RNA id: XM_039782188.1


Basic Information

Item Value
RNA id XM_039782188.1
length 1644
RNA type mRNA
GC content 0.57
exon number 3
gene id nkx2.4b
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 31881465 ~ 31884802 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cgggagggagggagggagggggacgCAGGCAGGCAGACCCGACCACATCCAGCCAGAGCACGGGGTGTCCACTCCGCAACATGTCCTTCAGCCCAAAGCACTCCACCCCCTTCTCAGTCACCGACATTTTGAGCCCAATGGAGGACAGCTACCGGAGGTTTGGAGGCGTGGATCCCGCTGCGGGGAGCCTCGGCTCCCATCTGGGCTCCTACCGGCAGCAGCAAGTCTCCCATCAGCCCGccgcagcagcagccatgggaCCCGCCGGGCCCTACCACCATGTGCCCCACCACGGGGTCCCGCAGTTCTCCGGGGCCGTAGGAGGGTTCTGTAACGGCGGCATCGGCAACGTGGGTGAGCTGCCGTCCTACCAGGAGACGGTGAGGGGCGGAGGGGCGGCGGCAGCGTGGTACAGCAACCCCGAGCCCAGATACCCGACAATTTCCAGATTCATGGGCCCCCCCGGCGGGATGAACATGTCCGGGATGGTGGGCAGCTTGGCCGGGATGGACTCCGGCGCCAAGTCCATGGTGACGCTGCACGCGGCGCCGCGGAGGAAGCGCCGGGTGCTCTTCTCGCAGGCGCAGGTGTACGAGCTGGAGCGGCGCTTCAAGCAGCAGAAGTACCTGTCCGCCCCGGAGAGAGAGCACCTGGCCGGGCTGATCCACCTCACCCCGAACCAGGTCAAGATCTGGTTCCAGAACCACCGCTACAAGCTGAAGCGGCAGGCCAAGGACAAGGCCGGGCacgcacagcagcagcaggagggaaGCGGCGCTGGGGGAGGCGGAGGTCTGTGCTCAACGAGCCACCGCGCCTCCTCCGTATCCCCGGTTCTCTCCAAGAACGGTAAGGGCTGCCGGAACGACTCCAGCGGCTCCAACCAGACCGGAAACCGACAGAGCAGCGCGGGGGAGGCCATGACGGCGACCCCGCAGCAGGTGAACCAGCTGTCGTCCACGGAGGAGCTGGAGGATTTGTCCCCAAGTCCACCGATGGGACTGCACGGTCAGATTAACATGACGCAGGCGGACGCGGCGCTAATCGAGTACACAAACAGCATGATCGGCTCCAATTTACTGTACGGGAGAACTTGGTAGGAATACCGGGAGGACAGACGGGGGCGGGCCTGTGGGGAGGCATTCTCGGATGGAATTTTGAAAGAACCGGCTGGAGGACAAAAACGAGCACCAGAcgtttttccttcttctttccgTGCGTAAAGTTCTGGTTCCTTTACGCACACAGGGACTCAAAGAACACAAGAGTGGTTTTGAGCAACAAGGCGCAAAGATAAACTGTATATTAGAGCTTTGAGCCTGGTCTGAATGTTAATGTATTTTCTCACTcttcattaaaatgtttttttgtttttgtaacggacagatgtgtctgctgctgcgTTTAAACCATCACATCTGATTTGAGGGGATTCAGGATGGAGGCACGCGCACTgtgcttcccattcatttccaGACAAATTAAATTATTGCGGGTTTATATATGAAGTTAATACAAAGTGAAGCAATAGAGGCcggtttgaaaaaaaataaaattataattcCAGGCGGGTTCGGGATTTAACAAATGGAGAAATATTTTTGATTGAAAGTAAATCAGCAAATCTTCATTGTCACAATTTGT

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0030878 thyroid gland development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU255793 lncRNA upstream 129259 31674705 ~ 31752206 (+) True G188757
TU255807 lncRNA upstream 160178 31720092 ~ 31721287 (+) True G188768
TU255801 lncRNA upstream 170494 31708879 ~ 31710971 (+) True G188763
TU255799 lncRNA upstream 177818 31703031 ~ 31703647 (+) True G188761
TU255776 lncRNA upstream 283750 31597215 ~ 31597715 (+) True G188749
TU255856 lncRNA downstream 34197 31918999 ~ 31927133 (+) True G188809
TU255863 lncRNA downstream 62396 31947198 ~ 31952652 (+) True G188816
TU255866 lncRNA downstream 83821 31968623 ~ 31968941 (+) True G188818
TU255867 lncRNA downstream 100510 31985312 ~ 31986086 (+) True G188819
TU256051 lncRNA downstream 258314 32143116 ~ 32143380 (+) True G188960
XM_039782524.1 mRNA upstream 12169 31866894 ~ 31869296 (+) True nkx2.2b
XM_039782525.1 mRNA upstream 12169 31866894 ~ 31869296 (+) False nkx2.2b
XM_039780976.1 mRNA upstream 99399 31776963 ~ 31782066 (+) True LOC120546196
XM_039781689.1 mRNA upstream 124547 31735570 ~ 31756918 (+) True cebpz
XM_039782543.1 mRNA upstream 177441 31620408 ~ 31704024 (+) False LOC120547115
XM_039782828.1 mRNA downstream 209149 32093951 ~ 32105660 (+) True crnkl1
XM_039782818.1 mRNA downstream 226788 32111590 ~ 32145910 (+) True cd109
XM_039782844.1 mRNA downstream 650933 32535735 ~ 32569277 (+) True senp6a
XM_039782846.1 mRNA downstream 650933 32535735 ~ 32569277 (+) False senp6a
XM_039781369.1 mRNA downstream 691654 32576456 ~ 32767003 (+) True myo6a
TU255816 other upstream 100427 31777029 ~ 31781038 (+) False LOC120546196
TU255785 other upstream 271364 31606054 ~ 31610101 (+) False LOC120546816
XR_005637055.1 other upstream 377237 31504009 ~ 31504228 (+) True LOC120547352
XR_005637054.1 other upstream 380411 31500835 ~ 31501054 (+) True LOC120547351
XR_005637053.1 other upstream 382137 31499109 ~ 31499328 (+) True LOC120547350
TU256147 other downstream 691676 32576478 ~ 32622264 (+) False myo6a
TU256417 other downstream 1443301 33328103 ~ 33331713 (+) False pex7
TU256470 other downstream 1569194 33453996 ~ 33458768 (+) True G189269
TU256525 other downstream 1756818 33641620 ~ 33685556 (+) True G189309
XR_005637066.1 other downstream 1878663 33763465 ~ 33763626 (+) True LOC120547364

Expression Profile