RNA id: XM_039782177.1


Basic Information

Item Value
RNA id XM_039782177.1
length 4295
RNA type mRNA
GC content 0.48
exon number 28
gene id mthfd1l
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 20891408 ~ 20928761 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TATGCCGATGTCTTCACATTTCCGACTGCCCCTGAAGAGTATACCTCCATCAGGACCCTGTGTTGACTCGCCCCCTCAACTTTCTTTTTGTTCCTCCTGGAGGTTGAATCCCTCGCTAACCACCGTAAGACCAACAAAGAGAAGAAAACCGTATACGCCACAATTACAAAACTAAAAGTAACGTGAAGTTACTTAGTTAGTAAGCCATGAAGTTGTCTATAATGCGTAGTGCTTGTGGCAGCCTTCGGATACATTCAGCCTGTCCAGGCAGCAGGGTCAGCGGCTTGACACGGAGATGCCTACCGGTTGGTCCTGCCAACAACCGTTTGATCCTCCGGACAGCAAGCGCTAGCAGCGGCGGTACCAGCAACAAATTAGCCGTCAGCTTTGGAAAACAGTCTCAAAATGGTGATGGGTTTGACTGCGACAGTTCTTTGAGGGAAGTGGTTCAAAGCACCAAGGAGGCAATGTTGGCACTGCAGGGAAGAAATCCAGTAGTCCAACCATTGTTAGTCATTATACAGgcaggTGAAGATGACCAATTGTTGGAGATCAATAAGAAAATGGCAGGAAGGATTGGCTTAAACATCACCCAGATTTGTCTGGCAAAGGAATGCAGTGAAGATGAAaTTGTAGAGGAGGTGTTGAAGCTGAATGAAGACCCCAGGGTGCACGGAGTCTACCTCCACCTCCCCCCTGCCTACATCACCAGTCGAGTGTTGAACACAATCAAACCTGAGAAGGATGTAGACGGGATATCCGATTTGAATATGGGCCGTCTGGTACGAGGACACCTAAGCAAAGGCTTTGTGCCACCCATAGCCAGCGCTGTGCTGGATCTGCTGGAGAAACATGATTCTGCTTTGGAAGGGAAAACTGTGTTGCTTGTTGGAGGAGAAGGACCCCTTGGGGTGTCCCTGCAGTGCCTGATTGAAAGAAGTGGAATGGTAGCTCTCAAGGGTCAGTGGAGCTCAAAAAGCCTACGGAGACAGGCGATGCAGGCTGATGCTGTGGTCCTGTTAGGGGCAGGGAACATGGATCTTCCCCCCACCTGGGTTAGACCAGGGGCTGCTGTCATCCGCTGTGAGCCCACACTGGAGACAGATGAACATGCCGTTGAGATGTCCTCAAAGTCTGGGTTAGGATATCTCACAGCAGCTTACAGATCACAGAATGTGGTGGGTAGTTGCAGTCGGTGGCTCCAGGAGCAGCAGTACCGACCCTGGCATCTGCACAGCCTCAAACTGCAGCCCCTGACCCCTGTACCAAGTGACATAGAGATTTCCAGAGCTCAGACACCCAAGCCAGTGGACCAGCTGGCTGAGGAGATTGGTTTGCTGCCAGAGGAGCTTGAAGCCTATGGCAGGAGCAAAGCTAAGGTCCGACTCTCCTTGTTGGACCGCCTCCACAAACAGCCGGATGGGAAATATGTACTGGTTGCTGGTATAACTCCCACCCCACTGGGTGAAGGTAAAAGCACGGTGACCATCGGCCTAGTCCAGGCCCTGTCTGCCCACCTTAAGCTCAACTCCTTCGCCTGTCTCCGACAGCCTTCCCAGGGACCCACCTTTGGGGTTAAAGGGGGAGCTGCAGGAGGGGGATATGCCCAGGTCATCCCTATGGAGGAggtaaattttttccccacTGGTGACATTCATGCCATTACAGCAGCCAACAACCTGGTGGCAGCAGCCATCGATGCCAGAATGCTCCACGAGGCGACTCAATCAGACAAGGCCCTGTTCAATAGACTGGTCCCTTCAGTGAATGGAGTCCGAAGATTTTCACCCATCCAAATCTCCAGGCTACGTCGTTTAGGGATCAATAAAATAGATCCTGCATCTCTCACACCGCAGGAAGTCAGCACCTTTGTTCGTCTTGACCTGGACCCCTCCAAGATCACCTGGCAGAGAGTTGTTGACACAAATGACCGTTTCTTGAGGAAGATCACAGTAGGACAGGCGAGCACTGAAAAAGGACAGATCAGAGAGACTGGGTTCGACATTGCAGTGGCCAGCGAGATCATGGCCATCCTGGCCCTGGCAGACAGCCTGGTGGACATGAAAAACAGACTGGCGCGCATGGTGGTGGGGACCAGCCGCTCTGGACAGCCTGTCACCGCAGAGGACCTGGGTGTGAGTGGGGCACTGGCGGTGTTAATGAAAGATGCCATCAAGCCCACGTTGATGCAGACCCTAGAGGGTACGCCAGTGTTTGTCCATGCTGGGCCCTTTGCCAACATCGCCCATGGCAACTCCTCGGTGCTGGCTGACAAGCTGGCTTTAAAGTTGGTTGGACGTGACGGCTTTGTGGTGACAGAAGCTGGTTTTGGTGCAGACATCGGCATGGAGAAGTTCTTCAACATCAAATGTCGGGCTTCAGGGCTGAGGCCAAATGTGGTGGTGCTAGTTGGAACTGTCAGAGCGTTAAAGATGCACGGcggtggcccaaatgtgtCGGCAGGCGCACCTCTTCCCAAAGAGTACATTGATGAGAATCTGAGTCTTGTTGCAGGGGGTTGCCATAGCAATCTCAGGAAGCAGATCCAAATAGCACAGCTGTTCGGGGTACCAGTTGTGGTGGCACTCAATGTCTTCAAGACAGACACCCAGGCGGAGATTGACCTTGTGTGTCAGATAGCAAAAGAGTGTGGAGCATCTGATGCTGTGCCATGTCACCACTGGGCCCAGGGCGGCCGGGGTTCATTAGAGCTGGCCCAAGCTGTGAATGAGGCTGCCAGCAGACCCAGCCACTTCAAGTTCCTGTACAACATAGAGATGCCGATAGTGGAGAAGATCAGAACAATCGCCCAACAAGTGTATGGAGCTGATGACATTGAGCTGTCTCCAGAGGCCAAGGCCAAGATAGATTACTACAATCAACAGGGCTATGGTTCATTACCCATCTGCATGGCCAAGACTCACCTGTCCCTGTCCCACATGCCTGACAAGAAGGGTGTACCCACTGGATTCGTTTTGCCAATCCGAGATGTTCGTGCTAGCATTGGGGCTGGTTTCATCTTCCCACTTGTGGGAACGATGAGCACCATGCCTGGCCTGCCAACCCGACCCTGTTTCTATGACATTGACCTGGACCCGGTCACAGAGGAGATCACTGGGCTCTTCTGAGCATGCTTCAATAAATGCTATTCTCACAGGCTTCCTGTTCTGTTCTCAGGATCCTCAACTTCTCGTGTGCACCATCAGACGCATCCATCCCCTGCATCTTTGACAGGAAATTCTTTCTTACTTCCCAGGAGCCCAAACTCTCTCCACCTCACATTAACATgctctgggggaaaaaaaagattactGGAGAATTAGCTCAATGCTGTATTTGCACATCTGTGCGATATGCCAAAGATGACCTTCTACAGCCATATCGTCTATATCATATAAGCAGTATGTTTATGCTTTTGACCTCTCTGTATAATGTTTTCTGAGTATGTAAGAGTTAGTTTTAAAACCATCTTGAGTTTTATGTTGTTTACATCAacttttaatttccttttttgtgtgaaaaggTCAGTCACATGTCTTAAAACAGagctacattttttttatacatgtctTAAGCTTTTAAACTGAAATGGGCAGAGCTTGTGTATTTAACTGAATTGCTGTTGTACGCACAAAAAGCCATTATGGTGTTCATGTAAGCTCTAAATGTCCTAACCTGCTGGATGCTGCTGAATGTCCAAACTGCTGGAGTGAAAAGTTAGAATCATCAGTTTAAAGACACTTTTGAGATATTGTTCAAGTATTAACTATTATATGTTGAGAAAGCTCAAATTGAAATTGTTGTAGCAGAGGTGATGCATCCTGATACATTTTAACATGAgtttagtttgacttttttgtaTGTTGCACTTCAGAAGTATCacatctgtttgtttgttttttgaatcTTACTTTAATAGCCTTTAACAGCTCATTCCATGTATGGCATTTGCTGTGTGAAATAGCGCTTCTGCTATTTTCTCTGAaggtttcagaaacatttacaaTTACTTTATAATGTTGGTGAAGGTGGTCTGAATTTCTCTATagaactttattttacatttcatgCTCAGGTTGGGGTTTGCATTCACACAGCTGAAACTTACATTGTCAGCTGCTGGCCAACTTGTAATCTTGTTTTAATTAGCAATGTGATTAACATCCAGTGTTTTTGTTTCCTGACCACATCTCAAAGAAATGAAAATTGGTGTGGTTCTCATTTACAACAGTATGTTAAACATTTGGTTCTCAAACGTGAGTGCCTTTCAAATAAACCTTTTATTTACTCCAAAA

