RNA id: XM_039782294.1


Basic Information

Item Value
RNA id XM_039782294.1
length 3381
RNA type mRNA
GC content 0.48
exon number 13
gene id mut
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 13437070 ~ 13458215 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GACCAATTGACGGTAGCACGCTATTGGCTGACTGTCAATGTTATGAAATTTCATTGGATAGTCGAACACACGCCTTTCGCCAATCTGAAAGATCACAACAGACGCCAAGGTGATTCATGTCCGTCTGATTGAGTCAACATTAAGCATGCTGACTGCACAGAGGGCATGTGCAGCGATGGCTGCCCGGCGCCTGGTTAGAGCTTCTTTCtcctcagcacacacacaccgctctcTGATCCACACTTCCATAGCATGCAAGGACCAGGATGAGCTGCATCCAGAATGGGCCAGTCTGGCTAAGAAACAGCTGAAGGGGAAGAACCCGGAAGATCTGATCTGGCGCACGCCTGAGGGACTCAACATCAAGCCTGTGTACACCAAAGCAGACTCAGTTGACAGGCCAGATGAGTTGCCAGGAGTATTTCCCTACACTAGGGGGCCCTATCCTACCATGTACACATATAGACCTTGGACTATCAGGCAGTATGCTGGCTTTAGCACTGTGGAGGAGAGCAACAAGTTCTACAAAGATAACATTAAAGCTGGACAGCAAGGTCTTTCCGTGGCTTTTGACCTGCCGACGCACCGCGGGTATGACTCGGACAACCCCCGAGTCCACGGAGATGTCGGCATGGCTGGAGTTGCTATAGATACGGTTGAAGACATGAAGATGCTCTTTGATGGAATCCCGCTGGAGAAGATGTCCGTTTCAATGACAATGAATGGAGCAGTGATCCCTGTGTTGGCGATGTTCATTGTGACCGGAGAGGAGCAGGGCGTGTCTAAAGCCAAACTAACTGGCACCATTCAAAATGATATCTTGAAGGAGTTTATGGTACGCAACACCTACATTTTCCCCCCGGAGCCTTCCATGCACGCCATCGCAGACATCTTTGCTTATACCTCCAAGCACATGCCTAAGTTCAACTCCATATCCATCAGTGGCTACCATCTTCAGGAAGCTGGGGCTGATGCCATCCTGGAAGTAGCCTACACCATCGCTAACGGCCTGGAGTACTGCCGCACTGGTCTTAAAGCAGGCTTAACAATCGATGAGTTTGCCCCGAGGTTGTCATTCTTCTGGGGTATTGGGATGAATTTCTACATGGAAATTGCCAAGCTGAGGGCAGGCAGGAGGTTGTGGGCCACGCTCATTAAAGAGAACTTCCAGCCTAAGAATACCAAGTCTCTGCTCCTCCGCACACACTGCCAGACTTCAGGCTGGTCTCTAACAGAACAAGATCCGTACAACAACGTGGTCCGTACAGTGATCGAGGCCATGGCGGCCGTGTTCGGGGGGACCCAGTCTCTCCACACCAACTCGTTCGATGAAGCTCTGGGCTTGCCCACAGTGAAGAGCGCTCGCATTGCCAGGAACACCCAGATCATCATCCAGGAAGAGTCGGGCATCCCCAAAGTAGCAGATCCCTGGGGGGGCTCGCACATGATGGAGGCTCTCACGGATGACGTCTATAACAAAGCTTTGAAGTTCATTAACGAAATTGAAGAGCTGGGAGGCATGGCCAGAGCTGTGGCAGAGGGCATTCCAAAACTTCGTATTGAGGAATGTGCTGCTCGCAGACAGGCCCGCATTGACTCAGGATCAGAAGTCATTGTCGGGGTGAACAAGTACCGCCTGGGAAAAGAGGAGACTGTGGAGGTGTTGGCAATAGATAACACTGTTGTACGTCAGAAACAGATTGACAAACTGAAGAAGGTGAGGGAAAGTCGTGACCCAGAGGCAGCGAAGAAGTGCCTGGCAGCCATTGAGGAGTGCGCCCGAACCGAGGAAGGCAACCTTTTAGCCCTGGCTGTGGAGGCAGCACGAGCCAGatgttCGGTCGGTGAAATAACTGATGCTATGAAGAAAGTGTTTGGTGAACACAAGGCCAGTACCAGGATGGTGAGCGGTGCCTACCGAAGCGAGTATGGGGAGCATGAAGAGATCGCCGGGGCCCACAATAGAGTTGCAGATTTTAAGAAGCACGAGGGCAGGAACCCTCGACTGCTGGTGGCAAAGATGGGGCAGGATGGTCACGACAGGGGTGCCAAAGTCATCGCCACAGGGTTTGCTGACCTGGGCTTTGATGTGGACATCGGACCACTGTTTCAGACTCCCCTTGAGGTAGCCCAGCAGGCGGTCGACGCAGACGTACACTGTGTCGGGGTCAGCACGCTCGCCGCAGGACACAAGACCCTGGTCCCAGAGCTCCTCAAGGAACTACGGAAGCTCAACAGGCCAGATATCCTGGTCATCTGTGGCGGCGTCATCCCACCACAGGACTACGAGTTCTTGTATCAGAGCGGCGTGTCCGCCATCTTCGGCCCAGGAACCAGAATCCCACAAGCTGCTGTGGAGGTTATTGACAACATTGAAAGGAGCCTGGAAAAAATCCGGCAGGTCATGTGAAACTCAAACTACAACTTGAAGAACTGTCTATTTATGTTGTATCAACAACAAACGCCACAAGTGGGAACCCACACTTCTGTATAGAATCAGGTCGCAAAAGATTGTAAAAAGCTAAAATGTCCTTTCCCACCGTGAGAACACAGCATGTTCAGCAGTCAAAATGATAAAAAACCTGTTGGACAGGCATGGTTGTTATGAAATTAGATTTTTAGTATCCGCACAGTTTGCCGTTTTCAGTCCTGTAActtcacaaagaaaaaaagtcaacatGTACCCAACAGTATCTAGTTTTGTTAATTCAATATATCTAAAGAAATCCTCTCCCACATAACTTCTTCAGTCGGATAAATGGTGATTTCACCCTAACAGCATGCCTGTGTGTGAATTGCAGTGGTTACAGCATTATTAATATCCTGTAAATATCCTAGAAATGGTCAATACTATAAAGTTAACACAAATGAAACTATATTAAGACTTTTACccatacttaaaaaaacaatacatcaTACACTACATTTCAACAGATTAGGATATGTTAAACATAATACAGTACCATGTGAAACATTGGCTTGAGATGAGCAGAGCATCTTTTTTGGCATCCACGAATAAACCTTACATCACAGCACTATAAACCTACTTGAAAtgttatgcttttattgtgaaatgtgTGTTTAATTTTCAATTACGTAGCAGGATGTCATTAGTGCTAGTGCGGTGCAAATGGAGGGGTAGAAATTCTAATCAAAAACCTCTTATTACCCCCCTGGGTTTTATGTTGATGGATATTATCATCTTGAAAGTGGCCTTCTGTTGTCTTGATCTCTTGCATCTTGTTTAATTCTTGCTTCAGTTCAAAGATAAAAACACATGTGATCACAATTTATTTGGAAATAATATTTTTCTACTTGTGATTCTTAATCAGATTGAGCGCTATTTGGTCTAAATAAATTACATGAACTTTGGAAATGTGA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0004494 methylmalonyl-CoA mutase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0031419 cobalamin binding molecular_function

