RNA id: XM_039782117.1


Basic Information

Item Value
RNA id XM_039782117.1
length 1324
RNA type mRNA
GC content 0.55
exon number 7
gene id zfand3
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 30099959 ~ 30115805 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGTATCAGCGACGTGTGAATAGGGGTGGTCATTAACAGTGAAGAGGGGAAGGCCTTCCTCAAtctatttgttttttctttcctcgCACTCTCACTCGTACTTAACATCGCCATTATCGTATTTAACCTGTGTCGGCGGACAGCTGGCTGTTTTTCTAAGCTTTTTAGGGTCGAGTGAGACACCGGGACGCCCCCCTCTTTTCGTTCGTCGGTCGTAACGTCCGAACGTCCAGCTGATTGCTTCGAGTGCCGTTCAATTATTCCAGTTTAAACTGAGCCGTTTTGTTTGACTTAACTGATGTTTTTTTGAGGCCGAAAAGGGCCGAGTTCGCCACCTTTTTCTCGCCGACTCGTGGACTTTAAAAGAAAGAGGACGTTTATCTTTTTGTCTAACTTGAGCGTGGATCGTTTTTCTTATTAAACGACCAGGCCCCGGACTCATCCCCAACCTCGCGTTTCCTtatcgttttttttgtgtgttggaaGTCATGGGAGACACCAGTGAACGAAGCAAACCTCCGAGTCTACCTCCCCGATGTCCCTGTGGATTTTGGGGGCTGGCTTACTATGCAGCCATGACTGAAACAGGTGACTGCCAGAGGCCTTTGCAGGACCTAACTCTGTCCAGTGAAACCATGAATCTCTGCTCCAAATGTTTTGCCGACATCCAGAAGAAGCAGCCAGGCGAGGACTGCACCTCTAAGCCTATCCAAAGCACTGGGAGTAGCCAATCGCCAGTTTTCAGTAGTGAGACGAGCAGTAGCAGTAGCCAATCCCTATTGTCGTCGCCGGCCTCTAGCTCCGAGCAGCCGTCAGCCGAAGAGCCCTCGCCCACGTTTCCCAGCACGAGGGAAGGCACGTCGTCCACAGAAACAGCCCAAGGCACACTCTGCACACCCACAAAACGTCCACGAGAATCAGCGTCGGGCTCGGAGAGCGAGGCGACGCCGGAGAAGCGGCCACGGACAGACGAGAAGGAGGGGGGCGGCGAGGAGGCCCGCGGGACGCCCAAGCAGAAGAACCGTCGGCGCTGCTTTCGCTGCCAAACCAAACTAGAGCTGGTGCAGCAGGAACTGGGCTCCTGCCGCTGTGgctaTGTGTTCTGCATGCTTCACCGTCTCCCCGAGCAGCACGACTGTCTGTTCGACCATCTGGGCCGCGGGCGCGAGGAGGCCGTCCTCAAGATGGTGAAGCTGGACCGCAAGGTGGGCCGCTCGTGCCAACGCATCGGGGAGGAGTGCTCCTGATTGGCCGCGCACCGTGACCGGCCAGCCAGTTGAAGATGAGGCGcttaggaggaggaggagatggtggAGAAAGGAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU255088 lncRNA upstream 545 30099100 ~ 30099414 (+) True G188345
TU255087 lncRNA upstream 1611 30097726 ~ 30098348 (+) True G188344
TU255086 lncRNA upstream 2724 30096722 ~ 30097235 (+) False btbd9
TU255014 lncRNA upstream 27218 30071009 ~ 30072741 (+) True G188294
XR_005636971.1 lncRNA upstream 43535 30054358 ~ 30056424 (+) False LOC120546872
TU255092 lncRNA downstream 905 30116710 ~ 30118259 (+) True G188347
TU255093 lncRNA downstream 1729 30117534 ~ 30118982 (+) False G188347
TU255094 lncRNA downstream 2806 30118611 ~ 30119041 (+) False G188347
TU255097 lncRNA downstream 210123 30325928 ~ 30326911 (+) False angel2
TU255096 lncRNA downstream 218823 30334628 ~ 30336202 (+) False angel2
XM_039782115.1 mRNA upstream 2720 30084548 ~ 30097239 (+) True btbd9
XM_039782104.1 mRNA upstream 16896 30073448 ~ 30083063 (+) False LOC120546869
XM_039782122.1 mRNA downstream 9658 30125463 ~ 30323344 (+) True galnt14
XM_039782123.1 mRNA downstream 9658 30125463 ~ 30323344 (+) False galnt14
XM_039782121.1 mRNA downstream 10462 30126267 ~ 30323344 (+) False galnt14
XM_039782129.1 mRNA downstream 209167 30324972 ~ 30334742 (+) False angel2
XM_039782127.1 mRNA downstream 210081 30325886 ~ 30334742 (+) True angel2
TU255018 other upstream 454136 29645254 ~ 29645823 (+) True G188296
TU254981 other upstream 636085 29461849 ~ 29463874 (+) True G188268
TU254910 other upstream 679232 29419376 ~ 29420727 (+) True G188207
TU254892 other upstream 787595 29292741 ~ 29312364 (+) False si:ch211-245h14.1
unassigned_transcript_1091 other downstream 257861 30373666 ~ 30373738 (+) True trnat-ugu_4
TU255132 other downstream 508675 30624480 ~ 30659281 (+) False G188352
XR_005636985.1 other downstream 678414 30794219 ~ 30812143 (+) False LOC120546905
TU255105 other downstream 738170 30853975 ~ 30855364 (+) False G188352
XR_005637052.1 other downstream 1382150 31497955 ~ 31498174 (+) True LOC120547349

Expression Profile