Function

GO:

id name namespace
GO:0009396 folic acid-containing compound biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0004329 formate-tetrahydrofolate ligase activity molecular_function

KEGG:

id description
K13402 MTHFD1L; monofunctional C1-tetrahydrofolate synthase, mitochondrial

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251924 lncRNA upstream 132602 20746317 ~ 20758806 (+) True G186035
TU251913 lncRNA upstream 188764 20693170 ~ 20702644 (+) True G186025
XR_005636997.1 lncRNA upstream 263143 20626548 ~ 20628265 (+) True LOC120546929
TU251786 lncRNA upstream 602653 20261809 ~ 20288755 (+) False LOC120546242
XR_005636839.1 lncRNA upstream 604544 20261785 ~ 20286864 (+) True LOC120546242
XR_005636824.1 lncRNA downstream 60544 20989305 ~ 20991418 (+) True LOC120546176
TU252007 lncRNA downstream 91060 21019821 ~ 21023878 (+) True G186088
TU252015 lncRNA downstream 103880 21032641 ~ 21033182 (+) True G186094
TU252027 lncRNA downstream 131996 21060757 ~ 21061976 (+) True G186106
TU252046 lncRNA downstream 222683 21151444 ~ 21153175 (+) True LOC120546175
XM_039782910.1 mRNA upstream 9821 20878480 ~ 20881587 (+) True LOC120547338
XM_039782183.1 mRNA upstream 252694 20628841 ~ 20638714 (+) True epm2a
XM_039782184.1 mRNA upstream 252694 20628842 ~ 20638714 (+) False epm2a
XM_039782185.1 mRNA upstream 252694 20629229 ~ 20638714 (+) False epm2a
XM_039782178.1 mRNA upstream 268777 20617250 ~ 20622631 (+) False LOC120546927
XM_039780932.1 mRNA downstream 8757 20937518 ~ 20980163 (+) True akap12b
XM_039780933.1 mRNA downstream 39582 20968343 ~ 20980163 (+) False akap12b
XM_039780944.1 mRNA downstream 63705 20992466 ~ 20996625 (+) True armt1
XM_039780941.1 mRNA downstream 70813 20999574 ~ 21012236 (+) True esr1
XM_039780945.1 mRNA downstream 231195 21159956 ~ 21162886 (+) True myct1a
TU251678 other upstream 1031203 19856735 ~ 19860205 (+) False kif25
TU251521 other upstream 1243252 19634283 ~ 19648156 (+) False acp1
XR_005636888.1 other upstream 1352100 19429595 ~ 19539308 (+) False nhsl1b
TU252459 other downstream 1015982 21944743 ~ 21947000 (+) True erh
TU252499 other downstream 1057018 21985779 ~ 22065589 (+) True G186394
XR_005636956.1 other downstream 2649617 23578378 ~ 23589689 (+) True nfkbie
XR_005636955.1 other downstream 2649617 23578378 ~ 23588514 (+) False nfkbie
TU253325 other downstream 3150842 24079603 ~ 24083104 (+) True G186975

Expression Profile