RNA id: XM_039782205.1


Basic Information

Item Value
RNA id XM_039782205.1
length 2336
RNA type mRNA
GC content 0.55
exon number 6
gene id lats1
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 26619981 ~ 26628564 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CATCGTCAAACTTGTTGCTTGCTGTTGTACTTGTCATTCAGACATCCCAGGAATTCAACACGACTAGGGACGAGCCAGCTCGGCACAACAAGGACATTTTAAGTTAAAAATCACGTCCTTTTCGCCGTGAAAAATCAAGGAGTACCGTTTGTGGTCAAAATAGGACAATTGTTGAGAAAAGCGGCAGCTACAGACACTGCATGCAGATGTGAGGTCAGACATCAGAGATCTCTGCTACCCTCTGCTGCAACCCTGGACTGAGCGACATCCTCTTCATCCCCTTCATCGTCCTCATACATGCTCTTACAtgaagagaggaggggagaaacCCGAAGGATACAGACAGATGAGACCCAAAACGTTCCCCACCAGCAACTACAGCGGCAACAGCCAGCACATGCTGCAGGAAATACGGAACAGCCTGCGCAACTTGTCCAAACCCTCGGACCCACCTAAAGTGGACATTGGAGGAGCTGGAAAAATGCTTCCTGAGGACCCAAGGCAACAGGGGCGCTGCAGCAACCCCAAAAACCCCTACCACAAGGCCTTACAGGAGATCCGCAAATCCCTGATGCCTTTTGCCAATGAGCCTAGTACTTCCGGCCCTGAGGTGAACAAACACATGTCGTTGGAATCCCCCTGTACTGGATTTGAGGAGAACAACAGGACTATGGGGGCAGTTATAGACTTCACAGGTAAGGTAAGCTACCAGGACTCCATGAGGGAACAGATGGCCAACCCCAACACCACAGGTCTGAAAGCCCCAGGAGCTCATATCCAGCAGGCTGTGCTGAGGAGGCCAAGCTGGAAAGGCTCTAAGGAGTCTTTGGCGCCTCGACACGGTCCTCTCGTGGTGGATGGAATTATGTACCGCTCGGACAGCCCCGGACCACCTCCTGCCTTCCAGCAGGGCCACCTTGCTAACAGTCAGAGAGTCAATCCTCCACTGCCACCTCAGGTGCGCAGTGTCACACCTCCACCAAACCGTGGTGCCATGCCTCCTGCATCATCCCGGGACAGCAACCCACGCTACCCTGGCAACATGGATTACCTTGTGCCCCGCATCTCTCCGGTACCCCAGGGGGCCTGGCCTGATGGTTACCAATCATCAGCACCTCAGAATCAGCGTGGGATCAGCCCAGTCCCTGTGGGCCACCAGCCCATCATAATGCAGAGCTCTGGGGGGAATAAGTTCACCTTCCCCTCCAGCTGGTCTCAGAATGGCTCTCCTCAGCCAGACTACATGGCTGGGGGTAGCAGACAGCCTCCTCCCCCATACCCGGTTAACCAGAGCAGCCGTCACAGTCCCACTGACCAGCAGATGCAGTCGGGAGGACCTTCATCCTCTCCCTCTTACATCAACGGTGGAAACATCCCTCAGTCCATGATGGTTCCTAACCGGAACAGTCACAACCTTGACATGTATAACATAGGTCCTCCTCAGTCCTGGTCCCAGGCTCCTCTGAACCCCAACCAGCCCCAGTCTTCCTCTGGCAATAGCAGCAACCAGGATCTGTCGCCGTCGTGGCAGCACAACATGCCGGTCCGCTCCAATTCCTTCAACAACCACCAGCTGAACAGCAGACCGTCCCACCCATCCAGCTCCCAGCCATCTGCCACCACGGTCACTGCCATTACCCAGGCTCCCATCCTGCAGCCAGTCAAAAGCATGCGTGTCCAGAAACCTGAGTTACACACCGCTGTCGCTCCTACACACCCTCCATGGATGCAGCAGCCTCCACCGCCTCAAGCTGCACCCGCTTACCCAGAACCCCCAGCCCCTGTACCTCAGATCCCTGTCGTACCAGAAGTTCCCAGCTACCAGGGCCCCCCTCCGCCCTATCCTAAGCATCTCCTCCAGCAGCAGGCTACAGGCCCCCCTGCCTACGATCCAGGGGCCAATAAGCTCGGCACAGGCAGAGAGCAGCCCGCAGACGAGGAGAGCACTGGAGGCGACAGCTCCCAAGACAAGACGACGGAAAGCCCCGAAAGCACCGCAGCgacggagaaggagaagaagcaAATCACAACGTCGCCTGTTCCTGTCCGCCGCAACAAGAAAGACGAAGAGCCGAGAGGGGAGTCCGGAAGGGTCGCGCTATACTCACCCCAGGCCTTTAAGTTCTTCATGGAGCAACATGTGGAGAATATCCTAAAGAACCATCAGCAGAGGATTCGGAGGAGGAAGCAGTTGGAAAGTGAGATGCAAAGGCTGATCTAAAAAGGTGGGTTTGTCTTCAGAAGCTCAGGAGCAGATGCGTATGATGCTCTGCCAGAAAGAGTCCAACTACATCCGGCTAAAGCGAGCCAAGATGGATAAAGCCATGTTCAAACGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254075 lncRNA upstream 188710 26430569 ~ 26431271 (+) False tfap2d
