RNA id: XM_039782002.1


Basic Information

Item Value
RNA id XM_039782002.1
length 2834
RNA type mRNA
GC content 0.43
exon number 7
gene id cnih3
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 7444861 ~ 7588065 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTGCTCGCTGCTGCTGATAGGTTTGTCAGGAAAaaacagatatttttttaaCGCCTTGTGCAAGAAGTGGCGAGGGGCTCTTCTCATAACACCATCACAGCACAGATACAGCAGAGTTCCTTCTGCCGCTGAATGGATTACCTACATATTCCCCTCTCCCGAATGGTTTTGCGCCCCTCCTCTTTATATTAATAAGCTCCACTCATCGCTGAGAAGAGCGCTGCCTTTCTATGATTACATGATCAATTTACTAACACCGTGGACACTGATCGCTGATCATGCCAAGTGCGCTCATTTGAGACCAGCTTTGACTTCAGAGTCAAATCACCGCTGCTGGGTGGACGCAGACGCACGGCTTATCTGGAGCGGTTTGCTGCAAAAAATTGTTGCAAACATTGTGAGGGGCGAAGTCATGGTGCCGGTACCGCATCGGCTTCTCATGGCACCTTGAGAACTTTCTTCCTgattgcccccttttttttcatCTTGTGGTTTTAGATGTTTGTCAGCGGGATCGTGCTTCTTTGGGAAATTATCCACCGTTTCCCCTTTCAATTATGTTCACTTTTGCTGCCTTCTGCTATATGCTGTCTCTGGTCCTCTGTGTGTCGCTGATCTTCTTTGCAATATGGCACATAACAGCTTTTGATGAGCTCCAGGCTGACTTCAAGGTGCCGATCGATCAGGGCAATCCACTCCATGCGagggagagactgcGGAACATCGAGAGGATCTGCAATCTCTTGAGGAAGTTGGTGCTACCAGAGTACTCCATCCATGGACTCTTTTGCATCATGTTCCTGTGTGCCCAGGAGTGGCTGACTGTGGGCCTCAACATCCCGCTGCTCTTCTACAACACGTGGAGGTACTTCCATTCCCCAACGGACACTAAGGAGCTGCTCTACGACCCAGCATCAGTGATGAATGGCGACACGCTCAAGTTCTGCCTAAAGGAGGCCTGGTGCAAGCTCTCCTTCTTCGTCCTCTCCTTCTTCTACTATCTGTACTGTGTGTGGAACCTGGATATATCCCTCTAATAGATCTTATCAATGGAAACACTTAAAGTATGATCTACTCATTGGTTACCTCATAACAACTGATTTATCAGCAactggaaagaaagaaaaaaagcctcTGGATTCACAGACTGCCACGGTCTAGGTCTAGAATTGAAAGACAGTAATTGTAAAAGTAAAGAAAGGAAAATATTTTCTTCTGTGGAGCCAATCAATGAACTGGATAAGGGTTGAAGCTTCTTTTCTGCTTCATCCCCTTAACAAGGAAGGACATGTTTTATGCTCGCCTGTatataaaaactgaaattaaaagTCCTGTTTACAGTTTCACTGGTCATAGCGAGACCCGAGTTAATCACTGCCTGGCCAACGTTTGTACCACATGCatacgcacgcatgcacacaacacacacaaacacacaaacatacacacacacacaccctcctctGGAGTGATACCATACTTACTATACAGTAGCAGCGCAGGTAGCCCAGAGGACGAAGAGCACAGTAGCGTTTGCACAGTTTGTCTCAGGCACAGCATTGTGAAGCACTGTCCAGCCCAGCACAGCTCACCGACCCTCAGTCATTCCCCCTGGACACCTCACCAACCGTAGCTTAACTGTTGAGCCAGGAGCAAGGGCTAGATGGACAAGTGGACGGATAACATTGTACAGAAAAGAGAATGCACTggaggaaacgccagagcagccAGTTCTTAATAGTTTCCCCCAGACGGCACATACAGTCCATGGCCCGAgggtttttcttttcaacattaTGTGAATGGCTTTTGTGACATGTGCATTTTGGTGTATTCTTTAACAAAAGGCATTTCTAATTGAATTATGATCTACAGCTAAAGGTATTCTATACAGAAAATGCCTATTTAGTGTTATCCTAGTGTCGTTTGATTGTGGGAACATTTTCTAAAACTTAAACTAAAAACTGACACCTGTCCAAGCTTTTATAGTAGGAGCACACATTCTTTGCACAAATAATGTCTTTGATCTTGCACAATATCTGCAATATTTGGCTATATATTTGAGATGATTTATGATAGTCTAGCCACACTGGCGAAGGTCTTCCACCATCTAACGAACTATCCAGCCCTGTCTGAAGATGGGGACACAATGTGAATCTTTTCTAGCTTGATTTACCCCATGGACCAAAATGTAGTTCTTTCAGTATTGCAATCGATTTATTTATCACTATTTGTGATGGCTATACTGATGGCTTGCCTCCATCTCATACAAAATATTACTTTCCAATGTAACCACACCATGATAAGACAGCATATAGTGAATAAAGCAGAGGATGAGAAAGGTGCTAAGCATTGATCTGTCTTTATCTGTGATATCAATAAAAGCAACTGAAGCAGATGATGCAAGTGATACTGTATATGAGATCTGTCCGAGAATATTGATGTACTACTGTATAATGATTCCCAGAAAAGAAAGTTGCTCCCTTCCATATACAAGTCAGAAGTCAAAGGACAAGCTCAGCTAAAGATTATTATCTCTGCAGCTAGAACTCATTTAGAGTCTTGCTTAGAGACACTTCAGCAGGGCAGGAGCTTGAACCTGCATCTTCTATGTGTAGCACTGTTTTCTAACCGCCAGGCTCCTCTAGATCTTCATCATCTTATTCACACAATAAGCTCACTTTGTTAGCTGCTACTCAACGAGCAGCTGGGAATGCCCAATTCTTGTTGTTTTCTCTTACTCTAATTCAAGCATTTTCTATCCTTTCTGTGTATGTGACCGACCAAGTTGAATTTAGATATTGTTTATGaaataaagtattttaaaatcaaa

