RNA id: XM_039782028.1


Basic Information

Item Value
RNA id XM_039782028.1
length 3465
RNA type mRNA
GC content 0.50
exon number 10
gene id tshr
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 11893534 ~ 11918141 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCTACAGCATCCCCACCTTCACAGCCTCACAGAAACTCCTGGGGCCCTGAAGAGAAAACTGAACATCCAGAGTCCAGCTCTActgtctgtctctagcctaTACCTGAGGATTACACtccaaaaaagataaaataacatCATTAGACTAGACTGGCTtacttcaaatttggttcaaaTTGATGCTGTGGACATCAAGAGGACTAGCTGTCAAGAAAAACAGAAGTCAGCCTGGGGGATATTTTTGAGCCGAAAAGTGAAAGCGAGCAGCGCGCCAGCATGCAGGTGATAACTTGTGCGTTGTTTACGCTCGTCACTCTCCCTGTCAGCAGCGTGTCGGAGGCTGACTCCTGCCCTGCTGTCTGCGAGTGCTCCGAGTGGAAGGCTCACACAATCTCCTGCTTTGACATTGATATTCTCCCCAGGTTTCCAGCAAGCACGGATACACTATGGCTTTTTGAGACCCACCTGTCATCCTTGCCAGCAGACGCCTTTGCCAACATGGTCAACATCTCAAGGATATATATATCAGTGGACGTGACGCTGAAGAGGCTGGAGAGGCACTCGTTCTACAGCCTGAGGAAAATCACCCACATTGAGATACGTAATGCAAAAAGTCTGACCTACATCGACCCAGAAGCCTTTAAAAATCTCCCAAACCTCAAATACCTGGGAATTTTCAACACcggcctctctctcttccctgaCTTGAGCAACATCCACTCTAATGACATGAACTTCATACTGGAAATTGTTGATCATCCCTACATCACTGAGATCCCGGCCAACGCATTCCGTGGCATCACCAGCGACGTGCTGACAGTGATGCTGTATGGAAATGGCTTCAGAGAAATCCAACATCATGCCTTCAATGGGACCAAGCTAGATCAAGTAGACCTTCACAGGAATAAGTATCTTAACAAGATGGATGAAAGGGCTTTTTCCGGCACCATCAGCGGCCCCATGCTTCTAGACGTGTCCCTGACCGGGATCACCTCCCTGCCAACCACAGGTATGGATTCTATCCGCGAGCTGAAGGCGCGCAATGCCTGGGCACTCAAAAAACTGCCGCCCATCAAAACCTTCAAGCACCTCACCATCGCCAACCTCACCTACCCCAGCCACTGCTGCGGCTTCAAAAACCTCAAAAAGAAACGAGGCTTTTTGGAGTACATCATCTGTAACCTGACTGCCTTCTACGACCAGCATCACAAGCGCTCGGTGGGGCCCCTCGGCGTGCCTTCCCTCCAAGGGGACGGCGTGGTGGAAACGGTCCCAGACCAGGAGCCGAATGACGGGAGCCACAGAGAGTCCGAccactggaggagaggagacttCCATGGAAGCCTCCACTACCACGCCTACTTTGGTGGCCAGCCAAATGAGGATGTGGGTTTCGGAGAGACCCTCAAGAACCCCCAGGAGGACACCAGCCAAGACTTTGACAGTCGTTACGATTACGTGGTCTGTGAGGAGGGCGAGGAGGTGGCGTGTGCGCCGGTGCCCGATGAGTTCAACCCTTGCGAGGACATCATGGGTTTCGGCTTTCTGCGAGTGTCTGTGTGGTTTGTGAGTCTGCTGGCTGTTCTGGGAAACGTGGCGGTGCTCCTGGTGCTGCTCACCAGCCACTACAAGCTCTCCGTGTCCCGCTTCCTAATGTGTCACCTGGCCTTCGCCGATCTGTGCATGGGGATTTATCTGCTGCTCATCGCCTCGGTGGACCTCCACACGCGAGCCGAGTACTTCAACCACGCCATAGACTGGCAGACGGGCCCCGGCTGTGGACTCGCTGGGTTTTTCACAGTCTTCGCGAGCGAGCTGTCCGTCTACACCTTGACGGTGATCACTCTGGAGAGGTGGTACGCCATCACCTTCGCTATGCGGCTGGATCGGAAGCTGCGTCTGCACCACGCGGCGGCCGTGATGCTGGCCGGCTGGATCTTCTGCCTCCTGCTGGCCCTGCTCCCGCTGGTCGGGGTGAGCAGTTACCAGAAGGTCAGCATCTGTCTACCGATGGACACCCAGTCCACGGTGGCTCAGGTCTTCATCTTGTCCGTGCTGGTGCTCAACATCCTGGCCTTTCTTGTCATCTGCGCTTGCTACTTCAAGATCTACTGCGCGGTGCACAACCCTCACTACCGCTCCGGATCCAAGGATACCAACATCGCCAAGCGCATGGCTGTGCTCATCTTCACTGACTTCTTGTGCATGGCGCCGATCTCCTTCTACGCCATGTCGGCGGTGCTGGACCGGCCGCTCATCACTGTCTCCAACTCCAAGATTTTATTGGTGCTGTTCTACCCGCTCAATTCCTGCGCCAACCCGTTCCTCTACGCCATCTTCACCAAGGCCTTCAGGGGGGACATATTTATCCTCCTCAGTAAGGTGGGCCTCTGTCAGCAGCGAGCGCAGCTGTTCAGAGGCCAGACGGTCTCGTCAAAGGGCAGCAGCGGGATATCTCAGGTCCGTAGAGACAAGGATAAGGTTAGGAAAGGTGGAAGCAGAGGCCAGGAAGAGTTGCCCATCCACCTGAAGAAGTGCTCCGGACATACCTGCCATCAAGCCGTCTGCCAGCAGACGAGCCCTGAAGAGAACCAGAGCCTGAAGACGTGAGCCAATCACCCGCTTCAAGTAGTAAAGCAAGACAGGTTCAGGTGGGAGAGGAGAGGCCTTCAAGTGTTTGTGGACAGATCTGTTTGGATATTTAACAGAAAGCTCCAGTATTCTGTATCTGCTTTAGTTTTTCAGGCCAAGTTCAGCTGTTTTCACAATTTGGGCTTGGATGATTTTATGGTTCCAGTTGTTGGAGAATATCAAGTGTCTCTGAAATGTGAGCCCGACTTCATCTAACTTATAGTGCTTTGTATTTGGAGGGACAGGctagaaaagaaaagattatTTTAAGGAAATATAGTAATGATTaaaactatacacacacacacacacacacacacacacacacacacacacacacacacacgattttTCAGTatctttaatttagttttacctCTGCACAGTCTAGCATTGATATATAAGGAAATATGACAGATCTTTAAAACTAAACTTTCCTGCGATAAGACCTTCCTAAGTCGCTCTATTCATTCTTGGCTATTTTGTTAAAGGACAGCCTGCTGGCTCAGTGCGGTTCACAGtgaaaacttgttttaaatgtttttaaatgtaaaaacactGCATCTATTATTGTCTAATCAATACCTCTGGATATAATGTCAATACCCGACAGTGTTTGATGATTTATGGATGAAAACAGGACACAttggtgtttttttgtctgttaaCCTGAAACCCTAACCctgaaactgaaaagaaaacatGGACAGGTATAGTACAGTACTTCTGTGATGTTGGAAAGTGGACACTAAAATTGTACTTTTATGTGGCTTATACCTGAACAAAATTGATGTATCACTTTCGTAGATTCATAAAAATAGTTGTGTACTTGTG

