RNA id: XM_039782279.1


Basic Information

Item Value
RNA id XM_039782279.1
length 3991
RNA type mRNA
GC content 0.45
exon number 3
gene id trib2
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 13819672 ~ 13827042 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGAGCAGAAGCCCCCCTCTGTCAAGCAGGCTGCTCTCTCGCTCTGTACAGGCGcagtgtgtgaagtgtgtgcaGCGCGGCTGGCCTCCCTCCGCACTGAATGGACTAGATTCCCAGCCACGTAAGAAGTACAGCGGCACCACGGGAGAGAGGATGTCCTGCTGAATCAAGGGATAGGCCTGGGAAATTCGGCCGGCCGTCCCTTCCTTCCTTACAGCAGCTTACAGCAGCAGACATACAAAACAGACGACACTTTTCTTCCATTGGACTAGACCAAGAGAACGAGAGAGGACGTCGACTCCCGCACACAaagagctaacgttacagcagttttttttcttccggaTGGGGTTCTCTCCTTCTGTGGTACATGACAATCGCCGTGCATGGATATGATCCTGGGGAACAAGGCCGTGCACTGACCTGATACTCGTTAGCAAAGGAAGCTAACTAGTTAGCTCTGCACCTGCTAGCCATCATAATTTCGGCTATATTTAGCTTGCAGAACTtgctttatatatattttttgcttgTGCATTTTTTCTGTGCCTGCGAACTGTATTTAACAAATTGTTTCCGTTTTATGAAACGTGCCATACCGTTAACCGGCAAGATAAGCTAGCAAACAAGCTGCGGTTTAACTTCACGTTAGCACCGTTCATTCATTGTAAAAGCTGACTTTTGGTAGTCTTTGTTACAGTGTTGTCGTGCCTGCTCGCACTGCTAACGTTATTGAATTGCAGCAGGTCTGTGCAAAGGGTTTGTAGTCGGCTTGGGGCAGTAATTTAGTCATTTTCGCTTGTCCTTATCTTTTGAATGGAAAACAAAGGGAGCAAATGACCAGTTGAACTCtgcaaaaaaaaccacaaaaaaaacattgttgtaTGAAAAGCAACGAGCCGCTTTGCCTGTTGATAGTCTGCCACATTCTGCAGCAGTAAGGTGCAGTTGAATCAATTAttcttctttttaatttttttaattttttttttttacttgagatTTCCTAAAGTATCGGACGATTTGTGATATTGCACTGAGTTTACAACAAAGTGGTGCCTAATCGAGGACGAGAAGAACGAGGAGGAAGGCCCCCGATTTTGTGGAGTTATCACACTTATTCCTCATGAACATACAGAGGTCAAATCCAATTAACATTTCACGTTATGGGAGATCGCGGCACAAATCGCACGATTTCGAAGAATTATCTTGTTTAAGGACTACAGAGTCGCACCAGAGTTTCAGTCCCAACCTCGGGTCCCCCAGCCCGCCGGAGACCCCGGACTCCTCGCACTGTATCTCCCGCATCGGGGACTACCTTTTGTTGGAGCCACTGGAGGGAGACCACGTTTTCAGAGCCGCCCACCTGCACAGCGGGGAAGAGCTCGTATGTAAGGTTTTTGACATTGGCCGATACCAGGAGTCACTGGCGGCCTACTTTGCCCTGGGCCAGCACCAGCATATTAACCAAATCCTGGAGATCTTGCTCGGGGAGACTCGAGCCTATGTGTTCTTTGAGAGAAGCTATGGCGACATGCACTCTTTTGTCCGCACCTGCAAGAAGTTGCGGGAGGACGAAGCTGCCAGACTCTTCCATCAGATAGCCTCGGCTGTGGCACATTGCCACGACAACGGACTGGTCCTCCGTGATCTCAAACTGAGGAAGTTTGTCTTCAAGAATGAGGACCGAAGCCTCGTGAAGCTGGAGAGCCTCGAGGACACTTATATCCTGGACGGTCATGATGACTCCCTGTCAGACAAACATGGCTGCCCAGCCTATGTCAGTCCTGAGATCCTCAATGCCAATGGCAGCTATTCGGGGAAGGCCGCCGATGTCTGGAGTCTGGGCGTCATGCTTTACACTATCCTCGTGGGGCGCTACCCTTTCCACGACGTTGAGCCCGGCTCTCTGTTCAGCAAAATCCGCAGGGGCCACTTCAACATCCCGGAGACGCTCACACCCAAGGCCAAGTGCCTGATCCGCTCCATCCTCCGCCGGGAACCCGCCGAGCGCCTCACCTCTCGGGAGATTCTGGAGCACCCCTGGTTTGCCTCCTCCGGAGCACTAGGGGGCCCCGCAGCGCACggcagaggagaaagagagcaggAGCAGCTGGTGCCTGAGGTGAACATGGAAGAGGAGCTGGAGCAGTTCTTCCGCTGAGCAAACGCCAAGCACAAACGGACGACTCCGCCGCGGTCGGCTCGCCACGCTCACAGGCGGAGCCAAAAACAGTAGTTTAGAGATTAATAGGTGAACATTTGTCACTCATAATAAAGGTGTTTCCATTCTGTTTCCTTTTCCACCATTTCATGGAAAACCTTGAGCCTGGCATGACAAATGGCATCTATACAGTACGTCACCTGGCGATGCACCTCCCGCTCGGGGACATTGCCGCCAGACATGCAAGTTGCAAACAATGTAGCaaatgttctttttattttaattttttggtaTGGTTTAATGTGGCACTAATAAAAGTAGACACATTCACCATTTTTGACACTATGGAAAGCATGAAGGGACATAAGAACACAGGAAACCAAGGAGAATAATTCAAAATGAACTGACAAAAGTGCAAcaccacattttatttttttgtttttacagatttttttaagttttttttttttgtttttttgttttgttttttgtcatagCTTTAGGTGGTACCAATTTAAACCACAGACCCAGGGTCAGGAGTCACAACCCCAAGTTATATTGTTTAACATATACCAGGTGAATACCCCTGACCTGGGACCATTGGTTAATAAATGGAGCAGCTTAGGCTGTTTGTTATCATCATCCTCAACGTTGTCTTTGTTTAAGTTTAGTTCTTTCGTATGTCTGTTTGCCATTATTGATAATTGTGACGTAGTCGCTTAACTCCTTGACGgccttgttttcattttgtatgtttttgccACTTCGGTCTCTTAAGCCTTTACCACACTTTCATTCACCACCacacttttatttttcagtaacattactttcagtcatttatttgttttttaagctATTCCACTCTGTTGTTACTGCTGCTTTTTATATCACTCCCTAAACCTCAATCTTAAAACAGCTTTGTCTCTGTAAGCCTCCAAACATGGCATCATGCACTTGATGTGTTGGGTGAATGGACGATTCCACCTCTTTAAAATTAGCTTCCTATTATTTAAATTCATTCTTCAGTTGTAGGATCGAGAAcgtaacatttatttaaattgtaacagctatatatatatatatattatatataaataaatatatatatttaaaattacaTTGCAGGGTTTTTCTTTATTCAGAGATTCCTTTTTCATGTATGATGTAGGCAATATCTTGACACAGGACAGACACAAAGAGGAAAATATCTGTCTGAAGTTTTTGGAATACACTATCTTCTGTGCCAGTATTCCGGTGCCCCGACGGCCCATGCCACCCGGTCTCCctcatttctttttcaaaacttgATATGAGATATTCAGTGATAGTATTGCTATGACATGTCCACTCCAGGACCCCATGTTAGTTTTTCTACTGCCTGCGTAGGTTCTGTGAAATGGTCATGCTCGGAATGGGTACCAGTGGACATGTTTTGTCGTATCTCAATGTTACttgaatttgtgtttttatctaGTCATTGGCATGTGCCCCATGAATGCTATAGCCTGCCTAGCAGGGGGGGAGGGTTGAGGGGAGGAGGGTGCTTGTTTTTTAAGAAAagttaaaaacatgaaaattcTCAATTTGCTACTTTTCTGAGTTGCttttcaataataaaaaaaaacaaccattgcttttattgtttttgtagaCTGAGCTACCTTTTATTTAAGTTGGTGCTGATTTGGTGCTAATGTTTAGTCCTTTTTGTTTCACAGAGGGGGGTGGTGCATGGTGGGATATCTGCCTCAGATGTTCTGATTGTATCGTAACAGATTCTGGTGTTTTGTCCAAATTTATTCAGTAAATAAATTGTGAACTGCTA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function

