RNA id: XM_039782063.1


Basic Information

Item Value
RNA id XM_039782063.1
length 2615
RNA type mRNA
GC content 0.59
exon number 9
gene id fzd3a
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 10347000 ~ 10379127 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGCCTCCCGGTTCCGTTAGTTGTCGAAGCTATACACGCTCACATTTATGAGGAGCAGTTCATTTATGAATTCCCTGCTCGGAGCTTATAGGAGGAGCCCGTTCATATTGACGCACAGGCTGAAGATCACATCCACCGGTGGTGGTCATCCATATTTTCTGTGAAGCATTCATCAGTGTTGGTGGAGgcaggagagggaggagtgcGAGCGGTCACAGCGCAGCATCTTAAAGGACCACAGCATCTCCCAGGCTATGGAGGTCTCGTGATGACACACTGCTGCCGCTGACCGGAATCCCCCACGGCGATGGAGGCAGCCAGCTTCGACCATGGCCGTGTTGGATTACGATGCCCGACCCAGACCATTTCTCTGTGAGTTGAAGAGGAGGAAGCGACTACCAGCCAGCCCTGGACACTCCTTAAGCCTTGTGATCTCCCTTTCCTGGTGAATGAGCCAGACGCTAACAGGGCTCAACCCCTCTTCCTAGCCAGCCGTCCTCCTCCTGCTGggtcttttcttctctcctacTGTACCGACCAGTCATGGATCTCCTGTGGTTGCTGTCCCTGTCCATGTTGACGGCGTGCGTCGCCATCCCCATGGATGTGGCAGAGGGGAGCCACAGTCTGTTCACCTGCGAGCCCATAACCCTGCGCATGTGCCAGGGGTTGCCTTACAACTCCACGTACATGCCCAACATACTGAATCATTACGACCAGCAAACTGCCGCCCTCGCCATGGAGCCGTTCCATCCCATGGTGAACCTGCAGTGCTCTCCGGAGCTCAGGATGTTCCTGTGCGCGCTCTACGCCCCGGTGTGTACCGAGTACGGGCGGATGACGCTGCCCTGCCGCCGCCTCTGTCTGCAGGCCAAGAGCGACTGCTACAAACTAATGGACATGTTTGGTGTCAGCTGGCCGCAGGAGATGGACTGCGACAGATTCCCAGACTGTGACGAGCCTTACCCCCGTCCCGTGGACCTCCTGTCCAGCTCAGACACAACCGAATCGCCCGTTGCCGTCCAGCGGGACTACGGCTTCTGGTGTCCCAGAGAGCTCAAAATCGACCCAGAGCTCAGCTACTCCTTCATGGGGATCCGCGACTGCTCTCCCCCCTGTCCCAACATGTACTTCACGCGCGAGGAGCTGACGTTCGCACGCTACTTCATCGGGGTGGTGTCCATCGTCTGTCTGTCCGCCACCCTCTTCACCTTCCTGACCTTCCTCATTGATGTGTCACGATTCCGCTACCCAGAGCGTCCAATCATATTCTATGCTGTGTGCTACATGATGGTGTCTCTAGTGTTCTTCCTGGGCTTTCTCTTGGAGGACAAAGTTTCCTGTAACTCAGCGAGTCCTGGGAGGTTTAGGGCTTCAACAGTGACCCAAGGCTCCCATAATAAGGCCTGCACCCTTCTCTTCATGGTGCTGTATTTCTTCACCATGGCCGGCAGTGTCTGGTGGGTCATTCTGACCATCACCTGGTTCCTGGCTGCTGTTCCCAAGTGGGGCAGTGAGGCAATAGAGAAGAAGGCCCTCCTCTTCCACGCCTGTGCCTGGGGCATCCCCGGCGTCCTCACAGTTAGCCTGCTCGCCATGAACAAGATCGAGGGCGACAGTGTCAGTGGGGTTTGCTTTGTGGGGCTTTACAACCTGACGGCCCTGCGCTGGTTCCTGCTGGCCCCACTGGGGTTGGACGTAGTGGTCGGTGTGGCGCTGCTGCTGGCAGGCATAGCAGCACTAAACCGAGTGCGCATGGAGATTCcgctggagaaggagaaccaggagaaaCTGGTGAAGTTCATGATCCGTATCGGCGTGTTCTCTGTGCTCTACCTGGTCCCTCTGCTGGCCGTTCTGGCCTGCTACCTTTATGAGAACAGCTACCGTGCCATCTGGGAGACCACCTGGGTCCAGGAGAGGTGTCGAGACTATCACATCCCCTGCCCCTACCAGGTGGAGCGCACCAGTCGCCCTGACCTGGCTGTGTTCCTGGTTAAGTACGTGATGATGCTGATCGTAGGAATCCCCTCGGTGTTCTGGGTGGCCAGTAAGAAGACCTGCTTCGAGTGGGCCAGCTTCTTCCACGGCAAGAGACGCAAAGACAGGATGGTCAACGAGAGCAGACAGGTGCTCCAGGAGCCCGACTTCGCCCAGCTGCTGCTCAGGGACCCCAACGCGCCCATCGCGAGGAAGTCCCGGGGCACGTCCACCCAGGGGACCTCCACCCACGCCTCGTCCACCCACCTGGCCATGCTGGACGAGCCGCCCAGCGGCAGCACCAGCCGGGCCGGCTCGGTCCGCAGCGCACGCTCCAAGATGAGCAGCTACCACGGCAGCCTGCACCGCTCGCGGGACGGCAGGTACACGGCCTCCAGCTTCCGGGCCGTGGACGACCGGCTGCCCTACGGAAGCATGTCCCGCCTCAACGACCAGTCCAGACACTGTAGCACCAATCGCCTGGACAACCTATCGCGGCACGGCTCCACTCAACGACTGGAGAGCCAATCACGGCACAGCAGCGTCCGGGACCTCACCAGCACCACCCAAGCTGTCCTCGGTATCCCCGGAAACGGGATTCACCGAGTCCTGGAGGAGGACGGAGCTACAGCCTGA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0021754 