RNA id: XM_039782211.1


Basic Information

Item Value
RNA id XM_039782211.1
length 6467
RNA type mRNA
GC content 0.57
exon number 40
gene id LOC120546943
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 13148651 ~ 13202337 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

acatttctccACGACTGACCAACCGCCACTAACATTTACTCCAAGGGGATAGTTAGCCCAAGAATAACTTGGCGGTTGTTTATTTGCTCGTGGAGGACGGCGTTTTGCGGGGTAAACCGTACATCGCGCACTAATTGTCGCTTCGCGGAGAAATACTCGACGCAGCCGGGACTTTATGTGAGCGGAGCTGAATGGAGGCAGCCTCTCTTCCTGGTGGATAAACAGTGACAGCTACAGGGCAGCCACCTAGACCCACCACACAGGCTGTGGCGCTGCCCTGGCAAACAACACCAAAATGGCTTCAGACAGTACACACATCGCGCAGTTGACTTCTGAACTGTACTTCCTAATAGCCCGATTTCTAGAAGCTGGACCGTGTCAAAAAGCAGCCGAGACCCTGATAAGGGaggtggaggagaaggagCTGCTACCCATAAGGCTGGACTGGACAGGGCAGGAACACCCCGGGACGTACGAGAATTTGgtgaagcTATACCGGCACATCAGTCCAGACCACCTGCTGCAGGTCTGCTCCAGAGTTTGTCCGCTGCTGGAGAGCGAGCTCCCTGCCAGCGTGCCTGGACTCAGCAGCCTGCTGGGGGCCGGCAGACAGAATCTTCTCCGCTCCAGCAAGAgCTGCAAGAATGTTGTGTGGAAGGGCTCAGCGCTGGCTGCGCTGCACTGTGGACGACCACCGGAGCCGCCTATTATCTATGGGAGCCCGCCTAATATTGTCGAGACGAACTTCGGCCGTCGACTGAACGGCTCCTACCGTCTCCGGCAGCTGCTGCCCACGGCTGTGTACCTGCACATGAAGATGCACAAGAGGATCCTGGGACACCTGTCATCGGTGTACTGCGTCACCTTCGACAGGACGGGACGACGCATCTTCACGGGCTCAGACGACTGCCTTGTGAAGATCTGGGGAACAGATGACGGCCGTCTGCTGGCGACACTGCGCGGCCACGCTGCTGAGATTTCCGACATGGCCGTCAGCTACGAAAACACCATGATCGCTGCTGGGTCCTGTGACAAGACTATCAGGGTGTGGTGCTTACAGACCTGCGCCCCTTTGGCCGTCCTGGAGGGACACGCTGCCTCTATCACCTCACTGCAGttTTCTCCTTTCTGTTGCGGCTCAAAGCGTTACCTGTCTTCCACCGGAGCTGATGGCACCATCTGCTTCTGGCAGTGGGATGCACGCACGCTCAAGTTTGGTCAAAGACCCAGTAAATTCACGGAGCGTTCCAGACCTGGCGTCCAGATGATCTGCTCCTCCTTCAGCGCAGgtggtATGTTCCTGGCCACAGGAAGCACGGATCACATCATCAGGGTGTACTACTTTGGGTCAGGCCAACCTGAGAAGATTTCGGAACTTGAGTCCCATACAGACAAAGTCGACAGCATCCAGTTCTCACATTGCAGTGACAGgtttgTAAGCGGCAGCAGGGATGGTACAGCCCGAATCTGGCAGCTGCAGCCTCAGGGCTGGAGGAGCATTCTGCTGGACATGCAGACCAAATTACccggGAAGTACAACCCTCCTCCGCTGGAAGACAAGGTGACCAAACTGAAGGTTACCATGGTAGCATGGGATCGCCATGACAGCACAGTGATCACAGCAGCCAACAATCTGACGCTGAAGGTGTGGAACTCCACCACCGGCAACCTCGTCCATGTCCTGATGGGTCATGAGGATGAGGTGTTTGTCCTGGAGCCACATCCCTTTGATCCGAGAATCCTTTTCTCAGCGGGGCATGATGGGAACTGCATCGTGTGGGACCTGGCCAGAGGAGTCAAGATCCGCTCCTATTTCAACATGATCGAGGGCCAAGGCCACGGAGCGTTGTTTGACTGCAAATGTAGTCCAGATGGGCAACATTTTGCAGCCACCGACTCCCACGGACACCTGCTCATCTTTGGCTTTGGCTCCAGCAGCAAGTATGACAAGATAGCGGACCAGATGTTCTTCCACACCGACTACCGGCCACTGATCCGAGACGCCAACAACTACGTGCTGGACGAGCAGACGCAGCAGGCGCCACACCTGATGCCCCCTCCCTTCCTGGTGGATGTGGACGGgaacccccacccacccagatACCAGCGGCTGGTGCCTGGCAGGGAGGGCTGCAGGGACGAGCAGCTCATCCCGCAGATGGGGGTCACTTCCTCAGgcctGAACCAAGTGGTGAGTGAGCAGGCGGTGGACGGCTCCAGTCCCCTGGATACGATGATTCAGAGGCTGCAGCAGGAGCAGGACCAAAGACTGGGAGCCAATGACACCAGGTCCAACCGAGGATCGGTGGGATCGCCCACAGAGGTGCACTCTCCGCCCAACGTGGGTCTGCGTCGCAGCGGGCAGATCGAGGGCGTCCGCCAGATGCACAGCAATGCCCCGCGCAGCCAGATGGCCACAGAGGGAGACCTGGTGGCCTGGAGCCGCAGGGTGCTGGTCCCGGAGCTGGAGAACGCCTCTGTCAgGAGACAGATAAACTGGCGTGAGGCTAAAGGGGAGGAGGAGATTAATATTTATCAGTCAGAGAGGAGGCGACGCACCATCCACTCTCTCCCCAAGGAGAGCAGGGTTCACCCGACATCCGAGTCGGTCGACGAGGGGAGGAGGAGCCAGGGTAACCACGGCTACCACACGCGTGCAGCTATGGAGGAGACGAGCCGCCAGAGCGCCGAGGCTGCCGATGACGATGAAAGCACCTCAGAGGTAGATACGGGAGAGGTGGAGGTTCGGCAAACCAACGGGCATTCCTCCTCcgaggagaaggaagaggaacCAAAGGAGCCCTGGCCGGATGACCACAGTAGTTCAAGCGACTACTCCAGCGATTACTCCGACTGGACAGCGGACGCGGGGATCAACCTCGAACCGCCCAAGAAGAGCgtgaaagtgaaaaagaaaagcagcagctcagaggaagacggagagaagaagagggatgggaagaaagaaagaaagaaagataaagCAGACAAAGACGGCGCGTTACCAAAGAAGAAGCAGCCAAAGGAGAAGAGGAAGAGGACCGAGTTTCAGGAGCAAGGGCTAACTCTGGAGGAGTGGCTTCCTTCTGCCTGGATCACAGACACGGTCCCCCGGAGATGTCCCTACATACCCCAGATGGGAGACGAGgtataCTACTTCAGACAGGGCCACGAAGCCTATGTGGAGATggccaaacaaaaaaagatttacagCATCAACGCTAAGAAGCAGCCCTGGCACAAGATGGAGCTACGGGAGCAGGAATTGATGAAGATAGTTGGCATCAAGTATGAGGTTGGCTTGCCCACACTGTGCTGTCTGAAGCTTTCCTTCCTGGACCCTGACACGGGCAAACTGACCGGAGGATCCTTCTCTATGAAATACCACGACATGCCCGATGTGATCGACTTCCTGATACTGCGGCAGCAGTTTGACAATGCCAGAAGGAGGCAGTGGAGTATAGgcgaCAGGTTTCGGTCAGTGATTGACGATGCCTGGTGGTTTGGGACCATTGAGAGCCAGGAGCCCTACCAGCCTCAGTACTCTGACAGCCTGTTTCAGTGCTACAATGTCTGCTGGGATAACGGAGACACAGAGAAGATGAGTCCTTGGGACATGGAGCCCATACCTGATGATGCCACGTTCCCTGACGAGTTAGGCACCAGTGTCCCGCTGGTAGAAGAGGAACAGAAGGAGCTGCTGTACGTGCCACTGGACGGGGAATGGGGCTGCCGCACACGCGCAGAGGAGTGCGAGCGCATCATCAAAGCCATCGACCAGCTCTGCACACTCGATGTTGCGGCGCCGTTTGCCTTTCCAGTGGACCTGCAAGCTTACCCCACATACTGCACGGTGGTGGCCTACGTCACTGACCTGAGCACCATACGGGAGAGGCTGGTCAACCGCTTCTACAGGCGACTGTCCTCTCTGATGTGGGAGGTTCGTTACATCGAACATAACGCACAAACATTCAACGAGCCCGGATCATTCATCGTCACTACCGCCAAGTTTGTCTCTGACCTCATGCTGCAATTCATTAAGGACCAAAATCTGACGGACCTCAAGCCCCTTTACAAAACTATGAAGAAGGCTACCTTCTCTGACTCTGAAGATGAGGACGAcgaggaagaggatgaggatACTAATACTCCTGGAACATCCACACGAAACCATAAGggTCGTCGACCCACTCAGCGGCAACTGCGAACCCGACCCCCTTCGTACGACCCTCATGCGTGGCGGGGCCGCTGTAAGGAGCTGCTGGACCTGATCTTTCAGTGTGAAGACTCGGAGCCCTTCAGAGAACCTGTGGACCTGCAGGAATACCCGGACTACCTGCAAATAGTTGACTCACCGATGGACTTTGGCACCGTTCTCAACACGCTCAAAAATGGAAAGTACCAGTCTCCCATTGAGCTCTGCAAAGATGTCCGGCTCATTTTCAGCAATTCCAAAGCTTACACGCCCAGTAAGAAGTCTCGGATCTACAGTATGAGTCTGAGGCTCTCTGCGCTGTTTGAGGAGCACGTCAGCTCCATTCTGGCCGACTACAAAGCCATCCACGGCCTGACCAATAAACTGACCAGACAGGGAACGGACAGACAGACGCGACACACTACGGACAGACAGACGCGGCACGccatgaagaggaggaggaggagcgaaTCTCCAGCTAGCAGCACCGCGTCCAGTCCAGAGAGGAAGAGACGTGTATCATCCAGGGGGACAGGGAAAAAGGAGCCGTCACCACCACCTTCACGAGCCTCCTCTCTGAGACAGAGCGTCCCCGTCAAACAGCCCCCTCAGCTGGTCAACGGGAAGTCCGACACAGCGGCCGCAGGGCGTACACGAAGTGCGGCACGCCATTCTACGCACTCTccaccctcctcttcctcctcacatAACGCTGGAAGCAGCACACAGAGCACAGCAGAGTCTACTCGCTCGCTCAGGGCTCATAACTCTGTGTCAGCTTCGACGACAGCAGCTCCTCAAAGGGTGACACCCTCTCCAGCCGCAGACAGTAACAGTGGAGgaagcacccggaggaaactcAGGACTCCTGTACGGCTCACACCTGGATCTCCCGTCAGCCCTTCGTCTCCGAGCACAGTCCACCTGAACGGCCACGGCAGTCACGTGACCCTGGgagtggggaggagggggcggaaATCCAAAGCGGAGCCACCAGCGAGTCCCCCAGAAGTCCCGGCTCCGGGGAGCCCTTCCAGACCCAGAGGCCGCCCTCCGGGCAAGAAGCGCGGCAGGAAGAGCAAGCAGGAGCTGGAGGAGATGAGACGGAGCGGCAAGCGCAGGAGCTCCACCCCCGACGATGAGCTCGACCAATCGACGGGGGACGACGAAGGCGGCACGTCTTCTGCTCAGGAAACATCCGTGCTGTCGGACTCCGGCGCGCCGCCGACGCCGAGGCGGCGCGGCCGGCCCCGGGCGGCAAGGACCGACGAAGCCGCTCCTCCCGCTGAGTCACCGGAGCCATCTCCgctgaggaggagcagcaggagggcCAACGAAGAGGCCACGCCTCCTCCCCAGACTGCTCCTCCTCAACGATCCAATCAGAGGGAGTGTCCAAACGAGGAGGAAGGAGACGAGGCCGGGGGGTCGATGCGCACACGTAACCAGGGGCGACGGTCGGCCTGGTACATGGAGGAGGACTCCGAGGAGGAGCAGAGGCAGCTGCTGTTTGAGGACTCGTCGATCACCTTCGGCACCTCCTCAAAGGGACGCGTTCGCAAGCTGACAGAAAAGGCCAAAGCCAACCTCATAGGCTGGTAACCCGGGGCAACGGAACAGACGCACAGGACGTGAGGAGGAGGCTGACTTGCCCTGACAGAGGAGAAATCCACCTGAGATTTCTCAGCCTACGCGACAGGAAGAGTAGCGGGCTGAGTCGAGGAAGCCGTGCTTGGTgttgtgtgcatctgtgtgcgCGTAATGTGCGTGTACCGTCTGGGGAGCCGCTAGTCCAGCGTGCTGCTATTCAGAGCCGCGGCGATGGAGAGACACAACAGCGCAAGTTATCTGTCGACtccactcctccctcctcttggCCCAGAAAGTACATCACTAACGCCAGCCGTCGGCTTTCTGAATCATTTGTTCCACCTCCTCCTACATTATTGGTCCATGTTGGATCCCACAGGAGCTCACTGACTCCGTTGCCCGGCGGTCTCGTGACTCGCTCCTGTCCAGCGAACCACTTCTCCCCTCCGTCTGCCCTCAAACACTGTTGGTGTCCGACTGGGCACAACAGGAGTTGAACAGTTTTAGTActtgatgataaaaaaaaaaatttaaaaaatcccAAGGAGAGCTGGGTGtatcttctctccctctttggACTTTTCGAGTGTGTCTCTGCTGGGTAGGTCAAAGACGCCCACTGAGCTGAAACTGTTAGGTCTGTGAGGGATCACAGACCGCTGGGCTGAcaaccccgcccccc

