RNA id: XM_039782011.1


Basic Information

Item Value
RNA id XM_039782011.1
length 4322
RNA type mRNA
GC content 0.50
exon number 13
gene id pak5
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 14244441 ~ 14322141 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GACTGCGCTCATTCGCTCTCCTCAACAGCCCGGATGTAGCACACGGGACCGCACAGTCCTCTTCTCAGTGATAATAACATGGCGCTCGAAGACACATAACGGTGCCCACTATAATAATAACAtccacaaacacaaaccaaaatAAGCTACGGGACATGTGAGCTCTTCGACCCCAAGACAAGCAGtcctccataCAGAACAAGCTGGAGGGATAACATATTCCATCtagcctgggaacgcctcaggaggagctggaggatgTGGCTGGGCAAAAGGATGTCTGGGCTAATCCAGTAAGCGTCCAGCAGAAGACCAGGATTGCCAGGGTTTTCCAGCATGTttggaaagaagaagaaacggCTGGAGATCTCAGCTCCGTCTAACTTTGAGCACCGGGTCCACACAGGCTTCGACCCGCGGGAGCAGAAGTTCACCGGGCTGCCGCAGCAATGGCAGAGTCTCCTGGCGGACACTGCCAACCGCCCTAAGCCCATGGTGGACCCTTCCTACATCACCCCCATCCAGCTGGCACCAATGAAGATATCTCCCAAGAAAGTCCGGTCATCCGAAACGCCGTTGCCCAAAACCATTGTTCGAGGGAACCGGCCACCCAAAGATGCTTCCATCAATGGCCTGCTGGAGGATTTTGACAACATCTCAGTAACGCGCTCCAACTCCCTGCGTAAAGAGAGCCCACCAGGACCCCACCAGGCTGGAAGCAGCTCCAAACCCTCCGGCAGTGGTCACCCAAACGCCCCGGAGGAGAATGGATTCAATCATTACTATTCCCGCTACTCCTGTGACCTAGACACCTCCAGCAGGGACTTCTCTCTTGATCCCAGCAAGCCAAGCTTCTCTATCGATGGGGACTGGGCAGTTGGGAGGCACTATCGATTCACCAAGCAGAATGGTCACTCATACCCCATACGCAGCCCCTTCTACCCGGACGCCATGCCCCAAAAATCTGACTATGGCAAGCTTCCCCCGGACTACCACACCTACTTGGAGAGCAAAGGACGCTCTGCCGATGAGGTGGCCTCCACGGTGGGCAGTGGTGTGGGCTCCAGCGGCTACTATCGGGCGTCTGTGGGTGGCTCATCCAGCCAGGACTACCGGGACACTTCAGTAGGCACGCCATCTCGTGCCTCGCTACACAGCGAGCAGATTAACTACCCAGACAGTGAGTGGAGCTACGGCGGCCTTCGGGACGAATACGAAAAGCGACCCAAGAGTTCCTATGTGACGCAGACCAGCCCCACGCCGGCTATAAGACAGCGATCTCGGTCAGGCTCTGGACTGCAGGAGCCAAATGTCCCTTATGCAGCCAGTGGGGCTTTCAAGAACCCTCCACAGGCCCACCCATACAGCTCCTACACATACCCTCGCCTCTCGGAGAGTCTCACTAACTCACAGACCTTAACCAAGGGTGACTACGAGCGTCCTGCACGGGACGGCAGTCCCCAGGTTACCGGTGGTGACACCTATCCCCGAGGGCCTCTTAAGCAACCTCAGAGCCACATCAAGCCGCCTGGCTACCCGCCGGCACACCTGCCCTACCCTCCTGTCTTTCACCATTACAAACCTTCACCCTACCACCATCCCCCCTCCCAGCCCAGCCCACCGTACACCCCTCAGGGGGCCTACTCACAGCCTTCATCACCCTACATCCCCCCGGGGGCCTACCCGCCTCCTTCCTGGGGCTCCAGCTCCGACACTCAACCCTCCAGAGTCTCTCATGAGCAATTCAGAGCTGCACTTCAATTGGTGGTCAACCCAGGCGACCCTCGGGAATACCTGGACAGCTTTATCAAAATCGGCGAGGGCTCCACAGGCATCGTGTGCATCGCCAGCGAAAAACACAGCGGCAAGCAGGTGGCTGTGAAGAAAATGGACCTCAGGAAACAGCAGAGGAGAGAGCTGCTCTTTAATGAGgTGGTGATCATGAGGGACTACCATCACGAGAACGTAGTTGACATGTACAACAGCTACCTGGTGGGAGACGAGCTATGGGTTGTCATGGAGTTTCTTGAGGGCGGGGCACTCACTGACATTGTGACTCACACCAGGATGAACGAGGAGCAGATTGCTACAGTCTGTTTGTCGGTGCTAAGGGCTCTGTCCTACCTGCACACACAGGGCGTCATCCACCGCGACATTAAGAGCGACTCCATTCTCCTGACCAGTGATGGCAGGatcAAGCTATCAGACTTTGGCTTTTGTGCCCAAGTTTCCAAAGAGGTGCCCAAGAGGAAGTCCCTCGTGGGCACACCCTACTGGATGGCACCAGAGGTCATCTCTAGACTACCTTATGGGACTGAGGTGGATATCTGGTCTTTAGGCATCATGGTGATCGAGATGGTGGACGGAGAGCCCCCCTACTTCAACGAACCCCCTCTGCAGGCCATGAGGAGGATACGAGACAACCTGCCCCCTCGGCTAAAAGAGTCGCACAAGGTGTCCTCGGTGCTGCGGTCCTTCCTAGACCTGATGCTGGTGAGGGAGCCCTCGCAGAGAGCCACTGCCCAGGAACTCCTCCAGCATCCCTTCCTCAAGATGTCTGGACCCCCTTCCTGCATCGTGCCCCTCATGAGACACTATCGCCACCGCTGACCTGTTGGCCCAAAACCTGCCCTCCTCtagactaaaacacacacataaacaccctACCGCTTGGTGGCGCGCCACTAACACTCACACCTGTAACCGTGAAGTAGATTAGCTAGAGGAATATCTAAGAAATTacatttcaaaaaaacacatgacagagaaaagaagaaaaaaatggtcTACCAATGTAAAACTATGAACTGGAGTAGAAGAGTGTACTGTGAGGAACTCACTAGACGTCCTGTCGCAACGCGTGGGCTGGCTCGCCCTGCTGCTGTCTTCTCTCTTCCTAGACTGTGAGTCCTCAGCTCCATGTAGAGTTGTAGTAGCCATCAGCAAGAGCTTCAGAGGGGTGTGGCGAGCTGCTGACGTGGTGGAGGGACCTTGGCGTCCGGTGCTCTGCTCCAGACCAGAGCAGCAGAGGGCAGACCAATCAGCTGCGTGCACAGAGGGGTCTTTGACTAATGACTGTTGTATGGCTGCTGTGTCGTCAGTCCATCTGAAGaacaggctgctgctgctcaaaCAGAGACCAACTCTCTTGTTTTTCTCTTCTCACACACTAAcagtgaaaatgtattttagagAAACTTGTAAGTTTTTCTGTACAGTTTTGATAATTTGCAGTATTTTATCGTGTGGTAACCATTGTGATATGAGCAGTATTAAATAGAGTTTCTGCAGAGATTTTTCCTACTGTTTATAATCCAGTTTTTGCTTAAAGATATAAGAGATATCCCAAATAAACccacctaaacctaactgttactaaaaattctaaatatatttattatctTACATTTGTAGACAGAACTTCCATTAAATGTTGGGGAAAAAAGGGTAATGTCAGAATTTTTTATGACgttttaaagtatttatttatttattggaattgaaggtttatttttttggtaGTGTGGcctttttttggtttattttgttgttcttggagggttttgatttaaatttttaaaagtgCATCACAGACAGTGCTATCTGTTGTTATATCATTCAAGCAATACCCCAAACCTATTTATGAAATCATGAAGCCCTGTATTTATGATACTGTAATTACACCATGCATTTAAATGTAGCACAGATGGAGTGGATTTGACGAAAAAAGATTTACTCTACGCAGACctgttttcttttatataggaGTCTCATCATGTTTCTCTAAATGCTAAGAGGCGTCCATCCAAGACGCCTGCACAGATTTTAGGATGCTGATAAAAGGTCTCGTTTTCTACTCACATCCTCACTGTCATCATCTCACTCCTTATCCCACCTCAGTTAGACACACTACTCGCTATCACTGGAACTGTGCTGCCATTCTCATCTCTAGTCGGACCGGGAGAACAGTGTAATCCTCCTCCCCGCATCGTTTTTACCCATCATTCACTGTGATATGTAAATATGACTGTGCATATGTGGATGTGagcgtgtgtttgtttgtgagtctgtctgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtcaaagagCAAAAGCGGTAGAGCGTGTTTATCTCTGTACAACatctgaaagtgtgtgtgtgtgtgtgcgtgtgtgtgctgctggctAATCCTTGACAATGTGTCAAGACTTGAATGAGTAACACTTATCTGTGGTGTTGGCTTGTACAGTGATATTGCATGTTTGTTATCAGTGAAGCTggtttcaattaaaaaaacgcCCATAAAAACATT

