RNA id: TCONS_00070915


Basic Information

Item Value
RNA id TCONS_00070915
length 3635
RNA type mRNA
GC content 0.51
exon number 20
gene id XLOC_036283
representative False

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 14003232 ~ 14052349 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGGGGATCTGGGCAATAGCACAGTAGAGTTCCACCCTAAAAAGCCAGGAATGGACCAGGGAGGCCATGATGGGGATTTTGGGGTGTCGGTGGATGAGTTGTGCTCACTGATGGAGCTCAGGGGAGCCGAGGCCCTGCAGAAGATCCAGGAGAACTACACAAATACAGAAACCCTTTGTCACAGACTCAAGACTTCACCTGCAGATGGGCTATCGGACAATCCTGCGGATCTGGAGAAACGTCGAAAGGTTTTTGGAATGAACTTCATCCCTCCTAAGCAGCCCAAGACCTTCCTTGAGCTTGTGTGGGAGGCTCTACAGGATATTACCCTCATAATCCTGGAAATAGCGGCCATTATTTCCCTCGGACTGTCCTTTTACCAGCCGCCAGGAGGGGACAGTGAAGCATGTGTTGAAGTGAGTGAAGGTGCGGAGGACGAGGGAGAGGCGGATGCCAACTGGATTGAGGGTGCAGCTATCCTGCTATCGGTGATCTGCGTGGTGCTGGTGACTGCCTTCAATGACTGGAGCAAAGAAAAGCAGTTTCGTGGCTTGCAGAGCCGCATCGAACAGGAGCAACGTTTCGCTGTGGTGCGCAACAGCACGGTCATTCAAATCCCTGTGGCTGAGATGGTGGTGGGGGATATTGCCCAGGTCAAATATGGCGACCTCCTGCCTGCGGATGGTGTTCTCATCCAAGGGAACGACCTAAAGATCGATGAGAGCTCCCTCACTGGAGAGTCTGATCACGTACGCAAATCCATTGACAAGGATCCCATGCTGCTGTCAGGCACTCATGTAATGGAGGGGTCAGGGAAAATGTTGGTGACTGCAGTTGGCGTCAACTCTCAAACGGGAATCATTTTCACCCTACTGGGGGCCGGAGAAATGGAGGAGGAGAAGAAAGACTGCAAGAAAGGGAAACAAGATGGAACCCTGGAGAACAACCAAAATAAAGCTAAGAAACAGGATGAGGCTGTTGCCATGGAGATGCAGCCTCTGAAGAGTGCAGAAGGTGGTGAAGTGGaggagaaagagaagaaaaaagcCAGTGTGCCCAAGAAGGAGAAATCCGTTCTTCAGGGCAAACTCACCAAGCTGGCAGTGCAAATTGGGAAAGCAGGTCTGGTGATGTCGGCCATCACTGTGATTATCTTGATGCTGTACTTTGTGATTAAAACGTTCATTGTTCATAAACAGCCATGGCTGACAGAGTGCACACCGATCTACGTGCAATACTTTGTCAAGTTCTTCATCATTGGAGTTACAGTTCTGGTAGTGGCAGTGCCTGAGGGTCTGCCGCTGGCTGTCACCATATCACTGGCCTACTCCGTAAAAaAAATGATGAAGGATAATAACCTTGTGCGTCATTTGGATGCCTGTGAGACTATGGGCAATGCCACGGCTATTTGCTCTGATAAAACAGGGACCCTCACCACTAACCGGATGACAGTAGTCCAGATTTATATAGGGGACCAGCTCTTTCGGGACATCCCAACGCCAGACCAGATTAACCCAAGGACTTTGGAGCTCATCAGCAGCGCTATTGCTGTGAACTGCGCCTACACCTCCAAAATAATGCCTGCTGATAAGGAAGGTGGGCTGCCCAAACAGGTGGGTAATAAGACAGAGTGTGCTCTGCTGGGACTCGTCCTGGACCTGAAGCAGGACTACCAAGCTGTGAGAGAGCAGATCCCAGAGGAGTTACTCTATAAAGTCTACACCTTTAATTCAGTCCGAAAATCCATGAGCACCGTCATTCAGATGCCTGATGGAAGCTTCCGCTTGTACAGCAAAGGAGCCTCTGAGATCCTGCTCAAAAAATGCTCGTTCATTTTATCGCGTGACGGCGAGGCTCGTGCTTTTAGGGCACGGGACAAAGACGAAATGGTAAAGAAAGTGATTGAGCCGATGGCATGTGATGGCCTTCGTACGATTTGCATTGCATACCGGGAGCTGCCAGCTGACCCCCTGCCAGACTGGGACAATGAGACCGACATCGTCTCCAACCTTACCTGCATCACTGTGGTCGGCATTGAAGACCCTGTTCGACCAGAGGTCCCAGATGCCATCAGAAAGTGCCAGCGAGCAGGCATCACTGTGCGTATGGTGACGGGTGACAATATAAACACTGCACGTGCCATTGCTGCCAAGTGTGGCATCATCCATCCTGGCGACGACTTCCTGTGTATGGAAGGAAAGGACTTCAATAGGCGCATCAGGAATGAGAAGGGAGAGaTTGAGCAGGAGCGCATTGATAAAATTTGGCCCAAGCTCAGAGTTCTTGCTCGCTCCTCCCCGACTGACAAACACACTCTAGTTAAAGGTATTATAGACAGCACTGTTGTGGAACAAAGGCAGGTGGTTGCAGTCACTGGTGACGGCACAAATGATGGGCCTGCCCTGAAGAAAGCTGATGTGGGGTTTGCAATGGGCATTGCTGGTACAGATGTGGCCAAGGAGGCGTCTGACATCATCCTGACCGATGATAACTTCTCCAGCATAGTGAAGGCTGTGATGTGGGGACGAAACGTGTATGACAGCATCTCCAAGTTTCTGCAGTTCCAGCTCACAGTGAATGTGGTGGCTGTTATAGTAGCCTTCACCGGCGCCTGCATCACACAGGATTCACCCCTGAAAGCTGTGCAGATGCTTTGGGTCAATCTGATCATGGACACATTTGCTTCTCTTGCTCTTGCTACGGAGCCGCCAACGGAAGCTCTGCTCCTGAGGAAGCCTTATGGCCGAAACAACCCTCTCATCTCCAGAACGATGATGAAGAACATCCTTGGACATGCCGTCTACCAGCTCGTCATCATCTTTACCTTGCTCTTCGCCGGTGAGAGGATCTTTGACATTGACAGCGGCCGTGATGCTCCGCTTCACTCTCCTCCATCTGAGCACTACACCATCATCTTTAACACGTTTGTCCTCATGCAACTCTTCAACGAGATCAATGCCCGTAAGATTCACGGAGAGAGGAACGTGTTCGATGGGATATTCTCAAACCCCATATTCTGTTCGATCGTGCTGGGTACATTTGCAATACAGATCGTGATTGTTCAGTTTGGAGGGAAGCCCTTCAGCTGTTCCCCCTTAAACGTGGAGCAGTGGCTCTGGTGTCTGTTTGTGGGAATGGGAGAGCTGCTCTGGGGTCAGTTGATTTCTTCAGTGCCAACGCATCAGCTGAAGTGTCTGAAAGAAGCGGGCCACGGGCCGGCTCCAGACGAGATGCTGGATGAAGATCTGGCCGAGGACGAGGAGGAGATTGATTATGCTGAGAGAGAGCTGAGACGAGGACAGATCCTGTGGTTTAGAGGACTCAACCGCATTCAGACTCAGATGGAGGTAGTGAGTACCTTCAAGAGAAGTGGTTCGTTTCAGGGTGCAGTGAGACGCCGCTCTTCAGTGCTCAGCCAACTCCATGACGTAACCAATAATTCTACTCCCTCTCACGTAGTTCTCTCCACTGCCAATGCAACTGGTGCCCCCGGGAGTGAGTCCTTACATTCCGTTAACGGCACCTCGTAGAGCCCGTGCACTCAGATGCCTAGCATATacaccaacacacacatgcattgttGCCTGCCTTCAAACGCAACTCGTCTGCTgaatgttgagtgtgtgtgtgtgtg

