RNA id: XR_005636955.1


Basic Information

Item Value
RNA id XR_005636955.1
length 2152
RNA type transcript
GC content 0.46
exon number 7
gene id nfkbie
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 23578378 ~ 23589689 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtgtgtgtgtttgctcacGCGCACTGGGGATTCCCCCGCGTGACAAAAACAGCTTCGTCTTTCACATGTCAGCTTATCGCCTTTCATTGCTCATATGCTCTCCGCCTGGAGCCCATACTGTTACCGGATATCTAGACAACGGGCGGCCGTTTCGCCTTTTTTCGCTTGTTTCGAACCCTGTTCACGTTTGGAATGAACGTACAACAGtttgaaactttaaaaaaaacaataattgatCAAAAGTGGAGGCCTGTTGCTGTAAGGCAATGCATTATCGGTTAGGGGCATGAAACGAAGCGGCTCGTTCCTCAGGTTTCACAAAGGTGCGGAGGTTTTCTTAGGTGTCAGTAGCCTCGGAGTCCGGTCACATCACCGAGCGGCGACAACACCCGCTAGTAGCCTTTAAATCCtcgaggaaggaggaaggagggagggggaaacCCAGCGAGGCCACCACCATCATGGCGAGCGACGACTGTAGGAAAGATGACTTGCTGGAGGATAACCGCACAGATTCGGGCATTGACTCGTATCGTTTAATACTGAAGTCGGAGGAGCCCCGGGAGCCGAGCGCCGACTTCAGCGGGCCAAGGGACAAGATTTCTACTGGGGAGGAGCGCCTGGACTCAGCCTATGGCTCCTCGTCTATCACGGTGGAGAGTTTGTCAGAGATAGTTGGGGGCTGCACGCTTTCCAGCGCTCAAAAGGAGCAAGCACAGAGCTCTGAACTCTCTGAGCAGGAGAACTTGCTCACGACCATAACTGAAGATGGAGACAcAATCCTGCACTTAGCAATCATCCATGAAGACGAATTTATCGCCCAACAGTTGATACAGCTATTCCCAAAAGAAGTCCTGGACATCCAAAACAATTTATACCAGAGCCCTTTGCACTTGGCTACCTACCTGAACCTGACCGATGTGGTGAAGGGCCTGATGGAGAAAGGTTCCAGTCTGGGGCTGCAGGACCAGGAGGGGAACACTGCGCTCCATGTGGCCTGCCAGCATGGGCAGATAGAGTGTGCCACTGAGATGACCAGAGAGGTTTCCCCAAGCAAGCTGGCACCTGTCCTCGAGACCCAGAACTGGAGAGGTCTTGCCTGTCTTCACTTGGCTGCACTGAACAGGCAATATCAGATTATGAAGCTCCTGGTGAAAAAGAAAGCAGACCTAAATATACAGGAAGGAACCAGTGGGAAAACAGCTCTTCATCTCGCCGTTGAGCTGCATGATGTCACATCAGTAAAGCTGCTGCTCAGCAAGGGAGCCAATGTGGATGCTGCCATGTTTAACGGCTGCACACCTCTGCATCTTGCAGTTGGGAGACAGGACGCCGCCATCGCCAACCTCCTCTGCCAGTCTGGCGCTGACACAATGCTACGAAACATGGAGGACGAAACGGCGCTGGATCTGGCCGACGGCAATGATGATATTCTGGCTCTATTTCCTTTTGATGATATCCAGATCTCCGGGAGGTCGGTGGTCAGTGTGAAGTTTTAAGCTGAATCTTAACAGATAACCTTGGAATTGTCTGAAGCTTCACTGTGGCTGGAACCTTTtgattggaaaaaaaagttttcagtAAAATAGTTTCTCTATTTGTAATACATTCTGATTTGATCTGTATTTAACCATTATTTAGACAAATATGTGCACCATATCTTTCTTCCCTCTGACAAAAAGTGATTTTGCTTAATCAAACACTGAAAAAGATCTGTTTGTGAGTCATTGGTTAAATTATTCTGCTTCTTTTCACATGCCTATGGAGGGGTTGCAACAAAAGCCACCTCAATCCACAGAAAGACTTTTGAAGGAATGCAATCAGAGGCAGAACTAaaatttattaaatgtaaaacTGTTTGTCACAAATAGACCTGCAATTCTACAAAGACAAACTAATCACATCCCTGCTATTTGTTACAAAACATGTAgcccaaataaaatgtaatatttaagaaaaaaaaatgcagcttcatctttttgtttttttaggtttGCTTTCATGCTGTGAAGCAGTTTTCTCTATTTATCTCATCTTATCCTTAATCTGCAGTAAACTGTTCCTGTACGTTGGTGTGTAATTGCACTGCCCTGTCTAGTTAATATAAGCagtgtgtttattttgtaataaaatgaagaagaaaaaaaactca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU253175 lncRNA upstream 14083 23562276 ~ 23564295 (+) False tcte1
