RNA id: XM_039782107.1


Basic Information

Item Value
RNA id XM_039782107.1
length 1494
RNA type mRNA
GC content 0.44
exon number 11
gene id LOC120546869
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 30028950 ~ 30083063 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTTGTCTCCTCTGTGCAGGCTGATCCTGAAGATGGTGTTTCCTACGCCTCCATCAGCTACACCAAGAAGACCAACAGGAGAGCCCAGGCTCGGGGtggagatgatgatgaagatgatgcaGTGACCTACAGCACCGTGAAAGctccctcttcctctgctgctgctgcagcctctgctgATCTCAGCAACCTCTACGCCACCGTCAACAACCCCCAAAAATAAGACAGCACAAAGCAACTAGTTCAGAGACTTGAactgaagaagaacaagaagaagcagagagagacagagagacacgaTGGCTGAATTCAGATGGACTAAAACCTCTTTATTTCTGATACTGGTGCTTCAGTTTACAGTACCAGCAACAGGACCATTTATCAGCTCCTCCATTGTCAGAGTTGGAGATGAAGTCACTTTGTCTTGTCAAATAGACAGTCCGGTTTGTGACAGTACTCACTGGATCTTCACTGATTCAAGACGCACAGCAGCAGTAGATCTGGTTCTTGATGGGAGGATTGTTGAAAAAGCCAAAGTTAAATCAGACAGACTGAGTGTTACAGCGAACTGTTCTCTGGTTATAAAGAAGGTCACAGAGGAGGATGCTGGTCATTATAGATGCTCACAGTTTAGATCACGACAACAAGCTCTAGAGACTGTTGTTATTCTGTCTGTTGTTACCATGACTGAACATCAGGACAGTGATGAGGTGACGTTAAACTGCTCTGTGTCGACATATGAACGATGTAAACACAAAGTGAAGTGGCTGTTTCAGGGTCAAGATGTGGATAAATTAAAAAACCAACAGATGAAGACATCACAGTCTCCCTGCAACGCCTCTGTGACCTTTCCTACTTCTCATTTTATTTACACATCAAGGTTTCAGCTCTTTAGGTGTGAAGTGACTGAAGGAGACAAAGTGAAGGAGTTTCCCTTCAGCCCTCAGTCCTCAGGTGAGAAACCAGAATCATTAACAACTGAAAGCAGCATTAAAGATATGTTGGTGTACATCATCGTGGCTCTGGTTTTAGTAGCACTCTTAATAATCATTGTGGCTGTCATCAGTTGGAAGAAAACGAAAGGAAACAAAACACGGAGGAACGACAATGTTGGGCTGACCTCAAACTCTGCAACAACTCAGTTTGGTCCAGAAACCAGTCAGGACACGGCTGATCCTGAAGGTGGTGTTTCCTACGCCTCCATCAGCTACACCAAGAAGACCAACGGGAGAGCCCAGGTTCGGAgtaaaaatgatgatgatgcagtGACCTACACAACCGTGAAAGCTTCCTCCGCTGATCCCAGTGACCTCTACGCTACCATCAACTAATCTGTCTAATCTGTCATCAGATATTTGCTAATCTCTGTTAATGTTCATGATCATGTTCAGCATGGATTATTGTAAACAACTTCCTATTCAGAAGGTTGTGTAGTAGGTTAACTAGTGTTGCAATGTAGAAAGGGGAAGTAGTAGTTCAACATGTATATATGTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU255014 lncRNA upstream 707 30071009 ~ 30072741 (+) True G188294
XR_005636970.1 lncRNA upstream 17024 30054358 ~ 30056424 (+) True LOC120546872
XR_005636971.1 lncRNA upstream 17024 30054358 ~ 30056424 (+) False LOC120546872
XR_005636973.1 lncRNA upstream 38247 30030900 ~ 30035201 (+) True LOC120546873
TU255086 lncRNA downstream 13659 30096722 ~ 30097235 (+) False btbd9
TU255087 lncRNA downstream 14663 30097726 ~ 30098348 (+) True G188344
TU255088 lncRNA downstream 16037 30099100 ~ 30099414 (+) True G188345
TU255092 lncRNA downstream 33647 30116710 ~ 30118259 (+) True G188347
TU255093 lncRNA downstream 34471 30117534 ~ 30118982 (+) False G188347
XM_039781362.1 mRNA upstream 50806 30012155 ~ 30022642 (+) True LOC120546436
XM_039782109.1 mRNA upstream 166754 29895425 ~ 29906694 (+) False LOC120546870
XM_039782115.1 mRNA downstream 1485 30084548 ~ 30097239 (+) True btbd9
XM_039782116.1 mRNA downstream 16896 30099959 ~ 30115805 (+) True zfand3
XM_039782117.1 mRNA downstream 16896 30099959 ~ 30115805 (+) False zfand3
XM_039782120.1 mRNA downstream 16899 30099962 ~ 30115805 (+) False zfand3
XM_039782119.1 mRNA downstream 22391 30105454 ~ 30115805 (+) False zfand3
TU255018 other upstream 427625 29645254 ~ 29645823 (+) True G188296
TU254981 other upstream 609574 29461849 ~ 29463874 (+) True G188268
TU254910 other upstream 652721 29419376 ~ 29420727 (+) True G188207
TU254892 other upstream 761084 29292741 ~ 29312364 (+) False si:ch211-245h14.1
unassigned_transcript_1091 other downstream 290603 30373666 ~ 30373738 (+) True trnat-ugu_4
TU255132 other downstream 541417 30624480 ~ 30659281 (+) False G188352
XR_005636985.1 other downstream 711156 30794219 ~ 30812143 (+) False LOC120546905
TU255105 other downstream 770912 30853975 ~ 30855364 (+) False G188352
XR_005637052.1 other downstream 1414892 31497955 ~ 31498174 (+) True LOC120547349

Expression Profile