RNA id: XM_039782075.1


Basic Information

Item Value
RNA id XM_039782075.1
length 6951
RNA type mRNA
GC content 0.47
exon number 25
gene id jag2b
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 26047472 ~ 26102398 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAGATTTTAATGATTTCAATGAAACGACGCctgatataaaaacaaaaaaacgtccAAATATTTTCCAAATAAAGACTGCAATTAAATTCAAGACAGCACCTTTGAGCATCTTAATTTGAAATAACAGCCCTACTCATCATCATATCTTTGCGGGCGCGTTTAATTAAAGTCGACCCGTGCTTTGTTCGCATGCTGTAATGCGGTCTGTCCAAATGAAGCTCAATACAAAACCCCAGCATAGGCTAATTCAAGTTTtgggaggaggaagagcaggatgaggaggagaaggagggttGGTGGGGGTATTACACTATTGTCCGCCCCTTAATCCGGTTGGCTCAGAGACTGCCCGCAGGCCAATTTGTAAGTGGTTTGCGGAGCTGCCAATCAAAGCAGACATCCTCTCCTCAGGCTGTGGCTACGAACATCTCAGTTGCTGCGTGGAGAGATTTGACGGAGGGACACTCCTGTGCATGGACCATCGCTGCGCTGCAATCCGCCGCCTGCTCAACGTGAAATCTGGACGTTCACGGTGGAGAAAACACgcatgtgaatattttctttttgcatGTCAGGAGAGGAGGAACTAGTCGCCGGGTCCGCGGCTGTTTGTCTTTTCGTATCGCTTCTCCCCTCCGATGTCACTCTAATTAACCGGAGGCATGTGGAATCGCACCAGGATTAACGTCAGGAATTGCTTCCCAATATTGTGCCTCCTGTTAGCGTTATGGGCAGAGGTGTCCCAGTCAACCGGCTATTTCGAGCTGCAGCTGACCTCCGTGGAGAATCTAAATGGCGAGTTGGCGGACGGGGAGTGCTGCGACGGCACCAGGAACTCCCAGGACCTGCGCTGCACTCGAGACGAGTGCGACACTTACTTTAAAATCTGCCTGAAGGAGTACCAGATGGAGGTCACCACCAACGGCCCCTGCACGTTCGGAGCTGGATCTACTGAAGTTCTCGGTGGAAATATGTTTTCTGTTACAAGCGCAAAGATGAACCCGAATAAGATTTTGATCCCCTTCCAGTTCGCCTGGCCGcGGACATTCACCTTGATTTTAGAGGCCTGGGACTGGGACAACGGCACACGGAACAttGATGAGGAGCTGCTAATCGAACGCAGCATTCGCACTGGAATGTTCAATCCAGGCGACCCCTGGCAGACCATCGTGTACGACGGGCCGGTGGCTCGCCTCGTCTATCGCATCAGAGTGCGGTGCGATGACAACTACTATGGCAACAAGTGCAATAAGCTGTGTGTACCGCGTGACGACTACTTTGGCCATTATCGCTGCGAGCCTTCAGGGGCCCAAGTGTGCCTGAATGGCTGGATGGGCTCAGACTGCAGGACAGCGATCTGCAAGCAAGGCTGCAACCTGTTACATGGCAGCTGCTCTGTCCCAGGGGAATGCAAGTGTAGCTATGGCTGGCAGGGACAGTTCTGTGATGAATGTGTTCTCTACCCCGGATGCGTCCACGGGACCtgcaacatccagtggcagtgcaACTGCGAGAGGAACTGGGGTGGACTGCTGTGTGATAAAGATCTAAATTACTGCGGTCGCCACCAGCCCTGTGTCAACGGAGGGACTTGCATGAACACCGAACCAGATGAGTACTACTGTGCCTGTCCACAGGGATACTCTGGCAAGACCTGTCAGATAGcGGAACACGCCTGTGTTTCCAATCCTTGCGCCAACGATGGTACATGCCACGAGGTTCCCACAGGTTTTGAGTGCCTGTGTCCGCCGGGCTGGGAGGGTCTGACCTGTGCCAACAATTTGGACGAGTGTGCCTCCAGTCCATGTGCTCAGGGTGGAACATGCATCGACCTGGAGGACGGCTTCGAGTGTGTGTGCCCTCCACAGTGGGAGGGAAAGACATGCCAGATAGACATCAATGGCTGCAACGGACAGTGCCTCAATGGCGCAACATGCAAGGAGGGCCCGCGGGGTTACCACTGCCAGTGTCCTCCAGGTTTTGTGGGCACTCACTGTGAAATCCAGAGGAATAAGTGTGACAGCAGACCATGCCAGAACGGCGGCCGGTGCCACACGGTGTTGGACGGCTTTGTGTGTCAGTGCCCACCACAGTTTGCTGGACAGCTGTGTGAGATCTCTGGCTGGTCCCCCTCAGATGCTTGTGATCCAAACCCTTGTGAGAATGAGGCCAAGTGCCACAGCATGGACCAGGACTTCTACTGTGCCTGTGCCGAAGGCTACGAGGGAAAGACTTGTGAACTGCTTAAGGAGAACTGCCAAACCACCCCCTGTCAAGCGATTGACAGCTGCATTGTTGCTGTAGCGACCAACGACTCAGTTGGAGTGCGGCACATCTCCTCCAACGTCTGTGGTCCACAAGGACGCTGCATCAGCCAGCCAGCGGGCAACTTCACCTGCATGTGTGATCTGGGTTTCAGTGGCATCTACTGTCATGAAAATATTAACGACTGCATCAACAACCCCTGTGGAAACGGAGGGACCTGCATTGACGGAGTGAACTCCTTTCAGTGCTTCTGCCCTGATGGCTGGGAGGGTCGACTCTGTGACCTCAaTGTCAATGAGTGCACACACAACCCGTGTAAGAATGGCGGACGCTGCGTCGACCTGGTGAACGACTTCTACTGCGAGTGCGCCAACAACTGGAAGGGCAAGACCTGCCATTCACGCGAGAGCCAGTGTGACGCAACCACCTGCAGTAACGGAGGCACTTGCTACGACCACGTGGATGCCTTCCGCTGTGCCTGTCCACCTGGTTGGGGAGGGAACACATGCAACACAGCCAAGAACAGCACATGTGCCTCCAGTCCTTGTTCCAACGGTGGAACCTGTGTGGGAGGAGGAGACGCCTTCACCTGTATCTGCAAAGAGGGCTGGGAGGGCCCCACCTGTGGCAAAAATATAAATGACTGCAACCCTCATCCATGTTACAATGGCGGGATCTGTGTCGATGGAGTCAACTGGTTTCGCTGCGAGTGCGCTCCTGGTTTCGCCGGACCAGACTGCCGAATCAACATAAACGAATGCCAGTCTTCACCATGTGCCTATGGCGCCACCTGTGTGGATGAGATCAATGGTTTCCGCTGCATCTGTCCGCTTGGTAGATCAGGAGCCCGATGCCAAGAGTtTATAGGTATTGGAAAGATTTGCCACTATGCTGGGCTGCAGTTTCCCCATGGCAGCCGCTGGGAGGAAGAGTGCAACAGCTGCCATTGCATCAATGGCAAAGTGGACTGTACAAAGGTGCTGTGTGGTCGTCGTCCCTGCCATCTCCAGTCTTCAGGCCATAACCAGAGACAGCAGTCCTGCCCGGCTGGACGAGAGTGTCTGGAGCACAGTTACCTCACCTGCTTCAACCCCCCTTGCCATCAGTGGGGGGTTTGTTCCATGGCTAGACCCTCACCTCCACAAGCAACCACCAAATGCCAGCCAAACACTGGGCATTTGGACAACAGCTGTGGCCGCATAACACTCGTTTTCAACAGAGACAAAGTACCATCTggAACAACAGTGGAGAACATCTGCTATGAGCTGAGGTATCTTCCTGACACCCGAAGCTTGGCAAAAGAACATGCCCTTCTCCTGCTGTGTGACCTCTCTCATTCGAATCAGGATGCTGTAGAGGTGGCTATATCTTTCCAGCCAGAGGATCTACCAGACCACAGTCTAATCCAGGAGGCAGCCAGCGCCATAGTGGGCAGCTTGTCCAAGCCGCACAACAGCACCATAATGCTGGCAGTCATTGAGGTCAAAGTGGAAACACAGGTCATGCCCCACTCAGTGGATTACCTGGTGCCTCTACTTTGTGTGGTCTTCTGCTTGCTCTGCCTCTTCTGCATCATCGTATGTGTTTGGTggacacgcaaacggagaaaaGAGCGTGAGAGAAACTCAGCCGACGACGAAAACGTGAACAACCAGTGGCAGCCACTTCGGCCAGTCGTGGGacgtcagcagcagcagcagcagcagctgaaagAAAGCAACAGGGACGCCGAGCAGGAGCGCAAAAAGCTCATGGGCCCATCCTATCGGACGTGTgatgaaggggaggaggaggaggaggaggaggagacggaAGGAGAGCTTGAGCTCGAAGAGGAGTGTGGTGGAGCAGGGGCGGGAAAGCAGCCAGTATATACGTACTCTAAAACTGCAATGCAGTCCAGTGGGGGAGTGATCTGTACCATGCACAGCTCCAGTTCACCCCTCAAAGCACCCCACCGGACCCCAGGCTACAGCCCAAAAGACAACCGCTGGAAAAATGTCAGTGCTGTCTTGACTGGTCAAAAAGACCTCAGAGACCATTGTGTATAGGAAATTTAAACAAAGTACTCGCAATGTGGAAGTGATAGAAGCTGCAAGGCAGTTGACTATTCTTATTTTTGGACtacttttgaaaagaaaaaaaggctttGTGTTTTAATAAGCTGttctttgttttcatgtttttgtcactgtcacctgaaataatttttttattacggAGGCTAAAGTACAGTGAACATCCTTTTTTGCTTCTGTTcacttatttttctttaattatgtACAGAAGGAgctgaaatgtaacaatttttcAGGGGGCAAAAGAAGCTCTTTGCAATTTTTGTTTATGGAATtgtaccatttaaaaaaaacaatgaatcatcgagaggagaaaaaacaaaaacctgtaTAAAGATTTACTTGTTTACAGATGATTATGATTTTGTTAAATTGTCAGCGGGCTCCTGTTCAGTgtctgtgggggggggggcagataCATATTAAAGGGACAGTAAAGGAAGGGTTTCGAGGGAAATGGCCTGTTGCAGCCACAGTTGCTCTGTCTCTTTCCGGTTTTGCCCACCGATCCACCTGTGGCCGTCATGCGCCAGCCTTACCAAAACACTTGGCCTGGAGGGGAGAGGGGACAGAAACCCCAGTGCCTACTATGTGGCcttccatttttttctcctgtctCAGTTGTCTTGGCTGAAAGCTCTGTTTGAGGATTTTTTGCAGTATTTGAGTTGGTAGCAAGTGCCTTTCTAAGAGCCGTGTCGAGGCTCCAAGTCGCGCTGCCCAGTTTGACCTCCGTGTTCTCAAATCTCAAAGGGATATAAGTGTACATCTAGAGAGTTCAATTTCACAGCAACACCATTCAAGGTATTTGATCAAAACAGAAATGAAtactctgtatatatgtgtaaataCTAAAGGAGTCGCTGTGTATATTTGAGATAAGTAACTTAAAGACAAgtcacacatttttattattattgttattatgattaattttattttttttattttttacgcCATTCCTTTTATTTATGCCAGTCGAAATGGGCACGTTTTATGACACTTCATATCCACAGTCCCACAGTTAAGAACTTTTACAATGAGGTACCATCTATGAAGGAATTTCTGAAGGGTTTATAAATTGTTAGTCATGAGGacgcatttctttttttgtgactAACTGTCACATCAACGGTTGTGGCTATGTCTTTACAGCAAATCAGTGATGCCTTTCAACTTTAACATTATACCGTTACCATAAAATAACTGGCCAAAAGATAGAAAGCTACTTTCATTTacaattttaataataaaacactattttttttCTGGCTATATGTGGTACAACATTTACTAGATTTGGTCTCAATCTTCAGCTACCTTTGCACTGTAATTCTTCTACCAGCATGGCAATATTAATATTAGTCTAAGTCAACAGTTGTTTGACGGAAAGAATTATGGATAGTTTTTGGATGAAAATAAATCCAAATTCTATAGGACTTAATTTTCTCTATTGAAGAAAACCTGTATTAGTATTAGCTAGATGTATAAATGATTAATCCGTGTTCTTTCATGATTGCATCACAAAACAGATTTTTAATATGGTCATAAACAGGAAGTCAAAAACGTATCAAATGGGGCAGGAAAGTTCTGTCACACTGCTATTTAGAGACTGACAGTTGCCGTTATGGCCACTCCTCAATCCTTGATGTCACAGTAGGTGTTTTTCTTGATGACGAATGGCGAACGCATATTGTGACATCACAAATATGAGCGTGGCCAAATTTGCACCAACAAATCTCCTGCCAATTGGAATTATTTGATCCAGTTGTTTGCTCTTTAGACTCTAGTCAGTTTTTAATTACTCTCTATTAGAGGTATCACTGATTTGTTGTTTATTCAGGATTTGGTTAACAAGAAAATTCACCAGTAGCTTTTGGCAGGCAGTGTTGCAAAGCTGCCAACATTATAGCCTTAAAAAGTTCTCAAACCATTTCTAAACCCATCACAAACCCTTTTCTTTCAGGTGCCTTAATGTAATGAGTAATGCATTCTATTTGTATCATTGGTCATCTTTTTatgttgttggtttgttttcacTGTTAAGGAAAGTAACTCTTTAAAACATTGTGTGTTGTATAGTGGCGTGTTTTATTCGCCTGAGTAAAGTGCTCTCCTTGTCTCGCTCTGCTGTCATGGAGATTTCTGGAATAAAACACTTAATGgaggatttgaaaaaaaaaagtccaccaCGACTCTTGAGTGTCATGAATGTGGATGTCAGTCGGTCAAATGTGGACATGCATTAGCTTCATGTTTGGTTTAAAGGCTTTAATGAAGGGAACAATATTTGCAGTTGCAGATGTTTTGCTACCatgcaggtgttttttttttttagttaccAACTCAGTTCAAAATGACCCCTTTTTCATATCATGTCATTGTCTCAAAACGGCattgtattttctgtaaatgGGACACAGCAAAATATAGAAATTAAAGATCCATCACTGCTGGTGTTAAAAGCTGAATATGCAtattgtatacattttattctacGAGTGAAATTAGtttattttatacaaagttTTCCATTCTTTTAGTGGATGTTTCATTGTTCGAAGTCATCATCATTATCCCAGTTATTTATTAAAGCAGTTTTGTTCAA

Function

GO:

id name namespace
GO:0021522 spinal cord motor neuron differentiation biological_process
GO:0007219 Notch signaling pathway biological_process
GO:0048793 pronephros development biological_process