Function

GO: NA

KEGG:

id description
K11798 BRWD1_3; bromodomain and WD repeat domain containing protein 1/3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249160 lncRNA downstream 114154 13034252 ~ 13034497 (-) True G183981
TU249128 lncRNA downstream 225844 12841032 ~ 12922807 (-) True G183952
TU249130 lncRNA downstream 239904 12907315 ~ 12908747 (-) True ost4
XR_005636849.1 lncRNA downstream 262876 12884370 ~ 12885775 (-) True LOC120546274
TU249051 lncRNA downstream 521945 12592618 ~ 12626706 (-) True G183908
TU249225 lncRNA upstream 47254 13249591 ~ 13250436 (-) True G184026
TU249235 lncRNA upstream 53649 13255986 ~ 13257962 (-) False runx2b
TU249249 lncRNA upstream 116151 13318488 ~ 13318930 (-) True G184049
XR_005636829.1 lncRNA upstream 136846 13339183 ~ 13398575 (-) True LOC120546199
XR_005636830.1 lncRNA upstream 148801 13351138 ~ 13398575 (-) False LOC120546199
XM_039782724.1 mRNA downstream 3556 13141455 ~ 13145095 (-) False si:dkey-261l7.2
XM_039782721.1 mRNA downstream 3556 13141455 ~ 13145095 (-) True si:dkey-261l7.2
XM_039782723.1 mRNA downstream 3557 13141455 ~ 13145094 (-) False si:dkey-261l7.2
XM_039782725.1 mRNA downstream 4099 13141455 ~ 13144552 (-) False si:dkey-261l7.2
XM_039780918.1 mRNA downstream 133424 12998089 ~ 13015227 (-) True LOC120546166
XM_039782223.1 mRNA upstream 3993 13206330 ~ 13215900 (-) False hmgn3
XM_039782222.1 mRNA upstream 3993 13206330 ~ 13215885 (-) False hmgn3
XM_039782219.1 mRNA upstream 3993 13206330 ~ 13215877 (-) False hmgn3
XM_039782221.1 mRNA upstream 3993 13206330 ~ 13215875 (-) False hmgn3
XM_039782218.1 mRNA upstream 3993 13206330 ~ 13215869 (-) False hmgn3
TU249125 other downstream 140783 12960498 ~ 13007868 (-) True LOC120547209
unassigned_transcript_1080 other downstream 565410 12583169 ~ 12583241 (-) True trnat-ugu_2
TU248695 other downstream 1774036 11374108 ~ 11374615 (-) True G183650
XR_005636937.1 other downstream 2538026 10501920 ~ 10610625 (-) False LOC120546776
TU249194 other upstream 3970 13206307 ~ 13215824 (-) False hmgn3
TU249195 other upstream 3970 13206307 ~ 13215824 (-) False hmgn3
TU249197 other upstream 3970 13206307 ~ 13215824 (-) False hmgn3
TU249306 other upstream 256279 13458616 ~ 13468065 (-) True fkbp1b
TU249319 other upstream 279587 13481924 ~ 13491128 (-) False mfsd2b

Expression Profile