RNA id: XM_039782057.1


Basic Information

Item Value
RNA id XM_039782057.1
length 2775
RNA type mRNA
GC content 0.43
exon number 8
gene id LOC120546832
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 24498746 ~ 24506389 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAGGCTGAACCGAGCCTACAAGTCAGTGTTCAGGGACCTATTACCCAGAGAGCCTGCCACTGTGAGAGTATCAGAAACATGGCGGAAAGCGAGTTGAACGTTGACAGCCTCATCTCTCGACTACTGGAAGTGCGAGGATGTCGTCCAGGGAAGGTCGTACAGATGACAGAGGCTGAGGTGCGGGGGCTCTGCATCAAGTCCAGAGAGATTTTCCTCAGTCAGCCGATCCTGCTAGAACTGGAGGCTCCACTCAAAATCTGTGGTGATATCCATGGACAGTACACAGATTTGCTGAGGCTATTTGAGTATGGCGGCTTCCCTCCAGAGGCCAACTATCTGTTCTTGGGGGATTACGTGGACAGAGGGAAGCAGTCGCTCGAGACCATCTGCCTACTGCTCGCCTACAAGATCAAATACCCAGAAAACTTCTTCTTGCTCAGGGGGAACCACGAGTGTGCATCCATCAATCGCATCTACGGCTTCTATGATGAGTGCAAGCGTAGGTTCAACATAAAGCTCTGGAAGACCTTTACAGACTGTTTTAATTGTCTGCCCATCGCTGCGATTATTGAtgaaaagattttctgctgcCATGGAGGGCTCTCACCTGATCTACAGTCCATGGAACAGATTCGACGCATTATGAGGCCCACTGATGTCCCAGATACAGGCCTGCTGTGTGACCTGCTGTGGTCAGACCCAGACAAAGACGTCCAGGGATGGGGGGAGAACGATCGGGGAGTTTCCTTCACCTTTGGGGCCGATGTGGTCAGCAAGTTTCTCAACCGACATGACCTGGACCTCATCTGCAGGGCACATCAGGTTGTTGAAGACGGCTATGAGTTCTTTGCCAAGCGACAGCTGGTGACGCTGTTCTCTGCCCCCAACTACTGCGGGGAGTTTGACAACGCAGGCGGCATGATGAGTGTGGACGAGTCCCTTATGTGCTCCTTTCAGATCCTGAAGCcgtcagaaaaaaaagcaaaatacCAGTACGGAGGGGTGACTTCAGGGCGCCCTGTCACCCCGCCTCGCACCACTCAGGCACCGAAAAAGAGGTGAGCAGCTGGCCCTGACTCTCCTGCTCCTCCCCCGGCTGGTCTCTGACTCACGTCCCTGCAGGCAGCCTCAAACACTCCAGCTTCTCTCAGTCAGCTTGTTCATGTGTAAACAAAAACTCCatgagtgttttattttttttgttttgttctgtgggtatttttatgaacatGCGAGTGGtattttttccatttcttttttgaTGCCATTGTATTAACTCAGCCCTCACTTCTTCTACTCACTCCATTCAGCAATATTTAAACCAAACTCTTGTGGAATGGCAGAAAAGATGACAAACAATTTCCATAGTAATGTTGTGAATGCATGCACGCTTGTGAGATTGAGACGGGTTATTTGCCCTAACTGATGTAAAATCCATAGATTCTCTTCTCACCTTAATTTGTATAATGTTCATGTAATTAACTGCCATACATTGGCTGAAGAAGTACACGGCTTAAAGGAATAGcatgacattttgggaaatatgcttatttgctttattGCAAAGAGGTAAATGAGGAGGTCGACACCACTCTCCTGTCTGTCATATAGTAAACCACCACCAGCAACTGGCTAACTTAGTTTAGCACAAAGAATGGAAATGGGGGGTGGGACAGTTAGCCTTGCTCCGTTAACGGTAACAAACTTCACCTACTGGCTTTTTAATGAACATGCAAcgctttttttttgtactgaGTAAACAAATGATCAAAGATATAACATGTAGTTAGTGAATTGATCTTCCCATCTAACTCTTGCCAAGTAAGCGACtgagcgtatttcccaaaatgtgaaATTGTTCCTTTAAGAATCGCAAGTTAGACATTGCTGACTTACCCTATGACTTAAGAATGTGTTTTCTCCCCAAAGAGATGTCAAAATCTTAAGATTTTGTAGATGTAAGTGCAGGAAATAATGCAAAAATCTTGCCACATGCAAGCATAAACAAAAGGCCATTCAAGCCTATTTGAACTTTTTTAAAGGACACAGCCAATCTATGCTGTACCTTTACTAGGGCATTCATGTACAGTAGATGCTCTACATTAGATTAGCATTCCCAAGCTCAAACTTTTTAATCCCTCACATCACTGAAGTTTGTGTTGGTTAAAGAGCAGCATTTCCATTGTTGGTATAAACAAATGGGAAAACAGAGCAATGCAATAGCATAACGGTTTCATTTTCAATTCTGATGTGAATTCAGTGTATGTGAAAAATGTGGGAATCAAACACCAGTGAGCACTTTGAGTATGTCCTTTAATCTGGTGAGTACAGTAGGTGTGTAGAAAAGTAGAGATGCCAGTGCAAGAGAAGAAGGTAAATGAAAGAAATATGAAGACCCGGCAGAAACTGACAGAATTAATAGTTGCCAGTATATTCATCTTCACAGTTGTAGATGTGGACTTCTCACACGCTAAACATTGTTGCACTTCCAGTCATCGCATGACATTGTAAAGAGGTCAAAATCATCAAGGCAAGACGATGgcgttttgtttgttgttggctAGTTCAATTATAGTGTTTCCACTAAGCGGTTATTGAATGAAGAGAATCATTTCCAACTCCTTAATAAACATTTGaccaatgtatttttatttatttcaatctTGCCTTTTGCCTTGTAAATCTATTGGTCTTCAAGTTGGAAACAGTATGTTAAGACGTTTTGAGATTTGTTAGTTTGtttgaaaagagtgaaataaaTGGAAGTGCTCTTAA

