RNA id: XM_039782274.1


Basic Information

Item Value
RNA id XM_039782274.1
length 5388
RNA type mRNA
GC content 0.51
exon number 33
gene id LOC120546968
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 22554860 ~ 22585207 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGTGATCTGTCCTACAGGTTGGACACCGACACTTTGTGGTCGGATCAGATTTTGTTGTAGCTACCTGGGAGCACACGGGGCTCACCTGGAAGTGGATCGACTTCACTCGGCTCTCAAAAGTCCACTTGGTTTCCACTTTGTTGTGTGATATTAATGAAAAAAGAGTGAGGCAGCGTACTTTGGCATCGGATAAATAATTAACCCGGCAACTCAAGCGGCAGTTTACAGAAGAGCTGACATGAGGAGCTGAGCCAAGCAGTAGCGGAGTGCCCCTCTCGCCCGCGACAGAAAGACAGGCCCACAGgtgttttttgtattgtttctGTTTCATGTCATTTGGCCTGAATACACTGCGCTGTCATCATGCTCGGAGCGGAGAGCAGACTGGAAACCCGGTTGAAGAAGCTGGAGTCCCTGATAAGGAACCCAGAGTCGGCACTAAACTTGGAAACCCTACTGgATTCCATGAACGCGCTGGCTCACGATTTGAACTATCCTGCTCTgcggaaaaacaaaaacattgaggCCTTTCTGAACCGATATGAAAAGGCAGCGAGTCAGCTGCGAGAACTGCAGGTGAAGCCTGACGACTTTGAAAAAGTGAAGTTGATCGGGAGAGGAGCCTACGGAGAAGTGAAGCTGGTCCGTCACAAGGCCTCTCGGAAGGTTTACGCCATGAAGCAGCTCAGCAAGTTTGAGATGATCAAGCGGTCAGACTCTGCCTTCTTCTGGGAGGAGAGGCACATCATGGCCTTTTCCAACAGTTCTTGGGTCGTCCAGCTGTGCTGTGCTTTCCAAGACGACCGCCACCTCTACTTGGTGATGGAGTTCATGCCTGGAGGCGACCTGGTCACGCTCACCATGAACTACGACATACCTGAGAAGTGGGCTCGCTTCTACACAGCTGAAGTAGTGCTGGCGTTGAACGCCATCCACTCCATGGGCTTCATCCATCGGGACGTCAAACCTGACAACATGCTGCTGGACCAACACGGACACCTCAAGCTGGCAGATTTCGGCACGTGCATGAAGATGGACTCGACAGGCATGGTGCACTGTGAAACTGCTGTAGGCACACCAGACTACATTTCCCCCGAGGTGCTTCAGTCTCAGGATGGTGCTGGTTACTACGGCCGGGAGTGCGACTGGTGGTCTGTAGGAGTCTTTATCTATGAGTTGCTGGTCGGTGAAACTCCCTTCTATGCTGAATCCCTGGTTGGTACTTATGGGAAGATCATGAACCACAAGAACACACTCATCTTCCCAGAGGATGTAGAGATGTCTCAGGATGCAAAAGACCTCATCTGTGCCTTTCTTACTGACAGGAAGGTTCGTCTGGGCCGCACTGGAGTGGATGAGATCAAGTGTCACCCTTTCTTTAAGAACGATCAGTGGACCTTTGACAACATCCGAGAGACTGTGGCTCCAGTTGTGCCTGAGCTGAACGGTGACATAGACACCAGTAACTTTGATGACATAGAGGATGATAAAGGAGCTGCTGAGACCTTTTCTCCACCCAAGGCCTTTGTGGGCAACCAACTACCATTCGTCGGATTCACTTACTTCAAGGAGGACCAGCTGCTGAAGGGAAATAACTGCTCTGTGGAGGATTCAGAGAGCAGTAAAGAACACTCTGAGGATAAGGATTATTGCTCGGACAGTAAGAAAGAGctgcagaaaaagCTTCATCAGCTGGAGGAGCAGGTCGACCATGAGATGCAGGCCAAAGATGAGCTGGAGCACAAGTGCAAAATTGCCACCAACCGCTTAGACAAGCTGGTCAAAGAATTAGACAAGGAGATGAGTAGCAGGCAGAAAGTCGAGGCCTCACTGAGgcagctggagagagagagagctctgcTGCAGCACCAGAGCACCGAGAACCTGCGcaaggtggagattgaaactgACAGAAAACGCAGCCTGGAGAACGAATTGAACAACCTGAGGGACCAGCTAGAGGATCTTAGAAAGAAGAACCAGAATTCCCAGATCTCCAATGAGAACAACATCCAGCTGCAGAGACAACTCGAGGAGGCCAACGCCGTGCTGCAGGCTGAGCAGGAGGCGGCAGCGCGGCTGAAGAAGAGTCAGGCAGAGGCGCAGAAACAGGCTGAGAGCCTGGAGGTCAGCCTCAGGGAGATGCAGGAAAAGTGCAGCCAGCTTGAAAACAGCAAGATGGAGCTGGAGAAGCGGCTGATGGGGCTGCAGGccgagctggaggaggagaaaagacaCCGCAACCTTGGGACAGAAACTATAACTGACCTGCAGGgACGTATCTCTGGCCTGGAAGAAGAGGTGAAAGATGTGAAGTCATCTCTCTCCAAAGTCCAGTCTGAAAAGAAGCTGCTACATGAGAAGCTCAATGACCTCGAGAAGGAGAAGAGCAACCAAGAGATTGACTTGACGTTCAAGCTGAAGTCGCTCCAACAGAGTCTGGAGCAGGAGGAAGCAGAACACAAGGCCACCAAAGCCAAGCTCGCAGATAAAAACAATATCCACCAGTCCATCGAGGAGAAGTCTGAGGCCTTAAAAAAGATGGAGTGCACCCTGCAGGAGGAGCGCAGCTTGAAGCTGCAGTTGGAGGGAAAGCTGCTGCAACAACAGAAGGACCACTCCATGCTGGACTGCGACTACAAGCAGGCGCTGCACAAACTGGAGGAGCTGCAGGCACAAAAGGAGAAAATTTCTGAAGAGgtAAAGAGCCTGAGCGTGcgtctggagcaggagatccaCAAGCGGACCATGAGCCAGAGCGATCTGAAGATGCAGAACCAGCAGGTGTCGGTGCTCCTCTCCTCAGAGAAACAGCTCAAACAGGAGCTCAACCACCTGCTGGACATGAAGCAAGTCCTGGAGAAACAGAACCAGGAGCTACGCAGGGAGAAGCAGGAGGCGGGTGGCCAGCTGAAGGAACTGAAAGACCAACTGGAGGCTGAGCAGTATTTCACAACTCTTTACAAGACGCAGATCCGTGAGCTGAAGGACGAGCGTGATGAGAGGAACAAGCTGTACAAAGAGGTGCAGCAGCGACTGGCAGAATATCAGGAGGAGAGGAGTTCCATGACAGCGCAGCTGGAAGCCAGTTTGACCAAGGCGGACTCTGAGCAGCTTGCTCGCTCCATCGCAGAGGAGCAGTACTCGGATCTGGAGAAGGAGAAGATCATGAAGGAGCTggagatcaaagacatgatGGCGAGACACAAACAGGAGCTCGGCGACAAGGAGGCCACCATCAGCTCGCTGGAAGAGTCCAACCGCACTCTGACGGTGGACGTGGCCAACCTGGCCAGCGAGAAAGAGGAGCTCAACAACCAGCTGAAAGACATGCAGCAAGAGCTCCAGaaagtgaaggaggaggagatgcaGATGAACTCGCTCAAACTGTCCTTTGAAAAGCTGCTGCAGAATGAAAGAACGCTTAAAATTCAGGCTGTCAACAAGCTGGCCGAGGTGATGAACAGGAGGGAGACGGGGCAAAGAGGCCACCGAAGCATCGACACCGAGGTGCacaggaaggagaaggagaacagGAAGCTGCAGCTGGAGCTGAGAGCGGAGAAGGAGAAGCTCAACAGCACCATCATCAAATACCAGAGAGAGCTGACTGATATGCAGGCGCTGATAGCAGAAGAGAACCAGGTGCGTCTGGAGCTTCAGATGGCGTTGGACAGCAAAGACAGTGACATCGAGCAGCTTCGTTGCCAGATCACCTCCCTCAGCGTTCACTCTCTGGACTCCACCAGCATTAGCAGTGGCAACGACTTGGACATGGGTGACGGATACCCAGTGCGCATTACTCACTCTCACACCTCAGAATCAATGTCCTTCACCTACCAGCGCACACACAAATCCGTCTGCATCGACACCCGGCCCAACCTTCACTCTGCTCACACTGTCTTCGACTCTGACTCTGAGGATGAAGAAGAATATGACGGGCAGGTGGAGCAGGGCCCCCGTCCCCTGGCCCTCACCTACGAACAGCCCCCTGAGGCTGAACCTGCAGACTCCAGGCTGGAAGGCTGGATTTCACTTCCTACCAAGAACACAAAGCGGTTTGGCTGGGACAAAAAATTCATAGTTGTGAGCAGTAAGAAGATCCTGTTCTACAACAGCGAGGTGGACCGTGAACAGGCCAACCCTTTCATGACCCTGGACATCGATAAGCTGTTTCATGTCCGACCTGTCACTCAAACTGACGTGTACCGTGCAGATGCCAAAGAAATTCCAAGGATTTTCCAGATCTTGTATGCCAATGAAGGCGAGATTAAACGTGAACAGGAGCTTGTAGTGGAGCCCGCCCCGTATGGTGACCGTCCCTCCTACATCAGCCACAAGGGCCACGAGTTCATCCTCACTCTGTACCACTTCCCCTCCAGCTGTGAAGCCTGCGCTCGGCCCCTGTGGCACGTTTTCAAGCCCCCGCCGGCCCTCGAGTGCCGCCGCTGCCACACCAAGTGCCACAAAGATCACCTGGACAGAAAGGAGGAAGTTATTGTGCCCTGCAAGGTGAACTACGACATATCCACTGCCAAAGAGCTGCTTCTGCTGACCAACTCTCAGGAGGAGCAGCAGCGCTGGGTCAGCCACCTCCTCAAACGCATCCCGAGGAAACACCCAACAATGAGTCCTCCCTCTGCGGCACAAAACAACCTTCATGAAGCAACATCGAGCTCCTCTCCGCGAGGTTCCCCGCGACCTTCGCCCAGGGCTTCGCCTCGTATGTCGGCCCATCGCGGAGCCATCAAGATCCAGCCTAGcagacagcagcagccatcAGGCAAGCCCAGTTAACCCTGGATGATCAAAGATGTGTATTTTCATCTTTGTGCATATATGGCCGCAGTCTGGATGCAGTGCCTACACTACATGTGTTATTTCTTCAGGGCAGTAGACTGAAAAAAAATGGACAGAAACTGGCTGTTGTCATAAGAACTGGGGCTGCCTTTGTCATTTTCACAAGAAAATGAGTATGAGAGCGAGACTTCATCTATAggaaaggttttttttaaaaacccgactGAAACTGCCTTATTTTATAACCatcatgacaaaaacatggacaTTTTATTCTGTCAGATGCAGTGACTCACATGGATTTGTTTGTGAGGTGTTAGTCATGTGTGAACATTTGTATATAGGCTTaagatgtctgtctgtgtattgtAACACAAAGTGTAGCTCATAGTAAATGactgttttaattttattgatATAAGTCAGCAGCACATTATACATTATATGCTTGTTTTGTAAATGAATACAGTTTTCATTGCACAAAGTAGATCCATTACGACATAAGACAGAATAATGTGAATTGAACTGAAACAATGTTTTCTTCTTTCCATTCATGACGAATTCAAATAAATTATGTAACCATGAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252644 lncRNA upstream 17145 22535659 ~ 22537716 (+) True G186506
TU252572 lncRNA upstream 253378 22300784 ~ 22301483 (+) False lin28b
TU252574 lncRNA upstream 260164 22294442 ~ 22294697 (+) True G186452
XR_005637027.1 lncRNA upstream 721079 21832948 ~ 21833782 (+) True LOC120547080
XR_005636932.1 lncRNA upstream 808307 21745581 ~ 21746554 (+) True LOC120546760
TU252735 lncRNA downstream 131763 22716970 ~ 22719893 (+) True G186578
TU252803 lncRNA downstream 214528 22799735 ~ 22800058 (+) True G186622
TU252810 lncRNA downstream 224013 22809220 ~ 22809461 (+) False kcns3b
TU252843 lncRNA downstream 261665 22846872 ~ 22847674 (+) True G186641
TU252914 lncRNA downstream 376844 22962051 ~ 22966010 (+) True si:ch211-22i13.2
XM_039782495.1 mRNA upstream 1096 22541406 ~ 22553765 (+) True LOC120547088
XM_039782497.1 mRNA upstream 1096 22541406 ~ 22553765 (+) False LOC120547088
XM_039782496.1 mRNA upstream 1096 22541406 ~ 22553765 (+) False LOC120547088
XM_039782498.1 mRNA upstream 1096 22541406 ~ 22553765 (+) False LOC120547088
XM_039781292.1 mRNA upstream 39170 22490674 ~ 22515691 (+) False LOC120546366
XM_039782886.1 mRNA downstream 2650 22587857 ~ 22589325 (+) True LOC120547328
XM_039782885.1 mRNA downstream 4693 22589900 ~ 22591276 (+) True LOC120547327
XM_039782335.1 mRNA downstream 25820 22611027 ~ 22621105 (+) True pdia6
XM_039782336.1 mRNA downstream 25820 22611027 ~ 22621105 (+) False pdia6
XM_039781181.1 mRNA downstream 65035 22650242 ~ 22666743 (+) True apobb.1
TU252499 other upstream 489272 21985779 ~ 22065589 (+) True G186394
TU252459 other upstream 607861 21944743 ~ 21947000 (+) True erh
TU251678 other upstream 2694656 19856735 ~ 19860205 (+) False kif25
TU251521 other upstream 2906705 19634283 ~ 19648156 (+) False acp1
XR_005636890.1 other upstream 3015653 19429596 ~ 19539208 (+) False nhsl1b
XR_005636956.1 other downstream 993171 23578378 ~ 23589689 (+) True nfkbie
XR_005636955.1 other downstream 993171 23578378 ~ 23588514 (+) False nfkbie
TU253325 other downstream 1494396 24079603 ~ 24083104 (+) True G186975
TU253479 other downstream 1921706 24506913 ~ 24507813 (+) True G187094
TU253601 other downstream 2418812 25004019 ~ 25009407 (+) False lama2

Expression Profile