KEGG:

id description
K01847 MUT; methylmalonyl-CoA mutase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005636829.1 lncRNA downstream 38495 13339183 ~ 13398575 (-) True LOC120546199
XR_005636830.1 lncRNA downstream 38495 13351138 ~ 13398575 (-) False LOC120546199
TU249249 lncRNA downstream 118140 13318488 ~ 13318930 (-) True G184049
TU249235 lncRNA downstream 179108 13255986 ~ 13257962 (-) False runx2b
TU249225 lncRNA downstream 186634 13249591 ~ 13250436 (-) True G184026
TU249399 lncRNA upstream 384057 13842272 ~ 13842477 (-) True G184162
TU249445 lncRNA upstream 660807 14119022 ~ 14141806 (-) True G184204
TU249450 lncRNA upstream 729213 14187428 ~ 14231705 (-) True G184208
TU249466 lncRNA upstream 764760 14222975 ~ 14225219 (-) True G184217
XR_005636876.1 lncRNA upstream 780211 14238426 ~ 14243275 (-) True LOC120546499
XM_039782558.1 mRNA downstream 133286 13255885 ~ 13303784 (-) False runx2b
XM_039782555.1 mRNA downstream 133290 13255885 ~ 13303780 (-) False runx2b
XM_039782556.1 mRNA downstream 133290 13255885 ~ 13303780 (-) True runx2b
XM_039782557.1 mRNA downstream 150953 13255885 ~ 13286117 (-) False runx2b
XM_039782223.1 mRNA downstream 221170 13206330 ~ 13215900 (-) False hmgn3
XM_039781819.1 mRNA upstream 387 13458602 ~ 13468035 (-) False fkbp1b
XM_039781820.1 mRNA upstream 15468 13473683 ~ 13491143 (-) True mfsd2b
XM_039780951.1 mRNA upstream 36723 13494938 ~ 13500594 (-) True ubxn2a
XM_039780952.1 mRNA upstream 36723 13494938 ~ 13500577 (-) False ubxn2a
XM_039780958.1 mRNA upstream 121096 13579311 ~ 13802160 (-) False LOC120546185
TU249198 other downstream 221246 13194077 ~ 13215824 (-) False hmgn3
TU249194 other downstream 221246 13206307 ~ 13215824 (-) False hmgn3
TU249195 other downstream 221246 13206307 ~ 13215824 (-) False hmgn3
TU249197 other downstream 221246 13206307 ~ 13215824 (-) False hmgn3
TU249125 other downstream 429202 12960498 ~ 13007868 (-) True LOC120547209
TU249306 other upstream 401 13458616 ~ 13468065 (-) True fkbp1b
TU249319 other upstream 23709 13481924 ~ 13491128 (-) False mfsd2b
TU249578 other upstream 1013986 14472201 ~ 14498370 (-) True G184299
TU249614 other upstream 1113540 14571755 ~ 14579169 (-) False naa30
TU250064 other upstream 2330699 15788914 ~ 15791558 (-) False si:dkey-177p2.18

Expression Profile