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005636939.1 lncRNA downstream 58574 7374840 ~ 7386287 (-) True LOC120546796
TU247719 lncRNA downstream 61620 7349782 ~ 7383241 (-) False LOC120546796
TU247721 lncRNA downstream 61620 7349782 ~ 7383241 (-) False LOC120546796
TU247728 lncRNA downstream 68707 7349782 ~ 7376154 (-) False LOC120546796
TU247729 lncRNA downstream 68707 7349782 ~ 7376154 (-) False LOC120546796
TU247784 lncRNA upstream 248528 7836593 ~ 7836797 (-) True G182957
TU247785 lncRNA upstream 249457 7837522 ~ 7837735 (-) True G182958
TU247789 lncRNA upstream 264919 7852984 ~ 7853601 (-) True G182962
TU247814 lncRNA upstream 452558 8040623 ~ 8041804 (-) True G182980
TU247823 lncRNA upstream 459435 8047500 ~ 8047938 (-) True G182983
XM_039781984.1 mRNA downstream 644068 6762711 ~ 6800793 (-) True meis2b
XM_039781999.1 mRNA downstream 980059 6462940 ~ 6464802 (-) True LOC120546794
XM_039781991.1 mRNA downstream 1177388 6232742 ~ 6267473 (-) False cgrrf1
XM_039780984.1 mRNA upstream 461393 8049458 ~ 8126664 (-) False opn5
XM_039780983.1 mRNA upstream 461393 8049458 ~ 8126664 (-) True opn5
XM_039781890.1 mRNA upstream 663651 8251716 ~ 8340747 (-) True LOC120546734
XM_039781889.1 mRNA upstream 663651 8251716 ~ 8340744 (-) False LOC120546734
XM_039781892.1 mRNA upstream 663651 8251716 ~ 8306809 (-) False LOC120546734
unassigned_transcript_1032 other downstream 411459 7033330 ~ 7033402 (-) True trnak-uuu_21
unassigned_transcript_1031 other downstream 413138 7031647 ~ 7031723 (-) True trnak-uuu_20
unassigned_transcript_1030 other downstream 414815 7029974 ~ 7030046 (-) True trnak-uuu_19
unassigned_transcript_1029 other downstream 417647 7027142 ~ 7027214 (-) True trnak-uuu_18
TU247550 other downstream 743744 6700491 ~ 6701117 (-) True G182764
TU247776 other upstream 173500 7761565 ~ 7766386 (-) True G182952
TU247804 other upstream 436650 8024715 ~ 8025044 (-) True G182977
TU247995 other upstream 1195723 8783788 ~ 8787217 (-) False LOC120546397
TU248116 other upstream 1541508 9129573 ~ 9133472 (-) True G183176
TU248390 other upstream 2511538 10099603 ~ 10101061 (-) False LOC120546281

Expression Profile