Function

GO:

id name namespace
GO:0016311 dephosphorylation biological_process
GO:0004721 phosphoprotein phosphatase activity molecular_function

KEGG:

id description
K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU253454 lncRNA upstream 111578 24386956 ~ 24387168 (+) True G187074
TU253387 lncRNA upstream 263995 24211413 ~ 24234751 (+) True G187027
TU253347 lncRNA upstream 310882 24185289 ~ 24187864 (+) False extl3
TU253322 lncRNA upstream 351528 24072763 ~ 24147218 (+) True G186972
TU253548 lncRNA downstream 130336 24636725 ~ 24639484 (+) True G187158
TU253556 lncRNA downstream 149581 24655970 ~ 24656643 (+) True G187165
XR_005636936.1 lncRNA downstream 503124 25009513 ~ 25012350 (+) True LOC120546772
TU253634 lncRNA downstream 503141 25009530 ~ 25012241 (+) False LOC120546772
TU253656 lncRNA downstream 604657 25111046 ~ 25115288 (+) True G187212
XM_039781350.1 mRNA upstream 13147 24446908 ~ 24485599 (+) True LOC120546425
XM_039781804.1 mRNA upstream 62423 24419260 ~ 24436323 (+) True rars2
XM_039781805.1 mRNA upstream 62423 24419607 ~ 24436323 (+) False rars2
XM_039782704.1 mRNA upstream 80946 24413847 ~ 24417800 (+) True akirin2
XM_039782880.1 mRNA upstream 86416 24408071 ~ 24412330 (+) True cnr1
XM_039782343.1 mRNA downstream 9055 24515444 ~ 24518183 (+) True grcc10
XM_039782287.1 mRNA downstream 23942 24530331 ~ 24630590 (+) False LOC120546974
XM_039782288.1 mRNA downstream 23942 24530331 ~ 24630590 (+) False LOC120546974
XM_039782291.1 mRNA downstream 23942 24530331 ~ 24603824 (+) False LOC120546974
XM_039782289.1 mRNA downstream 28333 24534722 ~ 24630590 (+) True LOC120546974
TU253325 other upstream 415642 24079603 ~ 24083104 (+) True G186975
XR_005636956.1 other upstream 909057 23578378 ~ 23589689 (+) True nfkbie
XR_005636955.1 other upstream 910232 23578378 ~ 23588514 (+) False nfkbie
TU252499 other upstream 2433157 21985779 ~ 22065589 (+) True G186394
TU252459 other upstream 2551746 21944743 ~ 21947000 (+) True erh
TU253479 other downstream 524 24506913 ~ 24507813 (+) True G187094
TU253601 other downstream 497630 25004019 ~ 25009407 (+) False lama2
unassigned_transcript_1083 other downstream 713479 25219868 ~ 25219940 (+) True trnat-ugu_3
TU253978 other downstream 1521671 26028060 ~ 26030400 (+) False nudt14
TU254022 other downstream 1770306 26276695 ~ 26281368 (+) False gareml

Expression Profile