RNA id: XM_039782197.1


Basic Information

Item Value
RNA id XM_039782197.1
length 1965
RNA type mRNA
GC content 0.41
exon number 7
gene id pinx1
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 17919578 ~ 17949445 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGTTTACGACATACACAACCAGCGTGGTCATATTATCCATGGGTCATATTGTCTTCAGGCATTTTCTGGGATACCCTACGCAACTTGCGTCAAGCTGTTTAAGGACCACAGAATGTCCATGCTTGCTGAACCCCGGAGGAAACAGAAGTGGTCTGTTGACCCCAGGAACAGCGCCTGGAGTAAGGATGACTCCAAATTCGGTCAGAAGATGCTGGAGCGAATGGGCTGGTCCAAGGGCAAGGGCCTGGGCAGAAGTGAGCAAGGCTCCACTGACCATATCAAAGTAaaacttaaaaacaacaactatgGTCTTGGAACCAGTGCCAGCTATGAGGATAACTGGATTGCCCACCAAGATGATTTTAATGAGCTGCTTGCTCAACTGAACAACTGCCATGGTCAAAACAGCGGCACTGAACCTCCACCACCAGAGGAGCCGAAAGGATTCAGCTTGGAAGAGAAGTCCAAGACCTCCAAAAAGAGGGTCCATTACATGAAGTTCACTAAGGGAAAGGACCTGTCCTCCCGCAGTGAAACAGACCTTAACTGTATCTTTGGGAAAAGAGGAAGATCTGCCAATGACAAAGAGCAGGAGAGCAACAGCAATGATTCTCAGGGTGAGACAGAGAGTTTTACTCCTGCTGCCTTTGAACTGGATACAGAGTCAATCACCAATACTGTGAAAAGTACTCTAACTATGCAGGAGTATTTTGCACAGCGAATGGCTCAGTTGAAAAAGGCTCGTGGACAGGACCAGAGTACAGCTCCCTCAGTGGAGACCAACGAGACATCTGGTCCATCTGAGGAACCCAGTCCCATCCTCATCAGCGACAATGAGTCGGAAGAgtccaaaaagaaaaagaagaaaaagaagagcaaaaagtCATCTTATGAGCTGGAAGTGATTGAAGAGAACAGTACTGCTGCTCCTATCATAATAGTGGACGATGAGGACGAACAGCAGGAGCGTTcggggaaaaagaagaaaaagaggaaaattgTAGAAAGCGAAGGAGCTACAAATGAGAACTGTAGCTCCACCTCTGGTGTGGAGCAGAACTGTGAGGAGTTGCCTCCgtcgaagaagaagaagaagaagcttaAAAAACACCATAAGGAAACTGAGCTTCTAAATGGACACGGACCAGCTGAGGATCAAACTGTAGAATCTGAGGTTGTtcacaaaaagaagaagaaacaacgAGAGGAGGTGAACGATGTAGTTAAAGAGAATGAGGAGGAGCTGGTACAGAAAAAATCCAAAAaggacaagaaaaagaaaaagaaatgtcatGAATAGGATGAAATTAATAGAATGGCATCTAATGCCACCCATGATCATGGGGGCACATGTGTACCAAGTGATTGCCTTAAATGTCTTGTATACATATAGTCTAATAACCTTAGACATTtgatcacataaaaaaaaactgtctacAATGTATTCATACAGACATAAGTTGGCATTCTTTCTTAAATGATTCCGTTTTCCATGAAATTTAGAAATAATTGGATGAGTGCTGCCATGTGTCTCttaatgaataaaatgtatccaaattgcttaattatttttgttgttttgaaaactatattttttttttcttcaaatgccaTCATTTATGTCTTACCACCTTATATGCATCATCATTACTATTTATTTAGCATTCAAAGTGGATTTTACTTTCTTGCCAGCAATTAGTTTAACCATCTTATTCCAGTTCTTCAGACAATGGATATCTCCTATAATGAAAGTGACCCAGAGACAGTTTTGTTAGTTTTGCAAAAACAACAGAAGCCCACAGACATTAGTGGTCTTCTTGATGCGATAAAACTTGACAAATATGAACAGATGTCATTTCTTTGTCTGACAAATTTATGAGCCGTTTGAAAACTGACAAACTCTGGTGCTTTAAATCAaatcccttcttttttttttttttaaataaatccaaAATTTCAATGCA

Function

GO:

id name namespace
GO:0043086 negative regulation of catalytic activity biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250777 lncRNA upstream 154786 17763969 ~ 17764792 (+) True G185156
TU250773 lncRNA upstream 155842 17760676 ~ 17763736 (+) False G185155
TU250930 lncRNA downstream 107966 18057411 ~ 18059367 (+) True G185254
TU250934 lncRNA downstream 153580 18103025 ~ 18104904 (+) True G185258
TU250935 lncRNA downstream 153580 18103025 ~ 18104517 (+) False G185258
TU250941 lncRNA downstream 189448 18138893 ~ 18140219 (+) False znf513a
TU250952 lncRNA downstream 206525 18155970 ~ 18158108 (+) False LOC120546825
XM_039781825.1 mRNA upstream 6548 17906741 ~ 17913030 (+) True tdh
XM_039781826.1 mRNA upstream 6548 17907687 ~ 17913030 (+) False tdh
XM_039781823.1 mRNA upstream 15065 17888641 ~ 17904513 (+) False mtmr9
XM_039781821.1 mRNA upstream 15065 17888645 ~ 17904513 (+) False mtmr9
XM_039781822.1 mRNA upstream 15065 17888857 ~ 17904513 (+) True mtmr9
XM_039782812.1 mRNA downstream 3114 17952559 ~ 17955598 (+) True sox7
XM_039781950.1 mRNA downstream 26668 17976113 ~ 17993998 (+) False LOC120546768
XM_039781948.1 mRNA downstream 26674 17976119 ~ 17993998 (+) True LOC120546768
XM_039782801.1 mRNA downstream 52625 18002070 ~ 18011951 (+) True blk
XM_039782305.1 mRNA downstream 71511 18020956 ~ 18043664 (+) False fndc4a
TU250889 other upstream 2330 17916853 ~ 17917248 (+) True G185237
TU250755 other upstream 233180 17682558 ~ 17686398 (+) True G185145
TU250758 other upstream 246692 17669172 ~ 17672886 (+) False G185145
TU250558 other upstream 553601 17341837 ~ 17365977 (+) False map7b
TU250559 other upstream 553601 17341837 ~ 17365977 (+) False map7b
XR_005637008.1 other downstream 71518 18020963 ~ 18054926 (+) True fndc4a
XR_005637007.1 other downstream 71518 18020963 ~ 18052071 (+) False fndc4a
unassigned_transcript_1081 other downstream 982871 18932316 ~ 18932387 (+) True trnae-cuc_27
TU251420 other downstream 1254709 19204154 ~ 19208096 (+) False LOC120546624
XR_005636888.1 other downstream 1480150 19429595 ~ 19539308 (+) False nhsl1b

Expression Profile