Function

GO:

id name namespace
GO:0051480 regulation of cytosolic calcium ion concentration biological_process
GO:0070588 calcium ion transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0006816 calcium ion transport biological_process
GO:0006874 cellular calcium ion homeostasis biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0005388 calcium transmembrane transporter activity, phosphorylative mechanism molecular_function
GO:0005524 ATP binding molecular_function
GO:0030165 PDZ domain binding molecular_function
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-174 Predicted to enable P-type calcium transporter activity and PDZ domain binding activity. Predicted to be involved in regulation of cytosolic calcium ion concentration. Predicted to act upstream of or within calcium ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in intracellular membrane-bounded organelle. Predicted to be integral component of plasma membrane. Is expressed in blood; liver; muscle; nervous system; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in X-linked spinocerebellar ataxia 1. Orthologous to human ATP2B3 (ATPase plasma membrane Ca2+ transporting 3).

Ensembl:

ensembl_id ENSDART00000093117

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00070911 lncRNA downstream 34154 13970890 ~ 13972558 (-) True XLOC_036280
TCONS_00072011 lncRNA downstream 290135 13714942 ~ 13716577 (-) True XLOC_036277
TCONS_00070904 lncRNA downstream 328297 13666427 ~ 13678415 (-) False XLOC_036276
TCONS_00072406 lncRNA downstream 700664 13302679 ~ 13306048 (-) True XLOC_036263
TCONS_00072405 lncRNA downstream 1159226 12845269 ~ 12847486 (-) True XLOC_036254
TCONS_00070929 lncRNA upstream 122672 14172076 ~ 14179774 (-) False XLOC_036290
TCONS_00070937 lncRNA upstream 389386 14438790 ~ 14452438 (-) True XLOC_036294
TCONS_00072012 lncRNA upstream 425365 14474769 ~ 14482295 (-) False XLOC_036296
TCONS_00072013 lncRNA upstream 428088 14477492 ~ 14478857 (-) False XLOC_036296
TCONS_00072014 lncRNA upstream 432455 14481859 ~ 14482457 (-) True XLOC_036296
TCONS_00070913 mRNA downstream 7419 13991297 ~ 13999293 (-) True XLOC_036282
TCONS_00070912 mRNA downstream 21680 13978486 ~ 13985032 (-) True XLOC_036281
TCONS_00070910 mRNA downstream 34086 13960655 ~ 13972626 (-) False XLOC_036280
TCONS_00070908 mRNA downstream 183614 13802227 ~ 13823098 (-) True XLOC_036278
TCONS_00070907 mRNA downstream 183621 13794785 ~ 13823091 (-) False XLOC_036278
TCONS_00070918 mRNA upstream 8781 14058185 ~ 14076309 (-) False XLOC_036284
TCONS_00070919 mRNA upstream 13200 14062604 ~ 14080534 (-) False XLOC_036284
TCONS_00070920 mRNA upstream 13256 14062660 ~ 14067517 (-) True XLOC_036284
TCONS_00070921 mRNA upstream 36490 14085894 ~ 14091886 (-) True XLOC_036285
TCONS_00070923 mRNA upstream 46763 14096167 ~ 14104317 (-) True XLOC_036287
TCONS_00070909 other downstream 128867 13877728 ~ 13877845 (-) True XLOC_036279
TCONS_00070885 other downstream 767620 13238973 ~ 13239092 (-) True XLOC_036261
TCONS_00070876 other downstream 993885 12998252 ~ 13012827 (-) False XLOC_036256
TCONS_00070870 other downstream 1337621 12521352 ~ 12669091 (-) True XLOC_036251
TCONS_00070922 other upstream 43390 14092794 ~ 14094516 (-) True XLOC_036286
TCONS_00070936 other upstream 364949 14414353 ~ 14451783 (-) False XLOC_036294
TCONS_00070951 other upstream 1242963 15292367 ~ 15305523 (-) True XLOC_036304
TCONS_00070954 other upstream 1583328 15632732 ~ 15632847 (-) True XLOC_036307
TCONS_00070956 other upstream 1866806 15916210 ~ 15916327 (-) True XLOC_036309

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000010_06116623_06143372.mRNA True 4914 mRNA 0.50 23 CI01000010 6116524 ~ 6144062 (+)