RNA id: XM_039782153.1


Basic Information

Item Value
RNA id XM_039782153.1
length 2114
RNA type mRNA
GC content 0.46
exon number 8
gene id LOC120546900
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 30863390 ~ 30872873 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAACACCAATCACAGTACGGTAGGTAGTGGGAAGATTGCTGCAGTTTAGGGTTAGTTGTGAAATCCCTGTTAACCAGAACACTCACAAAACTAAAGGCTCCAGGAGGAAACATATTTAGTCAGTGAAGTATCAACTTCAGgacacttttttaaagtaatggGGATTTTAGATCTCTTTCTCCAGTCCTCCAGCTCCATCTCCCTGTTGGGGGGTCTTGGGGTCCTGCTCCTCGTCTACCTTGTCTCCTCCCCCACCTTCAGCTTAAAGGAAGACAGAAAAGGACCTCCAGGACCCAAACCATTTCCCCTAATTGGGAACCTGCTGCAGCTTGATCTCAAGAGACCCTACAACACATTACTGAAGCTTTCCAAGACATATGGATCAGTGTTCACTGTGTATTTGGGACCCCAAAAAGTGGTGGTCCTGGCTGGGTACAAGACGGTGAAAGAGGCACTTCTCAGCTATGCTGAAGAGTTTGGTGAAAGAGATCCAATGTTAATAATGCAGGAATATAGCCAAGGCCATGGGGTTTTATGGGCCAATGGTGATTCGTGGAAAGAGATGAGGCGCTTTGCTTTGACTAACCTGAGAGACTTTGGGATGGGCAAGAAGGCGAGTGAGGACAAACTCATTGAGGAATGTGAACACCTCATTGAAGTGTTTAAGACATTTAAAGGTGAAGCTTTTGATACGACCCAACCAATGAACTATGCAGTCTCTAATGTTATCTGCTCCATTGTTTATGGCAGCAGATTTGAATATGATGATCCAGAGTTTACATCCCTGGTAGATCGAACCAACAGAAACATACAACTTGTGGGCTCCCCGTCAGTACAGGAATCTGGGATTGCCAACAGTTACTTCCACGAACACAACCTTTTGCAGACAGTTTTTCATCTTTTCGGGGCAGGCACtgacacaacagcagctacattgAGATGGGCACTTCTGTATATGGCCAAGAATCCAAAAATACAAGACCAGGTCCAGGAGGAGCTGAGCAGGGAGATAGGAAGTCGTAACGTTCAGGTTGAGGACAGGAAGAACCTGCCCTTCACCGACGCTGTCATCCATGAGACACAGAGACTGGCCAGCATCCTCCCGATAGCAGTGCCTCACAAAACGAGCCAAGACATCACCTTCCAGGGTCACTTCATTAAGAAGGGTACAACGGTATTTCCTCTGTTGACATCTGTCCTGTATGATGAGAGTGAGTGGGAGAGGCCACACAGCTTTTATCCTGCTCACTTCCTGGACAAAGATGGGAAGTTTGTCAAGCGAGAAGCCTTCATTCCTTTTTCTGCAGgtcGCAGGATTTGTCTCGGAGAGAGTCTGGCCAGGACGGAGCTCTTCATCTTCTTCACCAGCCTCCTGCAGCACTTTTGTTTCACTCCTCCTCCTGGAGTTTCAGAGGATGAACTGGATCTGACTCCACGTGTGGGCTTCACCCTCAACCCTTCACCCCATAAACTGTGtgctgtttcctgtattgagcAGTAGGGCTTGAAAATGCAGCTTAGCCcgcttttatgacttttatgacacaAGAGTAGAGTAGATGCTTATGTGTACAGTGTTTTAATCAATGAAGTACAACAACAGCACTAAATATGTTCAATATCAATTATGCAATCAAGACAATTTTTACTTCATTATAATTATGCAGATAAGCAACTTAATGCAGATCAGTAATCTGATGACAAGCCAGATGGTATGTTACACtaaaaccatctgagaagcagtcagacatccatggcgcacaggaggcgtTATGCACGGATCTATCTGCtcaggaacaaacgctgtgccgggtgggcaaactcatgtgatgcgtaattgatcccgtggatgatttgtaggctattaagtgaacaaggtgtacctgatccaccaaacactgggccgtcttgactgtcttaattctgcaaatatttctgttactgtagtcctatttactatttcattatttcatccatgcgtggcgcagcGGATCCGTGCGCACTGTAACCTGCCGTGGAGActctggcctcactaacctctcctcctctgagtcggatATCCAGTTTCACTGAGCGTACTAACACTTcgaaaataaatggcattacatcagtga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU255109 lncRNA upstream 2329 30621262 ~ 30861061 (+) False G188352
TU255138 lncRNA downstream 9088 30881961 ~ 30882446 (+) False G188352
TU255262 lncRNA downstream 147708 31020581 ~ 31020954 (+) True G188421
XR_005636875.1 lncRNA downstream 210598 31083471 ~ 31086840 (+) True LOC120546487
TU255283 lncRNA downstream 214937 31087810 ~ 31093393 (+) True G188430
TU255291 lncRNA downstream 226969 31099842 ~ 31100187 (+) True G188438
XM_039782157.1 mRNA upstream 13113 30837731 ~ 30850277 (+) True LOC120546903
XM_039782156.1 mRNA upstream 13113 30845055 ~ 30850277 (+) True LOC120546902
XM_039782158.1 mRNA upstream 32754 30826759 ~ 30830636 (+) True LOC120546904
XM_039782154.1 mRNA upstream 42109 30814853 ~ 30821281 (+) True LOC120546901
XM_039782159.1 mRNA upstream 50938 30794219 ~ 30812452 (+) True LOC120546905
XM_039782277.1 mRNA downstream 132609 31005482 ~ 31013827 (+) True nsl1
XM_039782500.1 mRNA downstream 144064 31016937 ~ 31020412 (+) True batf3
XM_039781430.1 mRNA downstream 230872 31103745 ~ 31106524 (+) True adat2
XM_039781208.1 mRNA downstream 296194 31169067 ~ 31309396 (+) True hivep2a
XM_039781206.1 mRNA downstream 309978 31182851 ~ 31306795 (+) False hivep2a
TU255105 other upstream 8026 30853975 ~ 30855364 (+) False G188352
XR_005636985.1 other upstream 51247 30794219 ~ 30812143 (+) False LOC120546905
TU255132 other upstream 204109 30624480 ~ 30659281 (+) False G188352
unassigned_transcript_1091 other upstream 489652 30373666 ~ 30373738 (+) True trnat-ugu_4
TU255018 other upstream 1217567 29645254 ~ 29645823 (+) True G188296
XR_005637052.1 other downstream 625082 31497955 ~ 31498174 (+) True LOC120547349
XR_005637053.1 other downstream 626236 31499109 ~ 31499328 (+) True LOC120547350
XR_005637054.1 other downstream 627962 31500835 ~ 31501054 (+) True LOC120547351
XR_005637055.1 other downstream 631136 31504009 ~ 31504228 (+) True LOC120547352
TU255785 other downstream 733181 31606054 ~ 31610101 (+) False LOC120546816

Expression Profile