Function

GO:

id name namespace
GO:0038194 thyroid-stimulating hormone signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004996 thyroid-stimulating hormone receptor activity molecular_function

KEGG:

id description
K04249 TSHR; thyrotropin receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248878 lncRNA downstream 7028 11884577 ~ 11886506 (-) True G183792
TU248874 lncRNA downstream 24378 11867161 ~ 11869156 (-) True G183788
TU248866 lncRNA downstream 105213 11788001 ~ 11788321 (-) True G183781
TU248829 lncRNA downstream 145941 11747131 ~ 11747593 (-) True G183753
TU248823 lncRNA downstream 193569 11699052 ~ 11699965 (-) True G183747
TU248899 lncRNA upstream 84576 12002717 ~ 12017897 (-) False G183813
TU248901 lncRNA upstream 84576 12002717 ~ 12025499 (-) True G183813
TU248977 lncRNA upstream 562392 12480533 ~ 12480930 (-) True G183870
TU248979 lncRNA upstream 586544 12504685 ~ 12505015 (-) True G183872
TU248982 lncRNA upstream 600231 12518372 ~ 12521754 (-) True G183875
XM_039781106.1 mRNA downstream 220445 11659994 ~ 11673089 (-) True kcnk13b
XM_039782501.1 mRNA downstream 243474 11638846 ~ 11650060 (-) True LOC120547092
XM_039781838.1 mRNA downstream 259204 11619704 ~ 11634330 (-) True LOC120546716
XM_039781328.1 mRNA downstream 317477 11575473 ~ 11576057 (-) True LOC120546403
XM_039782719.1 mRNA downstream 345184 11546186 ~ 11548350 (-) True LOC120547228
XM_039781091.1 mRNA upstream 109407 12027548 ~ 12358231 (-) False nrxn3b
XM_039781084.1 mRNA upstream 109407 12027548 ~ 12358230 (-) False nrxn3b
XM_039781082.1 mRNA upstream 109407 12027548 ~ 12358230 (-) False nrxn3b
XM_039781098.1 mRNA upstream 109407 12027548 ~ 12358230 (-) False nrxn3b
XM_039781097.1 mRNA upstream 109407 12027548 ~ 12358230 (-) False nrxn3b
TU248695 other downstream 518919 11374108 ~ 11374615 (-) True G183650
XR_005636937.1 other downstream 1282909 10501920 ~ 10610625 (-) False LOC120546776
TU248535 other downstream 1372124 10520717 ~ 10521410 (-) True G183528
TU248390 other downstream 1792473 10099603 ~ 10101061 (-) False LOC120546281
TU248116 other downstream 2760062 9129573 ~ 9133472 (-) True G183176
unassigned_transcript_1080 other upstream 665028 12583169 ~ 12583241 (-) True trnat-ugu_2
TU249125 other upstream 1042357 12960498 ~ 13007868 (-) True LOC120547209
TU249198 other upstream 1275936 13194077 ~ 13215824 (-) False hmgn3
TU249194 other upstream 1288166 13206307 ~ 13215824 (-) False hmgn3
TU249195 other upstream 1288166 13206307 ~ 13215824 (-) False hmgn3

Expression Profile