RNA id: XM_039781997.1


Basic Information

Item Value
RNA id XM_039781997.1
length 1666
RNA type mRNA
GC content 0.38
exon number 2
gene id LOC120546792
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 6070546 ~ 6073220 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAGAGAACCTCAGTCACAGGGACTGACTGAACAAGGCAGTTGTCATAACTGAGGCTATCATCATGGGGGAGTGGTCCTTCTTGTCTGATTTGTTGGACAAGGTGCAGTCACACTCCACTATAGTAGGGAAGGTCTGGATGAGTGTTCTTTTCCTCTTTAGGATCTTTATCCTAGCTGCTGGCGTAGATAAAATATGGGGAgatgaacaagcaaacatgaacTGTAACACCCACAGCCCTGGCTGCAGGAACGCCTGCTATGATCAATCCTTCCCCATGTCTCACACACGCTTCTGGGTCCTCCAGATCCTTATTGTCTCCACTCCAACAATCATTTATTTGGGCCACGTCCTGCTGGTGATTCGCAGAGAAAACAAGTTAAGGAGACGCCTGGAGCAGAAACTTGGTAAAAATGGGAAAGTTAAATCTCCAAAGTATTCAGATGAACATGGCAAGGTACAGCTCAAGGGCGTCCTGCTGGTCAGCTACCTGATGCAGCTGCTGTTCAAGATCCTGCTTGAAGTGGCATTCAGCGTAGGCCAGTACTACCTCTATGGCTTTATACTTATGCCTAGTAAGATTTCATATAAAGAATACCCCTGTCCATCACCTGTAGACTGCTTTATAAGTCGTCCCACAGAGAAAACCATCTTCATTGTCTTTATGTTGGCAATGACCGTCCTCTCTGTGATCCTCAACATCATGGAGATGTTCCACCTAATGATCTCAAAAATAAAGGAGAATAAAAGGAGAAGCAGTGGCTCAGAGATGTACTGCCTCAACAAACCAAACCACAATTCAACTGAGGGAGTTACATTTTGTTGAAGGACTGTGAACAGAGATATTTAGCTTTAAGTTGGATCCTGATCCTTGCTTCTCAAGGTTATTAGACATAAATATTGAGTTAAGTCACATCCACTTTTTAATTGTCAGACTACTACATGTATATTATGTACCAACAGTAAGACatcatatattttacttttacttgaggcTTTACATAAATCAGGTATGTGGCAAGTACCAGGATGGATTGTATTCAACCATATCTATCAAATTGTACAGAAGCAGTCGACGTGAACATGACATTATCTGATCCAAGAAtattaaatgtgtatgtgtaattAATTACCagtaaaattgtgtttttatttcatcatcTATCTGTTGAGTTTTAATTTTCTCAGTAGCTTTGGTACATTTCTCAGATCACAATTGACACTCTCAAATCTGTTTGTTCAACTTCACATGATATAGTCACTTGTGCACAATGTATCATTGTTTTGGTCAAATAGCAAGTGCTTTTGTACATGGATGCAATTGATCATGTACAATTGTCTACTGTTTTTTACATGATCAATTGATTATGATATGTTGATCAAAATATAATATACTGGATATCTGTTGAATTGTCTTTCTCCCAAAACATCTAGgcataaataataattgaatatgTCTTTAAATGCAAAATGGTTGAACTCATTGTCATAATCGGTCAAGCAAGTTTTCCATTCAGAAAAAACGCATTTCTTGTTGTAACCTTCTTCATTGTTGacatagtattttttttctttgtgctataaaatagttttgtgtttttctttctgaatCCCAATGACACTGTAATTTGTtgaaaaccaaaaataaaagaataaatgtAAATCCTG

Function

GO:

id name namespace
GO:0007154 cell communication biological_process
GO:0005922 connexin complex cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU247276 lncRNA downstream 85243 5984850 ~ 5985303 (-) True G182517
TU247278 lncRNA downstream 87792 5981404 ~ 5982754 (-) True G182518
TU247272 lncRNA downstream 94156 5976121 ~ 5976390 (-) True G182513
XR_005636948.1 lncRNA downstream 95647 5970833 ~ 5974899 (-) True LOC120546803
TU247266 lncRNA downstream 114596 5930663 ~ 5955950 (-) True G182507
TU247328 lncRNA upstream 25195 6098415 ~ 6098646 (-) True G182562
TU247334 lncRNA upstream 54385 6127605 ~ 6128535 (-) True G182566
TU247335 lncRNA upstream 55363 6128583 ~ 6128828 (-) True G182567
TU247342 lncRNA upstream 86345 6159565 ~ 6159858 (-) True G182574
TU247345 lncRNA upstream 90995 6164215 ~ 6164437 (-) True G182577
XM_039781983.1 mRNA downstream 61106 5986437 ~ 6009440 (-) False gopc
XM_039781982.1 mRNA downstream 61107 5986437 ~ 6009439 (-) False gopc
XM_039781981.1 mRNA downstream 61107 5986437 ~ 6009439 (-) True gopc
XM_039782565.1 mRNA downstream 482309 5389153 ~ 5588237 (-) False lrfn2b
XM_039782564.1 mRNA downstream 482309 5389153 ~ 5588237 (-) False lrfn2b
XM_039781989.1 mRNA upstream 159522 6232742 ~ 6268926 (-) False cgrrf1
XM_039781991.1 mRNA upstream 159522 6232742 ~ 6267473 (-) False cgrrf1
XM_039781988.1 mRNA upstream 159522 6232742 ~ 6257135 (-) False cgrrf1
XM_039781990.1 mRNA upstream 159522 6232742 ~ 6257062 (-) False cgrrf1
XM_039781992.1 mRNA upstream 159522 6232742 ~ 6247875 (-) True cgrrf1
TU247260 other downstream 158637 5911312 ~ 5911909 (-) True G182502
TU247229 other downstream 277608 5790289 ~ 5792938 (-) True G182474
TU246982 other downstream 1267076 4745773 ~ 4803470 (-) False smim8
TU247550 other upstream 627271 6700491 ~ 6701117 (-) True G182764
unassigned_transcript_1029 other upstream 953922 7027142 ~ 7027214 (-) True trnak-uuu_18
unassigned_transcript_1030 other upstream 956754 7029974 ~ 7030046 (-) True trnak-uuu_19
unassigned_transcript_1031 other upstream 958427 7031647 ~ 7031723 (-) True trnak-uuu_20
unassigned_transcript_1032 other upstream 960110 7033330 ~ 7033402 (-) True trnak-uuu_21

Expression Profile