RNA id: XM_039781966.1


Basic Information

Item Value
RNA id XM_039781966.1
length 3833
RNA type mRNA
GC content 0.47
exon number 6
gene id LOC120546776
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 10455244 ~ 10610625 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGCACTAGAAAGTAGAAACACGACAAATTAGGTTTTTCTCTAATGTGTTAAAGCTGAGACGCAAATCcacactagctagctacattttaGCTAGCGCCATAGGCTAGCGTGAGAGAGCTTCGttcagcagcagagcagcagtaACGTTAGTTTGGCGCCACATAGAGGATAACAGGAACACGACATAGCTAGTAAAGTACCATTAGCTAGCCAACAAACCCAAATTACTTGGGCTTAACGCTTAACAAATTTTCGAAGGTTTagcagacagaagaaaatggatgaaatcacaCGAGAAGATGTCAGTCCACAAACTGAGGGAGAGCTTACTTCACCATCCCCCCCCAAACGACCAAAGACAGATTGCACAATGACAAACAACCCCAGTGGCAAAATATGGTTTGACTTCCCAGAGCTTTTCACATTTCGTAAAACCACTGGCTCCCCATCATCAACAAGTACCTTGCAGAAAAGTGCGGGCCAGGTATGCATAGCAGATTGTGGGGATATTGAAGATGAGAAACGTCATGAGCAACCAGAAGATCCCCGATTACTTGTCACTGCTATTACTAGGTTGACAacgtcacacactgaggacgcTCACACAGGATCATCTAAAGTCTGTATGATCGCTGCTGAAAGATGCTTCAACCCTCCGGTGAGAGATGAGCAGCCTCCAGTTACGGAAACTGACAAACTCAGCCCATACCCAGCAGGTGATGCAGGTGGGGCATTAGCAGAGTCTGACAATCCAAACGACCCGTCCAGTCATCCTGATTGCAAACGGCTGGGGAAATCACTTGAAGACGAGGCCCCTGGTGGTTGCAGTCATCATGCTGGAAATGACGAAGATTGGAGACAGGTGCAATATAGAGTCAGTCCAATCCAAAAATTCACCCTCAGTTCAAGTGATGAGGGCGTCAGATGTCAGTCTGATTGCTCTTATGAAGATGCTTTACGTGACACAGGTTTCTGTAATACACTGAGCCAATCTGCAGAAGTTGAAGAGAGCAATCAGAAGAGGGACGAGCATGGATTTAGTGAGAATATCCTTTTCAGCAAGGAAGGGGAAGAGGGTAACAGACTTATATCTTtcaataaatatgcagactgtGAATCATTATACTCAACCCCTGAGGAGCAACCCTCCGAAATCTTGGCAGAAGGggtaaaaaatgaggaaaaaatatTAGAATTGCAGATTTGTGGAAATGGAAATGTTGCCGTCAGTGATGGGGAAACAAAGGGCCAAGTTAACGAGAATGGCACGAGCGAAAACTCCATCCCTTCTGCTGCTGAATGTGCTGAGGGATCAATTGTTTCTTATGATGTGGTATTAGCCAGAAATATCGCAACTGAGAGTGTGAGTATTGAAGCTGACAACTTCTGTGGGGAGAGAGAGCATGCTGGCAAGATGATAGCCAAAGCTCGGAGTGAAACGGCGGATCACACAACAGAGACTCCAATGCCCCCAAGAATCAGTCAAGAGCCTGCTGAAGGAGATAATGATGCATGCCATTTCAGTGTATTTGACCCTGCAATCTGGAGTGAAACTGACAAGAAGGCTGAGGAGAAACCCTGTAACTCAGAGAGTGTTGCAGGTGTAAAATTATTCCCATCAGTAAAAGTCTGCGAGATGGAAGCccctctttcactctgttttgACGCCCAGCTATCACAGGAATTTTCAGCCCCCAAACACACCGGACAGCTTAATTACCATAGCAGAAGATGCGAAGATGAAAAAGATTTATGGCAGTCATACACAGAACCAAAGGCTTGTACAATCACTACCAACGAAACACACAAGACTGGCAACGAAGGCAGCTGTCTTTGGAAATCCAGTCCCAGCAGCAGTCCATGCCTGCCGGCAAAGCCTCCTGCAGGGGATGAAAAACAAGAAAGCCATGATACTTTGAGACATCAGTTGAAAGCGCAGGATCATTCCGGCTCTCCTCCTGTCAGTCCTGGCCACCTGAAGACACAGGAGGTTGAATATGTACAAACTGAAAAGCCAGAAAGAGAAGGAATGACGAGTTTTGAAGAACAATTAAGAACCGGTGTACATGTGAAGTCAGAAAACTCATCAGGCTTAGAGGGAAAACTGCTGCAACAACATGAAAAATACATAGAAGAGCTAAGTGAAATGATAACCGATGATTGCTTCGGTGACTGGACAGAGGAAATAATAAGTACATATGACAAtacattaacacacattaaTGAGGAATCGGGAAATTGGAAAAACATTGAATGCGTGTCTGATCACCCATACAGTGTCGCTTCAACAATGGAAGGGACAACAGAAGAGAAGGACAGAAAAGAAGAGGCAAGTGTTGAAGAAACTGATGGTGATGTGCATGGTAATTCAGAGATACTAGTGAAATCAGAGGATGATCATCAGCAACAAAGTCAACAGAACGGAGACATGACTGAGGAATGTATCGGTGAATGTGCAGAGGGCAAAATGAGCGAAAGCAGCCACAAGTTAACCCTAGTCAGTCAACGTGGACACGAAAACAAGCTCAGATGTTTCGCCGATGCCCAGCACAGGGCTGAGACATTCATGGGTGAACAGAAAGAAGACCTTTCGGCTTTCACGTCTCCCCCAACAAGCGATGCAGTTGTGCCAGGTCCGCATGAATTACCCCGTACACCAAACGCTGACAACAACCCCACAGCCCCACACTGTAACGACccattttcaccagtgccatcTGGCTACGCTTTCAGCGACCGTGCGCCAGGGGGTTTTGACACTTTCGAAAAGATCCAGCTCTCgctagatgatgatgatgacgatgatgatgatgatgatgctagCCTGAGCAACAGCCCTCTCCTCACCAGCCTACCTGGGCAACTTTACTACTTTATGCCAGAGAGCAATGAGCATGATGAGGTaacagaagaggaggaggaggagatggaaagATTTGAGTGTCAAACTGAGAACATGGCAAAGGGATTGACACGCAGTGCTACCAGTTGTAATGACCTCCCAACCTTTACCTCAGCAGCAGATGTCATTGCTCTAGGGTCGCCAGAGCAACAGCCTAACTGTGAATCATCTTATAATTCCTCCGAGTGCTTCCAGGATGATTTTAACCCACAGTCAATGTCCTCCCCTATTCCCCCGAGGAGCGACAGTCCAGCCTCTGACGTGAACGGCAGCCCTAAGTTTGAGATGAAAAAACAGTTCGACATGGTCTTGAAGGAGCTGCACTTGTTTTTTGATATCAGTATAAGCGGTTTAGCAAGTGACGGTAAAGCATCGTCACCTGAGCAGAGTAGTGATGTCACTGCAGCCTTGGAGGGTGACACTTCAAACGGCAAAGAACATCTCAGCAGCCCCGAACTAGGACCACATAGAGACACATCATCAGATGATGCTGATGAAGACTGCAGCCTGGAAATGTGTGGAGGGGATCCAGTGGTTTCCTGTTCCTCTGGCAGCGGTGACGGCGAGCAGGAGGTGCCCCTTGGCAGCCACCTGTGCCAGGAAACATCCATGTACACTCCAGAGAAACGGATAGAGCCCCAGGAGATGGAGCAGAAAAGGAAAATGTGGTCTCCGTCCTTCGCGTGTCAACCATTCTTGGAACTACTGAGCCACAgACAGCCGGAGCCACCCAGGAGACTGGAGCCTCTGAAAACATGCTCACGGCCGATCCGGGTTGGACTTTCAAAGAGAGCCAAGACCAAACACCTCCACCATCTCCACTCCTACAAATGAACGTTGGAAATGCAATCAAGGTGAGATTCCTTCGGTAAGCCCCCCTAGGGGTTTTCTTAATCTCGCCTGCACAATCTTCCTTTTATTTAAATTCac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248503 lncRNA downstream 221676 10220918 ~ 10233568 (-) True G183497
TU248497 lncRNA downstream 238118 10216351 ~ 10217126 (-) True G183492
TU248447 lncRNA downstream 277675 10176900 ~ 10177569 (-) True G183457
TU248448 lncRNA downstream 279889 10174736 ~ 10175355 (-) True G183458
XR_005637025.1 lncRNA downstream 388958 10064593 ~ 10066286 (-) True LOC120547073
TU248626 lncRNA upstream 144371 10754996 ~ 10780282 (-) True G183594
TU248658 lncRNA upstream 337191 10947816 ~ 10948114 (-) True G183616
TU248663 lncRNA upstream 353207 10963832 ~ 10964049 (-) True G183621
TU248683 lncRNA upstream 579029 11189654 ~ 11210793 (-) True G183639
TU248701 lncRNA upstream 836350 11446975 ~ 11447319 (-) True G183656
XM_039782068.1 mRNA downstream 5834 10398802 ~ 10449410 (-) False fam49a
XM_039782069.1 mRNA downstream 5834 10398802 ~ 10449410 (-) False fam49a
XM_039782067.1 mRNA downstream 5834 10398802 ~ 10449410 (-) True fam49a
XM_039782062.1 mRNA downstream 76117 10347000 ~ 10379127 (-) True fzd3a
XM_039782064.1 mRNA downstream 76117 10348141 ~ 10379127 (-) False fzd3a
XM_039782864.1 mRNA upstream 51492 10662117 ~ 10666300 (-) True sf3b6
XM_039780998.1 mRNA upstream 83214 10693839 ~ 10708837 (-) True pla2g7
XM_039780999.1 mRNA upstream 83214 10693839 ~ 10708835 (-) False pla2g7
XM_039781001.1 mRNA upstream 113845 10724470 ~ 10728525 (-) True glrx5
XM_039782719.1 mRNA upstream 935561 11546186 ~ 11548350 (-) True LOC120547228
TU248390 other downstream 354183 10099603 ~ 10101061 (-) False LOC120546281
TU248116 other downstream 1321772 9129573 ~ 9133472 (-) True G183176
TU247995 other downstream 1668027 8783788 ~ 8787217 (-) False LOC120546397
TU247804 other downstream 2430200 8024715 ~ 8025044 (-) True G182977
TU247776 other downstream 2688858 7761565 ~ 7766386 (-) True G182952
TU248695 other upstream 763483 11374108 ~ 11374615 (-) True G183650
unassigned_transcript_1080 other upstream 1972544 12583169 ~ 12583241 (-) True trnat-ugu_2
TU249125 other upstream 2349873 12960498 ~ 13007868 (-) True LOC120547209
TU249198 other upstream 2583452 13194077 ~ 13215824 (-) False hmgn3
TU249194 other upstream 2595682 13206307 ~ 13215824 (-) False hmgn3

Expression Profile