GO:0031016 pancreas development biological_process
GO:0001889 liver development biological_process
GO:0021514 ventral spinal cord interneuron differentiation biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005112 Notch binding molecular_function
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU253943 lncRNA upstream 19550 26006921 ~ 26027922 (+) False nudt14
TU253938 lncRNA upstream 78547 25968206 ~ 25968925 (+) False LOC120546493
TU253941 lncRNA upstream 80172 25967006 ~ 25967300 (+) True G187431
TU253934 lncRNA upstream 112213 25929576 ~ 25935259 (+) False abracl
TU253932 lncRNA upstream 113525 25930048 ~ 25933947 (+) False abracl
XR_005637043.1 lncRNA downstream 145380 26247778 ~ 26249685 (+) True LOC120547280
TU254021 lncRNA downstream 155097 26257495 ~ 26260894 (+) False atp5mj
TU254024 lncRNA downstream 169970 26272368 ~ 26272595 (+) True G187508
TU254063 lncRNA downstream 212724 26315122 ~ 26315654 (+) True G187535
TU254064 lncRNA downstream 222118 26324516 ~ 26324734 (+) True G187536
XM_039782326.1 mRNA upstream 11240 26006854 ~ 26036232 (+) True nudt14
XM_039781433.1 mRNA upstream 54599 25970398 ~ 25992873 (+) False knl1
XM_039781432.1 mRNA upstream 54599 25970569 ~ 25992873 (+) True knl1
XM_039781434.1 mRNA upstream 78547 25955250 ~ 25968925 (+) True LOC120546493
XM_039781435.1 mRNA upstream 98062 25937301 ~ 25949410 (+) True heca
XM_039782810.1 mRNA downstream 37011 26139409 ~ 26159436 (+) True esr2a
XM_039780906.1 mRNA downstream 155077 26257475 ~ 26260895 (+) True atp5mj
XM_039782726.1 mRNA downstream 162791 26265189 ~ 26283008 (+) True gareml
XM_039782617.1 mRNA downstream 195928 26298326 ~ 26310715 (+) True hadhb
XM_039781022.1 mRNA downstream 311293 26413691 ~ 26431397 (+) True tfap2d
TU253978 other upstream 17072 26028060 ~ 26030400 (+) False nudt14
unassigned_transcript_1083 other upstream 827532 25219868 ~ 25219940 (+) True trnat-ugu_3
TU253601 other upstream 1038065 25004019 ~ 25009407 (+) False lama2
TU253479 other upstream 1539659 24506913 ~ 24507813 (+) True G187094
TU253325 other upstream 1964368 24079603 ~ 24083104 (+) True G186975
TU254022 other downstream 174297 26276695 ~ 26281368 (+) False gareml
TU254081 other downstream 343252 26445650 ~ 26452304 (+) False tfap2b
TU254083 other downstream 343252 26445650 ~ 26452304 (+) False tfap2b
XR_005637060.1 other downstream 554943 26657341 ~ 26657503 (+) True LOC120547357
TU254123 other downstream 580497 26682895 ~ 26685507 (+) True G187574

Expression Profile