RNA id: XM_039782295.1


Basic Information

Item Value
RNA id XM_039782295.1
length 3981
RNA type mRNA
GC content 0.48
exon number 10
gene id gpatch2
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 16825652 ~ 16835983 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gcagcataATACCATACTGTCCTCCTCTTGTCGCATATTgatccagctagctagctgatcgTTAGCTTTTGTGTCAGAatggtgtctgtggtgtgtaAATGTTTGTCCGTAGTTTCTGGCTAAAGGTATCTGGCATTTGGGGGCTTTAATGTTTGGTGCAGCTAATCTAAAAACCATCGGCAAAGCGGGAACCGGCTGGCACTTTCACCGGACGATGGACGAGCTGGTCCATGACCTGGTGTCAGCACTGGAGGAGAGCTCAGAGCAAGCAGCGCGTGGTGGTTTTGGTGATGGAGGAGACCACGCACTGGCCGTGGGCTGCCTGCTGAAGAGGCAGGCTCGGAAGCGGAGGGGCAGAAAACGACGCTCGGACAATCCACACCCGCCTTGGGAGACAGGCCACCTCAGTGAGGGCTCAGAGTCTAGTGTGGAAGAACACAAGGACTACCGTGCCAGTACAGGGGGTGTCTCTGCTGCCAACAGCCATGCCCGTGACAACAGTGACTCGGATGAACAACTTGGCCCCAAACGGCGCACCCTCCTAACAGCTGACACAGGACGAAGCAAGCGGCCGCTTTGGCCAGACGACTTGGGTGTCCTGGGATCCGCAGAGGGAACTCGCAGCCTTAGACGAAGACGTAAGGTCAAACGTATGGCTGTAGACCCACCTGTAGAACCAGAACCCCCCTCCTGCACCATGTTAGGGCCCCCACCTGTCCCGAAAGCCCGTGCTAGTGCCAGGCCGCATAGACTGGGTGCTAGTGAGGGCAGGGTTGCCATGGAACTCTGTGGAGGTGGACTGATAGGGCCAGGGGGAGGAAAGAACAGGGTGAAGAAGAGGAAACTGGCTCCCCACAGGCTGGGCATGGAGGCTACAGATGAAGGGGTAGTGGTGGAGAGTGAGGACCACATTTCTTCTCCAACGGAAGGGTCCAAGGACAAGATGGAGTTGGAGGAGCAGAAGGGCTCGGATGAGGACATGAGTGACAGGTGTGAGACCAGCAGTGTCAGTAACAGCAGTGACGGAGGCCTCTACACCAACGATGAGGGGAGGCAAGCCGATGACGAGCAGAGCGACTGGTTCTATGAGGGGGAGCCAGGCGCCGCCCCAGCACCCGGAGGTGCATGTGCGATAGCAGGAGTGGTTCCTTGGTGGGAGAGGGACACGGGGTCAGAGGAGCTGGACCTAGTTGATCCTGTCTTCAACAGCATCATCACTGGATCCTTCCCCCTCATGAGCCCTGGAGCACAGAGAGTGTTCCAGGCCCGACTGAGTCGTCTCCATGGAAACCAGCAGGCGTCTCAGGCAGGCAGTTCCGGCCAAGGCTTCAACGACAGACTGGGCAGACAAACCCAGGACTCCCATGAGCCTTGGTTTAGCTCGGGCTCGAGGAGAGAACACGGACAGCCACTTCAGTTGCATTGGGACCCACGGTCGGACAGAGGGCATCGGAGAAGCTGTTCAGTAAAAACAGCCAGCAGACAGACCAGCGGGCACCTCGGCTCTCTGTGTACAGGGGATGTCAAGCGGAGGCGAAAAGCTGCCCCCCTCGGTTCCACCGCCCCCTCAGGAGTGGTCGGGGAGAATGCGCCTCCCATCCCTGACACCAACATGGGGAGCCGCATATTACAGAGCATGGGCTGGAACCCGGGAATGGGCCTGGGTCCAGAGGGCAGGGGCATCACCGAGCCAGTCCGGGCCACACAGAGACCCAAAGGCACGGGTCTGGGTTTCAACTGAACACCAACCGGATTTCTGAATCCTGAACCTGAAGTCATGCTGGGACAAGACTCCCCAAGAGATAGGAGTGAGGGAGATGCTGCTGAGGGCAAtgaaagatacaaaaaaaacaaaaaaaaaacggtcaAGAATAATCCAGGCATCTGAGTCATAAGAAGGGAAGGAATGAGGCTTGTCCTAACAATAGAAACTTTCCCATATTGGGGAAACGGCGAGAAccctgggacacacacacacacacacacacacacacacacacacacacacacacacacgaatgaTGCGGAAGTGAATGAAACTGAGCAGAAGAAAAGACTGTTCTCTCGAGAAATGTTGGCGAAAGTAAGACATTGGTGCCTCATTGATAGTTTGTAAAGCTGGCATGCCGCCTCAGCCCTGTTACCTCAGACGCCATTGTAATTGGCTTGAAAACTGGGGAAATGACGACCAAATACTGAGCCAATGAATGAGTTTGTTTTCAATCAGCGGTATCGGTTAGTGAATTAACGATAAATGGTTTTGTCCGGTATTGCACAAGAACTTAGGAATCAAAGACTATTTTAGTAGGCCATACCTCAAGATTCATTTTAGGTTCTTCTTTAAGGTAACGAAGGTAAGGGTACACTGTGCGGATGTGTGTTGGAATCTCTAGATTTTTTCCCCATTTACTTATTGTTCATTTATTGGAAGAAGTCATCTCATCAGAATGTTTTTATCTatcaaaaaagataaaaaaaaaaacaactgaatttTCCCTTCAATTAGCACCAcgatgtatgcatgtctgtggcTGCTGCAGGTTCTGCTGATGTGTACTAAGAAAAAACACGTTGGGACGTGAAGTAAAGTCTTGCGATGACTTGCTTGACTGTCTTATTTCATGCAATTTCTTTAGGTATTTTATCCTGGCACATGTTTGCACCGCAGACAGCAGTATTTAGCCTACCACAGCCATGCTCAATGACTTTACATACAGTACGTGACAAAATGGCTGTACGATTGTCAGCTTACAAGCATTTTAGTGTCTCCATACAGGTTTGGAGATTCCagtgaatgagagagagaattaATAAATGTAGCTCTTTTCAATGTCTTTAGAAGtttaagaaaatgaaatattgcTGTCATAATACACATGGAAAGGCCCTACATACCTTTTGtttcacaggtgttttcacttaaaatgctcattatgctcatttccagGGTAATACTTGTATTTAGAGgctatatcagaataggtttacatggtttaattttcaaaactttttgttgtactgcacattgctgcagctcctcttttcaccctgtgtgttgagctctcagttttagctacagagtgagacctctcacttctcttacatctttgttgggagtcgcacatgcgcagtagctacgTAAGGACCGCTAgctaatcagaagcagagtatgagggcgcgccacgctagcagctaggcgagcattttAACGTGTGTTACAACGTGCCTCACGTtcatcacagaagtaaaggctggactacaacagagctgtttggagcagtttgtgaacagtgttttctgttggagatggtaagaccctttggggtggactttgggctttttcactttggaagcctattttatgcacaaaaaaagatatattacacaataaaggaaaggggaaacaccaaaaagcataatatgagcactttaattagCCTGATTGGAGCTTTTCTTAGCATTGTGTGAATATAGACTGAAGTCTAATGAGAcagaagtgaaaacacctgtgtgacTGGGCAGGTCCTTAACTAAAACAAAAGAGGAAGAGCTACTTACATTACAATTTAGTTTTAGACCCATTGTCATTTACTTAACTGTGATATTGTTTCTTGTGTTTATTCAGAGTATGTTTGCTAATCTAGCTTACCTGCAACCATAGATTGTCCTGAATGCAgatttgaaattattttaagtGCAGGTAGAGAGATTAAGGTCTAGAATAACGAATGACATTATGAATTAAAAAATGTGCAGGAAgttgtactgtaaatgtaacaATATTTGTTTCCTCTTACTTTGTTGTTGTAACCATTGAGCACCGGATGGCTGGTCTTCTACCCTATTAGGCCTGTTCATAGAAGTGTGAGATGTCAGTGACACAACCAAGTATTAAACTCAAAGACTGCCTAAACTATGCGGTGGTTATTGAACTATTAGGTTCATCCCACCCCTCTAGTTCATCAGGTGGTTTAAACCAAA

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K17569 GPATCH2; G patch domain-containing protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250410 lncRNA downstream 1055 16824296 ~ 16824597 (-) True G184903
