RNA id: XM_039781999.1


Basic Information

Item Value
RNA id XM_039781999.1
length 1429
RNA type mRNA
GC content 0.48
exon number 2
gene id LOC120546794
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 6462940 ~ 6464802 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TATTCTTGGGGTGAGTGACAGAGATGCttagggattttttttaaacgcatgTGACTAGTAAAATGctttgtgattggtcaaaataaGCCTACACGTACAGTAagttttcttttactgtctatagTTTTCAGCAGACATTTTTAAACCCCGCTAGCGATCCGTCATGGCTGACTCAAGTGAAGGAAGTGATACTGATGAAGTTACGAAGGATGACACAGGACCACATTCAAACGATAACCCCGATGATTTAGATGTACCAGTCGATCACGTGAGAGCAGTGGATCTTAGCGATGTTtcgagaggaagaggaggatatGCGCGATTTTGCTGGCTTCCAAGAAGAATGGAAGACCGACAACTTTCACGCTCATGAGAAGATCCCGTATAACCGCGAACCAGGCGTCAATATAGAGCTTCCAGAGGTTGTTACACCAATACAGGTCTTCTCACATGTTTTCACGGAGGAGCTGTGGATGCGACGTGTAACAGAAACAAATCTTTATGCTGAACAATCACGGAGCGCAACTCCAAACAGCAAGTGGGTACCAGTCACAGTTATTGAAATGAAGACTGTCATTGGACTGTGTCTTGCCATGGGGATCCTTGACCTGCCATCACGTAGAGATTTTTGGCGTCAGAAAAAGTGGCTTCTTCGAACGAGCATCCCCCAAGCCATTTCAAGAGAAAGATTTGCCATCATCTGGAGGTATCTCCACTTGCAAGACAACAGCAAAGATGTGAACCACTCTGACAAGCTCTGGAAAGTCAGATGGTACCTTGACTACCTGAAAGATCGATTCCAGGAACTGTACAAAGTGGACGGCTTTGTCAGCGTGGATGAAAGTATGGTGAAATTCAAGGGGAGACTTGCTTTCCGGCAATATCTTCCTCTCAAACCCACCAAGTGGGACATCAAGGTGTGGGTCATGGCTGAAAGCTCCACCGGGTATGTATCAAACTTCCAGGTCTACACCGGACGTGAGGGGGGAGTAGCGAGAAGGGCCTTGCGCACCGCGTTGTGATGGATCTGGCTATCCCATCTCTCCATTTTTATTGCGGGGTGCCGCTGTTTGAAGATCTGAAGGCTCAtggtctgtatgtgtgtggcacCGTTCGATCAAACAGAAAgggaatcccccccccccaaaaccgCCTGCCATGGATAAGCATCAGTACCAAGTGTCTCAGAAGGATGACCTGACCTTCTGTGCTTGGCAGGATACAAAGGTCGTTCTGGTACTGTGAAATTACCACGAGCCCATGGCAGAAGGGACTGTCAGGAGAAGACAGGGAGACATCCAGACAGAGGTCACAGTGCCAGCATGCCTTTCTGACTACCAGAAGCACATGAAGGGGGTCGATCTACTGGATCAGATGATAAGCTACTATCAGTTTCAGCATCGGTCCAAGAAATGGTGGCGGaggctct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU247496 lncRNA downstream 55017 6381208 ~ 6407923 (-) True G182714
TU247492 lncRNA downstream 89742 6372487 ~ 6373198 (-) True G182711
TU247491 lncRNA downstream 101461 6359461 ~ 6361479 (-) True G182710
TU247473 lncRNA downstream 178127 6283518 ~ 6284813 (-) True G182694
TU247463 lncRNA downstream 193797 6267152 ~ 6269143 (-) False cgrrf1
TU247525 lncRNA upstream 113291 6578093 ~ 6593825 (-) True G182741
TU247545 lncRNA upstream 164931 6629733 ~ 6630135 (-) True G182759
TU247548 lncRNA upstream 206439 6671241 ~ 6672648 (-) True G182762
TU247555 lncRNA upstream 245792 6710594 ~ 6711141 (-) True G182769
TU247561 lncRNA upstream 251943 6716745 ~ 6717073 (-) True G182775
XM_039781989.1 mRNA downstream 194014 6232742 ~ 6268926 (-) False cgrrf1
XM_039781991.1 mRNA downstream 195467 6232742 ~ 6267473 (-) False cgrrf1
XM_039781988.1 mRNA downstream 205805 6232742 ~ 6257135 (-) False cgrrf1
XM_039781990.1 mRNA downstream 205878 6232742 ~ 6257062 (-) False cgrrf1
XM_039781992.1 mRNA downstream 215065 6232742 ~ 6247875 (-) True cgrrf1
XM_039781984.1 mRNA upstream 297909 6762711 ~ 6800793 (-) True meis2b
XM_039782002.1 mRNA upstream 980059 7444861 ~ 7588065 (-) False cnih3
XM_039782001.1 mRNA upstream 980059 7444861 ~ 7588065 (-) False cnih3
XM_039782000.1 mRNA upstream 980059 7444861 ~ 7588065 (-) True cnih3
XM_039780984.1 mRNA upstream 1584656 8049458 ~ 8126664 (-) False opn5
TU247260 other downstream 551031 5911312 ~ 5911909 (-) True G182502
TU247229 other downstream 670002 5790289 ~ 5792938 (-) True G182474
TU246982 other downstream 1659470 4745773 ~ 4803470 (-) False smim8
TU247550 other upstream 235689 6700491 ~ 6701117 (-) True G182764
unassigned_transcript_1029 other upstream 562340 7027142 ~ 7027214 (-) True trnak-uuu_18
unassigned_transcript_1030 other upstream 565172 7029974 ~ 7030046 (-) True trnak-uuu_19
unassigned_transcript_1031 other upstream 566845 7031647 ~ 7031723 (-) True trnak-uuu_20
unassigned_transcript_1032 other upstream 568528 7033330 ~ 7033402 (-) True trnak-uuu_21

Expression Profile