RNA id: XM_039782288.1


Basic Information

Item Value
RNA id XM_039782288.1
length 3721
RNA type mRNA
GC content 0.54
exon number 12
gene id LOC120546974
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 24530331 ~ 24630590 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TACAGTACGTGTAACGTTATCGGTTTAATTTAATATCAATACAAGTAGGCTATACTGTAGGTGCATACTTTGTAAAAATGGCGTCTGATATTGGCTGCCTTCATAAGCGGAGCTCTGCTATCAGTGACCACAACAACATCATTGCATTATAATTCATCTCCAGAGAATGAAGTCTGCCGCTGCATCAGGACTGGCGTCGGACAAGAAAACACATACAAGCCGCCGTCATCATGGGAAACTACGGCCGCTCTGTCGCAGATGTTTATAACGAACAACGCAATGAACATTTTCACGGCATCCAGGAGACATGATCGCCTTTCACTTATTAACCGCCCGTGTACTATCGAAGAAGAAGTGACCTTCTCTGAGGAGGAAGATGTCAGCGCTGAAAAAGACCAGACATTTTCACCTTGGTCCCCGTCTCGAAAGTTCAATGAAGGCAGACGCCTCCCTCCAGCCAGGAACATGAAGGGCTTATCGGGCAGCCGTTCCCAGCACCAGATCCCTTTACCCTATGGCTTGGACTATGACCCTCACGTTCATGACCTCCACGCTCACCATGGCTCTGACTCCCGCCACTCGTCCTACCTGCTCAGCCCCACAGAGAGCTGCCCCATGGACTTCCACCACCGCTACTCACCGCGCAGCTCGATCCACTCTGACTGCATGATGATGTCCCCTGTCATGATGCCCCCAGTTGCTGTGTCTGAACACATCTCCAGCAGCACATTCCCCAGAATGCACTACAGCTCACAGTATTGTGACCCAGCCACACGGGACGACTGCGCTACCATCACAGCCTCTGCCACCTCCCCAGCTGTCGCTGCTGCAGCGGCAGCGGCAGCGGCATCTTCCCATCTCGTCGGCACCAAGAGCAACCGCCTTCCTGCTAACCTACTAGACCAGTTTGAGAAACAAGTGCCACTACACCGCGATGGCTTCCACACGTTACAGTACCAGCGCACTTCCACCACCACTGAGCAACGCAGCGAGAGTCCTGGCCGCATCAGACACCTTGTTCATTCTGTCCAGAAGCTCTTCACCAAGTCCCACTCCCTGGAGGGATCATCCAAGATGAATGGCACAAAAGGTGATATGATGGGAGGTGGAGGTTATCACCATCATGGTCACCACTCCACCAAACATGGTAGCAAGAGGAGCAAGAGCAAAGAACGCAAGCACCGCTCTGGCGGCTGGTGGAGCTCTGACGACAACCTGGATAGTGACAGCACCTACCGCACACCCAGTGTCATGTCGCGGCACCATGGGGAACATGTCAGCCACTGCTACCCAGATTCCATGCACAGCCACCACTTTGGAGACCTGTCACTCAAGACCTCTAAGAGTAACAATGATGTCAAGTGCTCGGCCTGCGAGAGCATGGCCATGGCGCCCGAGGGCAAATTCACAAAGAGGAGCTCCTGGTCGACACTGACAGTCAGCCAGGCCAAGGAGGCCTATAGGAAGTCATCGCTTAATCTAGAGAAACCCATGATGCACTCGATGCACTCCGACCTCAAGCCTTCATCGCGGACATGTCACTACCTGCAGGTGCCCCAGGATGAGTGGGTTGGATACCCAGGCGAGAAGGATGAGGAGATCCCATGTCGGCGGATGCGCAGCAGTAGCTATGTCAAAGCTATGGGAGAGGTGGATGATGAAAGTGGTGACTCTGACACCAGCCCTAAGACCTCCCCACAGAAGGCCATTCCGTCTGATGCTCTGGTCCTCAAATCAGCCATGCAGAGACCCCATATAGACTCCCAAAGCCAGGGCTACCACTTGCAAACCACAAGAGATATGCGACCCCACCCTAGTGTCACGCTGGACCCTGCCACCTTTCACCCCCCGCCCTTCCGCTCACGCAACCAGAGCTACATGCGCGCCGTCAGCACCCTCAGTCAGGCTAGCTGCGTCAGCCAGGGGAAGAATCAaagtgagaaagagaaaggaagaggaaaaatTAAGGACTGCTATTCCTGTTTTTGTCTCTCAGGGATTCAGTTTCGTCTCCCTACTTCCTGCAGCGTGGACCGTGCTCAGCCACCTCCAGCGGTATCATATCCTCCCAGTTACAAGAAGACTCCACCTCCTGTGCCCCCGCGCACCACCACCAAGCCTCTTATCTCTGTGACAGCCCAGAGCAGTACAGAGTCCACCCAAGATGCCTACCAGGAGGGCAGGCATCCACGGGGTGGGCTGTGGACCACGGATAGCCTTGGTCGTCCCATCTACAGCTCCATGGACAGCCTGGACAGCACCAAGGCGGTCACCATGGCCATGGAGTCAGCAGCAGGCAAGAGGCATGCATCTTTGGGCAGCCACAGCTCGGTCCAGACATGCGACAAAGCAGTGCTGGTGTCCAAGGCCGAGGAGTACCTCAAAACCCCACGTTCCTCTATCGGGATACAGGTGGAAACTGTAACAGACTCTGAGACTGAAACTAAAGGCCTTCCTCAGTTCCATTCTATAGGTATCCAGGTGGAGGATCACAAACGGCATGGGAGGTTCAAGCGCTCCAACAGTGTGACCACTGCAGTACAAGCAGACATGGAGTTGGAGGGCTTTCCCTCCATGGAGGACAAGGGCCTGCAGTTTGGTGGTGGCTTCGGTCGCCACTCTGAGCCCAGCACGCCCACGCAGTATGGGGCCATCCGTACGGTGCGCACACAAGGCCTGTTCAGTTACAGGGAGGACAACCGGCCTTCCAGTGGGCCCCCCAGCCCACAGCCTGAAACCTGGCTGGTTGAACCCAGTCTGGAGAGCGCCGAAACAGGCCGAGTGTCCCCCCTTCGCAGGGACGGCAGCTGGTTCATGCAGCTCCTTCACAATGAAACCAAGCGACTGGAGGGATGGTgcaaagagatggagagagaagcagAGGAGCATGACCTGACAGAGGAGATCCTAGGAAAAATCCGGAGTGCCGTGGGAAGTGCTCAGCTACTTATGTCTCAAAAGTTTCAGCAGTTTTACTGGCTATGTCAGCAGAATCTGGACCCTAGTGCCATGCCCAGACCCACATCTCAGGACCTGGCTGGATTCTGGGACCTCTTGCAGCTTTCCATTGATGACGTCACTGCCAAGTTTGATGAGCTGCAGCAGATCAAGAGCAACCAGTGGCAGCTGGTGGAGAGCCCAGCAAAGAAGGAGCGGAAGTGGCCACCACCTATGCCAAAGCGGCCGTCCAAGGGGCGTGGCGGTATCATGCGAGAGCGCTCTCTGGACCTTCAGGACCGCCAGCGACAGGAAGCCCGCAGACGCCTCATGGCCGCCAAACGAGCAGCTTCTTTCAGACAGAACTCAGCCACAGAGAGGGCAGACAGCATCGAGATCTACATCCCTGAAGCCCAGACACGGCTTTGAGGTTTACGGATTCATCCTTAGCTCCTCTTGTCCACCTCCACCCAATACCAGCTCGTCGCATCACATCCAGCCTGCTGTCATCTGTCACTGCTCATCCACTTTTTCATCATCTGTCGCCATTCTTTGGGTTGCCCCTACTGAAGCTACACTAGGCAAGAATTTGTTGTTGTAGTTATCAGCTTAAATGACAATGTGGCACTGCCATAGGGAAGAACGCCCCATCTATCCTGAGTGAGAAGTTAGATGAGTCAGTTGAGTCAGATGTGGATGGTTGTTTTCTCACagaaagtaataaataaaacatttaaaatgaagctcaacacaaaaataaataaataaatagacacaCCAGCGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU253454 lncRNA upstream 143163 24386956 ~ 24387168 (+) True G187074
TU253387 lncRNA upstream 295580 24211413 ~ 24234751 (+) True G187027
TU253347 lncRNA upstream 342467 24185289 ~ 24187864 (+) False extl3
TU253322 lncRNA upstream 383113 24072763 ~ 24147218 (+) True G186972
TU253548 lncRNA downstream 6135 24636725 ~ 24639484 (+) True G187158
TU253556 lncRNA downstream 25380 24655970 ~ 24656643 (+) True G187165
XR_005636936.1 lncRNA downstream 378923 25009513 ~ 25012350 (+) True LOC120546772
TU253634 lncRNA downstream 378940 25009530 ~ 25012241 (+) False LOC120546772
TU253656 lncRNA downstream 480456 25111046 ~ 25115288 (+) True G187212
XM_039782343.1 mRNA upstream 12148 24515444 ~ 24518183 (+) True grcc10
XM_039782057.1 mRNA upstream 23942 24498746 ~ 24506389 (+) True LOC120546832
XM_039781350.1 mRNA upstream 44732 24446908 ~ 24485599 (+) True LOC120546425
XM_039781804.1 mRNA upstream 94008 24419260 ~ 24436323 (+) True rars2
XM_039781351.1 mRNA downstream 179489 24810079 ~ 25009457 (+) True lama2
XM_039781642.1 mRNA downstream 607237 25237827 ~ 25261246 (+) True fntb
XM_039781653.1 mRNA downstream 651344 25281934 ~ 25294676 (+) True slc10a1
XM_039782520.1 mRNA downstream 711003 25341593 ~ 25350144 (+) False LOC120547103
XM_039782512.1 mRNA downstream 711049 25341639 ~ 25347485 (+) False LOC120547103
TU253479 other upstream 22518 24506913 ~ 24507813 (+) True G187094
TU253325 other upstream 447227 24079603 ~ 24083104 (+) True G186975
XR_005636956.1 other upstream 940642 23578378 ~ 23589689 (+) True nfkbie
XR_005636955.1 other upstream 941817 23578378 ~ 23588514 (+) False nfkbie
TU252499 other upstream 2464742 21985779 ~ 22065589 (+) True G186394
TU253601 other downstream 373429 25004019 ~ 25009407 (+) False lama2
unassigned_transcript_1083 other downstream 589278 25219868 ~ 25219940 (+) True trnat-ugu_3
TU253978 other downstream 1397470 26028060 ~ 26030400 (+) False nudt14
TU254022 other downstream 1646105 26276695 ~ 26281368 (+) False gareml
TU254081 other downstream 1815060 26445650 ~ 26452304 (+) False tfap2b

Expression Profile