA downstream 42532 34055980 ~ 34065783 (+) False LOC120547054
TU256520 other upstream 24464 33965583 ~ 33986476 (+) True G189305
TU256522 other upstream 71553 33932064 ~ 33939387 (+) True G189307
TU256516 other upstream 150537 33859146 ~ 33860403 (+) False LOC120546766
TU256542 other upstream 239567 33765501 ~ 33771373 (+) False LOC120546444
XR_005637066.1 other upstream 247314 33763465 ~ 33763626 (+) True LOC120547364
TU256875 other downstream 449460 34462908 ~ 34464897 (+) True G189544
TU256872 other downstream 469416 34482864 ~ 34503755 (+) True G189541
TU256921 other downstream 472976 34486424 ~ 34487177 (+) True G189570
XR_005637062.1 other downstream 505840 34519288 ~ 34519426 (+) True LOC120547360
XR_005637063.1 other downstream 511440 34524888 ~ 34525026 (+) True LOC120547361

Expression Profile