TU250404 lncRNA downstream 51381 16772721 ~ 16774271 (-) True G184897
TU250380 lncRNA downstream 62964 16709755 ~ 16762688 (-) True G184877
XR_005637030.1 lncRNA downstream 109335 16711035 ~ 16716317 (-) True LOC120547094
TU250369 lncRNA downstream 150145 16673588 ~ 16675507 (-) True G184869
XR_005637020.1 lncRNA upstream 97711 16933693 ~ 16936181 (-) False LOC120547043
XR_005637021.1 lncRNA upstream 97711 16933693 ~ 16935582 (-) False LOC120547043
TU250501 lncRNA upstream 97711 16933693 ~ 16935625 (-) True LOC120547043
TU250524 lncRNA upstream 333707 17169689 ~ 17170262 (-) True G184989
TU250586 lncRNA upstream 430377 17266359 ~ 17269604 (-) True LOC120547341
XM_039782386.1 mRNA downstream 2587 16792438 ~ 16823065 (-) False LOC120547035
XM_039782385.1 mRNA downstream 11894 16792438 ~ 16813758 (-) True LOC120547035
XM_039781335.1 mRNA downstream 40751 16783049 ~ 16784901 (-) True si:ch211-57i17.5
XM_039781958.1 mRNA downstream 97215 16721239 ~ 16728437 (-) False naga
XM_039782403.1 mRNA upstream 44813 16880795 ~ 16919678 (-) False itsn2a
XM_039782405.1 mRNA upstream 44813 16880795 ~ 16919678 (-) False itsn2a
XM_039782404.1 mRNA upstream 44813 16880795 ~ 16919678 (-) False itsn2a
XM_039782399.1 mRNA upstream 44813 16880795 ~ 16919678 (-) False itsn2a
XM_039782397.1 mRNA upstream 44813 16880795 ~ 16919678 (-) False itsn2a
XR_005636881.1 other downstream 307780 16490650 ~ 16517872 (-) False snap91b
TU250064 other downstream 1034094 15788914 ~ 15791558 (-) False si:dkey-177p2.18
TU249614 other downstream 2246483 14571755 ~ 14579169 (-) False naa30
TU249578 other downstream 2327282 14472201 ~ 14498370 (-) True G184299
TU249319 other downstream 3334524 13481924 ~ 13491128 (-) False mfsd2b
XR_005637059.1 other upstream 925974 17761956 ~ 17762038 (-) True LOC120547356
XR_005637061.1 other upstream 926416 17762398 ~ 17762482 (-) True LOC120547359
XR_005637056.1 other upstream 926751 17762733 ~ 17762808 (-) True LOC120547353
TU250856 other upstream 928823 17764805 ~ 17766640 (-) False zgc:153284
TU250853 other upstream 928940 17764922 ~ 17766640 (-) False zgc:153284