KEGG:

id description
K08814 TRIB1_2; tribbles homolog 1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005636829.1 lncRNA downstream 421097 13339183 ~ 13398575 (-) True LOC120546199
XR_005636830.1 lncRNA downstream 421097 13351138 ~ 13398575 (-) False LOC120546199
TU249249 lncRNA downstream 500742 13318488 ~ 13318930 (-) True G184049
TU249235 lncRNA downstream 561710 13255986 ~ 13257962 (-) False runx2b
TU249225 lncRNA downstream 569236 13249591 ~ 13250436 (-) True G184026
TU249399 lncRNA upstream 15230 13842272 ~ 13842477 (-) True G184162
TU249445 lncRNA upstream 291980 14119022 ~ 14141806 (-) True G184204
TU249450 lncRNA upstream 360386 14187428 ~ 14231705 (-) True G184208
TU249466 lncRNA upstream 395933 14222975 ~ 14225219 (-) True G184217
XR_005636876.1 lncRNA upstream 411384 14238426 ~ 14243275 (-) True LOC120546499
XM_039780958.1 mRNA downstream 17512 13579311 ~ 13802160 (-) False LOC120546185
XM_039780954.1 mRNA downstream 17512 13579311 ~ 13802160 (-) False LOC120546185
XM_039780957.1 mRNA downstream 17512 13579311 ~ 13802160 (-) True LOC120546185
XM_039780951.1 mRNA downstream 319078 13494938 ~ 13500594 (-) True ubxn2a
XM_039780952.1 mRNA downstream 319095 13494938 ~ 13500577 (-) False ubxn2a
XM_039782322.1 mRNA upstream 50190 13877232 ~ 13887170 (-) True napbb
XM_039782323.1 mRNA upstream 50190 13877232 ~ 13886995 (-) False napbb
XM_039782318.1 mRNA upstream 62298 13889340 ~ 13910132 (-) False gpcpd1
XM_039782317.1 mRNA upstream 62298 13889340 ~ 13908626 (-) True gpcpd1
XM_039782319.1 mRNA upstream 62298 13889340 ~ 13908623 (-) False gpcpd1
TU249319 other downstream 328544 13481924 ~ 13491128 (-) False mfsd2b
TU249306 other downstream 351607 13458616 ~ 13468065 (-) True fkbp1b
TU249194 other downstream 603848 13206307 ~ 13215824 (-) False hmgn3
TU249578 other upstream 645159 14472201 ~ 14498370 (-) True G184299
TU249614 other upstream 744713 14571755 ~ 14579169 (-) False naa30
TU250064 other upstream 1961872 15788914 ~ 15791558 (-) False si:dkey-177p2.18
XR_005636881.1 other upstream 2663608 16490650 ~ 16517872 (-) False snap91b
XR_005637006.1 other upstream 3002754 16829796 ~ 16835983 (-) False gpatch2

Expression Profile