TU254064 lncRNA upstream 295247 26324516 ~ 26324734 (+) True G187536
TU254063 lncRNA upstream 304327 26315122 ~ 26315654 (+) True G187535
TU254024 lncRNA upstream 347386 26272368 ~ 26272595 (+) True G187508
TU254021 lncRNA upstream 359087 26257495 ~ 26260894 (+) False atp5mj
XR_005636872.1 lncRNA downstream 254475 26879446 ~ 26885536 (+) True LOC120546372
XR_005636870.1 lncRNA downstream 255750 26880721 ~ 26885536 (+) False LOC120546372
XR_005636871.1 lncRNA downstream 255750 26880721 ~ 26885536 (+) False LOC120546372
TU254247 lncRNA downstream 262736 26887707 ~ 26888304 (+) True G187672
TU254272 lncRNA downstream 291721 26916692 ~ 26918285 (+) True G187692
XM_039782379.1 mRNA upstream 719 26613770 ~ 26619262 (+) True nup43
XM_039782378.1 mRNA upstream 15156 26597284 ~ 26604825 (+) True lrp11
XM_039781353.1 mRNA upstream 23207 26516843 ~ 26596774 (+) True map3k5
XM_039782813.1 mRNA upstream 167616 26438486 ~ 26452365 (+) False tfap2b
XM_039782169.1 mRNA downstream 8524 26633495 ~ 26652130 (+) True rab10
XM_039782871.1 mRNA downstream 35780 26660751 ~ 26682716 (+) True LOC120547317
XM_039782872.1 mRNA downstream 35780 26660751 ~ 26682715 (+) False LOC120547317
XM_039781608.1 mRNA downstream 70460 26695431 ~ 26737803 (+) False LOC120546586
XM_039781609.1 mRNA downstream 70460 26695431 ~ 26727545 (+) False LOC120546586
TU254081 other upstream 167677 26445650 ~ 26452304 (+) False tfap2b
TU254083 other upstream 167677 26445650 ~ 26452304 (+) False tfap2b
TU254022 other upstream 338613 26276695 ~ 26281368 (+) False gareml
TU253978 other upstream 589581 26028060 ~ 26030400 (+) False nudt14
unassigned_transcript_1083 other upstream 1400041 25219868 ~ 25219940 (+) True trnat-ugu_3
XR_005637060.1 other downstream 32370 26657341 ~ 26657503 (+) True LOC120547357
TU254123 other downstream 57924 26682895 ~ 26685507 (+) True G187574
XR_005636891.1 other downstream 70459 26695430 ~ 26727545 (+) True LOC120546586
XR_005636894.1 other downstream 70459 26695430 ~ 26727545 (+) False LOC120546586
XR_005636892.1 other downstream 70459 26695430 ~ 26727545 (+) False LOC120546586

Expression Profile