facial nucleus development biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248503 lncRNA downstream 114573 10220918 ~ 10233568 (-) True G183497
TU248497 lncRNA downstream 131015 10216351 ~ 10217126 (-) True G183492
TU248447 lncRNA downstream 170572 10176900 ~ 10177569 (-) True G183457
TU248448 lncRNA downstream 172786 10174736 ~ 10175355 (-) True G183458
XR_005637025.1 lncRNA downstream 281855 10064593 ~ 10066286 (-) True LOC120547073
TU248537 lncRNA upstream 178752 10557487 ~ 10558119 (-) True G183530
TU248538 lncRNA upstream 187181 10565916 ~ 10566164 (-) True G183531
TU248541 lncRNA upstream 212345 10591080 ~ 10591338 (-) True G183534
TU248626 lncRNA upstream 376261 10754996 ~ 10780282 (-) True G183594
TU248658 lncRNA upstream 569081 10947816 ~ 10948114 (-) True G183616
XM_039782751.1 mRNA downstream 119136 10226816 ~ 10229005 (-) True lft1
XM_039782756.1 mRNA downstream 139816 10178309 ~ 10208325 (-) True kif26bb
XM_039782754.1 mRNA downstream 174163 10148075 ~ 10173978 (-) True cnstb
XM_039782755.1 mRNA downstream 174819 10148075 ~ 10173322 (-) False cnstb
XM_039782752.1 mRNA downstream 210365 10136000 ~ 10137776 (-) True LOC120547244
XM_039782068.1 mRNA upstream 20067 10398802 ~ 10449410 (-) False fam49a
XM_039782069.1 mRNA upstream 20067 10398802 ~ 10449410 (-) False fam49a
XM_039782067.1 mRNA upstream 20067 10398802 ~ 10449410 (-) True fam49a
XM_039781966.1 mRNA upstream 76509 10455244 ~ 10610625 (-) False LOC120546776
XM_039781967.1 mRNA upstream 123185 10501920 ~ 10610625 (-) False LOC120546776
TU248390 other downstream 247080 10099603 ~ 10101061 (-) False LOC120546281
TU248116 other downstream 1214669 9129573 ~ 9133472 (-) True G183176
TU247995 other downstream 1560924 8783788 ~ 8787217 (-) False LOC120546397
TU247804 other downstream 2323097 8024715 ~ 8025044 (-) True G182977
TU247776 other downstream 2581755 7761565 ~ 7766386 (-) True G182952
XR_005636937.1 other upstream 123185 10501920 ~ 10610625 (-) False LOC120546776
TU248535 other upstream 141982 10520717 ~ 10521410 (-) True G183528
TU248695 other upstream 995373 11374108 ~ 11374615 (-) True G183650
unassigned_transcript_1080 other upstream 2204434 12583169 ~ 12583241 (-) True trnat-ugu_2
TU249125 other upstream 2581763 12960498 ~ 13007868 (-) True LOC120547209

Expression Profile