XR_005636851.1 lncRNA upstream 71814 23475699 ~ 23506564 (+) True LOC120546283
TU253107 lncRNA upstream 138858 23438240 ~ 23439520 (+) True G186841
TU253109 lncRNA upstream 143027 23435136 ~ 23435351 (+) True G186843
TU253108 lncRNA upstream 145995 23420899 ~ 23432383 (+) True G186842
TU253166 lncRNA downstream 14122 23602636 ~ 23607535 (+) True G186882
TU253189 lncRNA downstream 59065 23647579 ~ 23649568 (+) True G186901
TU253190 lncRNA downstream 61882 23650396 ~ 23658430 (+) True G186902
TU253196 lncRNA downstream 78423 23666937 ~ 23668127 (+) True G186905
TU253301 lncRNA downstream 241011 23829525 ~ 23861934 (+) True G186954
XM_039782884.1 mRNA upstream 13949 23559498 ~ 23564429 (+) False tcte1
XM_039782883.1 mRNA upstream 13949 23559780 ~ 23564429 (+) True tcte1
XM_039782738.1 mRNA upstream 24112 23548578 ~ 23554266 (+) True rnf8
XM_039782739.1 mRNA upstream 24196 23548578 ~ 23554182 (+) False rnf8
XM_039781129.1 mRNA upstream 38534 23522891 ~ 23539844 (+) False mia3
XM_039781485.1 mRNA downstream 1454 23589968 ~ 23597399 (+) True slc35b2
XM_039781487.1 mRNA downstream 22495 23611009 ~ 23624138 (+) True rbm25b
XM_039781488.1 mRNA downstream 22495 23611009 ~ 23624138 (+) False rbm25b
XM_039781493.1 mRNA downstream 52361 23640875 ~ 23644644 (+) True atp6v1d
XM_039781674.1 mRNA downstream 441539 24030053 ~ 24068592 (+) True tmem121ab
TU252499 other upstream 1512789 21985779 ~ 22065589 (+) True G186394
TU252459 other upstream 1631378 21944743 ~ 21947000 (+) True erh
TU251678 other upstream 3718173 19856735 ~ 19860205 (+) False kif25
TU251521 other upstream 3930222 19634283 ~ 19648156 (+) False acp1
XR_005636890.1 other upstream 4039170 19429596 ~ 19539208 (+) False nhsl1b
TU253325 other downstream 491089 24079603 ~ 24083104 (+) True G186975
TU253479 other downstream 918399 24506913 ~ 24507813 (+) True G187094
TU253601 other downstream 1415505 25004019 ~ 25009407 (+) False lama2
unassigned_transcript_1083 other downstream 1631354 25219868 ~ 25219940 (+) True trnat-ugu_3
TU253978 other downstream 2439546 26028060 ~ 26030400 (+) False nudt14

Expression Profile