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005636876.1 lncRNA downstream 1166 14238426 ~ 14243275 (-) True LOC120546499
TU249450 lncRNA downstream 12736 14187428 ~ 14231705 (-) True G184208
TU249466 lncRNA downstream 19222 14222975 ~ 14225219 (-) True G184217
TU249445 lncRNA downstream 102635 14119022 ~ 14141806 (-) True G184204
TU249399 lncRNA downstream 401964 13842272 ~ 13842477 (-) True G184162
TU249559 lncRNA upstream 71306 14393447 ~ 14394111 (-) True G184286
TU249562 lncRNA upstream 86847 14408988 ~ 14409257 (-) True G184289
TU249563 lncRNA upstream 92115 14414256 ~ 14416171 (-) True G184290
TU249564 lncRNA upstream 94731 14416872 ~ 14417248 (-) True G184291
TU249565 lncRNA upstream 101012 14423153 ~ 14424847 (-) True G184292
XM_039782651.1 mRNA downstream 257040 13981265 ~ 13987401 (-) True bmp2b
XM_039782650.1 mRNA downstream 287303 13946704 ~ 13957138 (-) False fermt1
XM_039782649.1 mRNA downstream 287304 13946704 ~ 13957137 (-) True fermt1
XM_039782334.1 mRNA downstream 299608 13938613 ~ 13944833 (-) True trmt6
XM_039781103.1 mRNA downstream 326317 13911571 ~ 13918124 (-) True LOC120546266
XM_039782360.1 mRNA upstream 13498 14335639 ~ 14359390 (-) False LOC120547016
XM_039782357.1 mRNA upstream 13498 14335639 ~ 14359390 (-) False LOC120547016
XM_039782358.1 mRNA upstream 13498 14335639 ~ 14359390 (-) False LOC120547016
XM_039782359.1 mRNA upstream 13498 14335639 ~ 14359390 (-) False LOC120547016
XM_039782356.1 mRNA upstream 13498 14335639 ~ 14359390 (-) True LOC120547016
TU249319 other downstream 753313 13481924 ~ 13491128 (-) False mfsd2b
TU249306 other downstream 776376 13458616 ~ 13468065 (-) True fkbp1b
TU249194 other downstream 1028617 13206307 ~ 13215824 (-) False hmgn3
TU249578 other upstream 150060 14472201 ~ 14498370 (-) True G184299
TU249614 other upstream 249614 14571755 ~ 14579169 (-) False naa30
TU250064 other upstream 1466773 15788914 ~ 15791558 (-) False si:dkey-177p2.18
XR_005636881.1 other upstream 2168509 16490650 ~ 16517872 (-) False snap91b
XR_005637006.1 other upstream 2507655 16829796 ~ 16835983 (-) False gpatch2

Expression Profile