RNA id: XM_039782303.1


Basic Information

Item Value
RNA id XM_039782303.1
length 6804
RNA type mRNA
GC content 0.48
exon number 10
gene id casp8ap2
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 3661553 ~ 3678597 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACTGCTGTTAAAATCCTGTCCACATGTGAGTGAAGCACAAGTCCTTCCGGGTCGGAGGTTTGACTATTGGGCGTCGCACTGTGATGACGCGTCGGACAGCGTCGCGAGCACAGTGTAACTCTCTCCGCGAGTGGAACAGCTGTCGCTCGAGCCTGATGTGCTGCTATTTCCCGCTTTGGTTCCAGCGGGAAGCCCTGGGCACAACCACCCCGCTGCTCTCCGGTAGTCCTACACGGGTCCACATAGGGGGTCCACATAGGGGGTCCACTGCTCTTTAACACGCTTTCTGCGACAACACAGCCACGAAGAAGAATAGTGACAGACCGCGGGAAAATTATGTCGTTACTTCCTGTGCAATGAAGTCTTGGCGCGACAGTCCAGTTGTAAACAACAGGAGGACACCCGACAACACGCAGACCCGAACTCTGTAAGAAAACGAGCCACAGAGATACTAGAAGAATGGAGAACATTGACACCAACAATGCTTCTGGTCTCTTTGTACCTGATGTCAGTGAAGATTCTGTTGATATCTATGAAGGCCTGGATATCGGTTTTAGCAGCGATGCAGAGAAGTCATCTCCAAAGGCTTCCCAGCTTAAGGACTCTATGGATCTTTATGAAGAACTTGTCACAGAGGAACAGCAGAGCAGAGAGTCATCATACTTAGAGttGAAATCCAGATTCCAGGCAGCTCAAATCCAAATTAAAGAGTTGCGCAGGAGAGTGGAACAGATGGAGATCCAgaATACAGGGTTGAACACGGAGAACTACCATCTCAAAAAGAACATCTCTGCACTATTACAAACAGCTCGACAGGAGGTGACTCGAAAAGATGCTGAGATTCAGAGGTTGATCCAACAATCACACAAAGGTTTCCACCATCTCCAATCTCACATTAATAATCGTCGGGATCCAAGTTCCTTGAGTCGGACCTCGGCAGGCAGCTCCATGAGTAGgccacctcctccacctccccccAGTCTTCCGCTGCCTCCTCCACCATCCAGCCCACCTCCACCTCGACCGGCTTCACCTCCCAGAGAGGATCCTCCTCCAGCCTCCAAGAGAGAAAGCAATAGTTCCACCTCTCAGCCCAGTGCATCCAGCAGGAAATCCAGCAGCAGTTCATCAACCCGACACAGTGAGCCGGGCAAACACAAGTCCACGCACAGAGAGGAAAAATGTGAACCTACAGATAGGAGACATAGAAGTGGTTCAGATCCCGACAGGTCTCACAAAACAGACAAGGACACAGGACGAAGACATGACTCCAGATCATGTAAAAGCAGGAACTACCTAAATGTTGAGGGGCGCCACAGATCAGACGAGTCGAGAACCCCTCCGCCAGAGATTCCACATGCTGCCGTTTCCTCTGATGACAAGAAAGGGAGAAGTCAAGAGCGGAGACAGAATGCAGCCAAAATGTCCACACCAGACTCTGAACGCAGTGCAGCTCACAGCTCTAAACAGCGCCACAGCCGAGATCATAGAAAAATCCAGACTAGTGACAAACCTGTCGGGAGGAAAAAGGACCGCAAAGATTCCTCTTCACATCACCGCACTGAGCGCTGCAGTGAGTCCTCCAATGAGAGGGGAGGGAATAGACTGTCGAAGGATTATCAAAGGAAGGAGGATAGACGACGTGAAGAGGAAGTCAGCAGAAAGCATAAGAGGAGCACTCCGTCAGAGACCAGCAGAGAACGTGAGAAAGCCAGAGCAAAAGGATCAGACCAAGGTAGAGTGGATGCCAGTAGTaaggaaaaactaaaaaaggcCCATGAGGCATCAAAAAGATCATCCGAAGAACCAAATATCACAGAGAAGAGCTCTGTGGAGGACAGTAGTCCAAACAGGAAATTGTGTTTCATGGAAACATTGAATCTAACCCTTTCACCAATTAAGAAGCAAGTGTTGCCTGCCAATACCACCCAGCCTGAGCTCCCACCAGTGGTAGTGGAAAATGGGGCAGATGATGAGAGTTCACAACCTAACGTTGAGGACATGTGTGTGATTGATGAACTAAACAGCAGTGAATTAGAACCAGGGTTGGAAGATGTTGCAGATACCCCCAAAAAGCCAAGCTCTGAAACAACACACAAGAGGTGTGATGATGGGAAAGATGTCCAggagaaagacaaaaagcaaAGTAAAACTCCTGCAGCTGACGAGCATCATGAAGACAGTTCATTTCAATCTACCTCATCTCACAGCCGACACCCAGGTGCTGCAGATAATCCGATGGCTGTGCATCTCGCAGCAACATCAGCAGAGATTAGTTCTCTAAAAGCAAGAAATCATGAAGCCAAAACCCAGCAGGCCTCAGACAGCCAGGAAGATGATTGTGGATCTGTGGAGGCTACAGATGGTGACAGTGACAAGTCCAGACGCATTTATGAACCGCACAAAGGCAATTCTTCACAAAAAGTAAATCCTGGAAATGATATTGATCAATCTGTTGCTATTACAGACCCCATTATGCTTGATTCAAGTGTAGAACTGAAGTGTAAAAATCCTAAACCTGCAGTACAGAAAAGCCTCCCTGTGGATTCAGAAGATGCAGCTGCTTCGCCCTTAGGAGAAAATCCTGTAGCTGAAGATGTTACTGACAAGGCCATCCTCAAAAGTCAGCAAATGTCTGCCACTATGCTGCCTCAGGACTGTCAGCAAGGACTCCTGGTTTCCAATTCCATTCACAAGAAAGATACTGGTCATACGCAAGATGGTCCTAAAGATGCAGATACTGTATCTAGTACAATAAGCCTGGAATCCCTTCCACAAGAAGGGCTGAGTCTAGCTGAGGCTATTTACGTTTTAACACAGACAAATGAAGACACCAGTGACTGCAGTAACATCTGCACTGAGCCCAGCTCCTCCACTGGCTGCATCGCCGTGTCCAAAGTCAGCAGTACCACCGAGGAGACGGCGCTGCCAGAGAAGTACAGGGACCTGACTTTCACACCAAAGAAGAGCTTCACCCCTCGAAAGAGTCCTGGCGTTGAGCCTTCCAGTTCTGTGCCTTTACTCCATGATGAGGACTCCATGATGCGCACGCTGAGCAATCTGAAGAGAATCCCTGATGCCATAAGCCCTCTGAGGAGCCCAATACGGATAACCAAGAGGAGTCTTCTCCATGTTCACGGCAAGCCAGGTCATGTCAAGAGTCTTCAAAAAGAGTTCTCCACCACAGCTGTTGATGCCAACACTAAGAAGTTGGAtgtaaacaaagaaaacaaatatccGGGTTCTCCTGCAAACCATGACGCACAAACCGTGGTGGATGAGGTATCCGACCTGCCTTCAAGTCTCTCTGATGCTGAACTGGAGGAAGGGGAAATTTTCAGTGAAAGTGATGAGGCGGCTGCAGATTCTCCTCTTCCTGCAAACAAGAAGGCCAAGTTAGCACAACCAGTCAGACATAAACCAAGTCCTAAGTCTGTGCTAAAGAGGAAATCTAAAGAAAGGTGTGTTGCATCAAAAGACACTCCTGAAACAGCAGGTGTATCGACACGAAGTCCAAAGAGTCGTTTTAAAACCGTTTGTCCCGCAGCAACCAAAGCTTCCTTTTCCACCGTAGAGGAAGTAATGGAGACCTTCAAAGTGGTTCGTAACGAGATCCGAAAAAAGTACATGAAGCTTCATAAAACCTTTCCCAAGAAGAGCTTCTATGGTGTCATGGACAATTTCCAGGAGTCGTTCTTCGAATTTGTGGACGGTGCTCATTTTGGTCAAATATGCAGTCAGTCAAGGGAGCTGAAATCCACGCTGAAGAAATTGATTGCGTCTGTGTTTGGCAAAGTATCTAATAATGGTATTGTGAAACGCATTTTTGAACAGCAAGCAGTCAATCTGAAGCAAAGGTTGTGGGACTTTGTAGATGTCCAAGTTGACTACTTGTTCAAGGACATTTACACGGCACTAAAGAGCCTTTGCAAACCAGCGAGAGCTCAGGCTGAGGATGACTGGCCCCGTGGAAATGAGAAAGTATCCCGACAGCCTCCTGCAAAGAGAACACACTGTCAACAACAGGATGCACAATCGCCTCCGACCAGCCTGAATCGAATCAAGCCATGCGCTGTGGCACCTTACAAAACAGGCCTTGGAAGCAGAGGAAAAGATATTCGAATCACACATGTGGAGAAAGACGGGAGCGTTGATCCACATCCAACAAGTTGCCCAAATACACAAACTGTGGCCGACCACCTTCCTCCAAAAACTATTCCTTCAACTCCAGAGAAAAGTAACATATCATCTTTGGTTGTCCCTCAAAATGTCTCTTTGCTTGAGAAAACGGACTTTGAGCTTCTCACAGAACAGCAGGCTTCCAGTTTAACATTCAACCTGGTGAGAGACACTCAAATGGGAGAAATCTTCAAGTGCCTCCTGCAAGGATCCGACTTGTTAGAAAGCAGTGGCATCACTGGAGACAGCACAGCCTGGTCCCTCAGTACACCCAGGAAGGATGGCGAGAGGCTCCTCAGCATCACCACTCCCACTAAATGTAACTCTTCGTCTAAACTGCTCTCCCCGACAAAATTTGCTACTCCCTCAAAACTTATCGCAACATGGTCTAGCATTTCCCCTCGCAAGATGTTGTCTCCACAAACCAAAGATCAGATCCCGCTGAATCCAGCTTTATTCGATGAAAGTTGCTTGTTAGAAGTGCCTTCAGAGAGTAGCACAATGCTGCAGTCCAGCTTGGCTTCACAGAGGTCATATTCCATTCTAGCTGAAGATCTGGCAGTCTCCCTCACCATTCCATCACCTCTCAAGTCCGACAGCCACCTCAGCTTCCTACAGCCGTCGGGCATGCACCACATGTCCACGCCAGACAGCGTCATCAGCGCTCACATAAGTGAGGATGCTCTGCTGGAAGAGGAAGACGCTTCAGAGCAGGACATTCACCTGGCCCTCGACACAGACAACTCCAGCTGTGGCTCCAGCAGCAGCGAAGTACTCGCCACACCTTTCTTGTTCAAGCCTGACCTGCCCATGCACGCGCTTGTGATGGAGAAGTCCAATGATCATTTCATTGTGAAGATTCGCCAGGCGACCACAGGAGCGGATACCAGGCTCACTGCTGAGGAAAGCTCAGGTCAAATACTAACCAAAGAAAATGACGTTGACACTAAAGACAGTCGAGCAAAAGCTGTTTGGTCGGACAAATCGCGGAATGAGACTCCTTCAAATGCTGTACCATCAGAGAACCATATGTCTGGGACCGATGCAGACATCCATCTCACTCAGGATGAGCGCTTAACACTAACAAAAGAGCCATCCCATGAAAAAAAATTGGCAACTCAGCAAAATACCTCAAAAGTTTATTTTTCTAAGGATTCACAGAAACTGTCAGAGTCTCTGAAAAGTCAGTCTAAAACTACTCCTTCAGACAACAGTTTGCCCAACAGTGCTCAAAGCTCTGATCTTTTTTTTGGACAGATCAgccaggcaaccagcagagaAGATATCCCAGCCACAGCTGATGAGAAGGCAAGTGAAACACGCCACAGAGGAGAAGAGGGGACGACTCTTTTGTCTAAGCCTCAGAAAAGGATCAGTTGCTCCGAAACTGTGGTATCAGATAACCGTCCACATCAGCCTGCTGACAGCTCCGAAACTAATCACAGGAGCCAAGTGTCGGCGTCACATGATTCAGATGAAATGCAGGTGTCCGAGAGAAGTCTCGCCATTGCGGAGGACGACATAAGCAGCAcaccagagagagaggaaagggatTGTGACAAAGGTAGAAAACGGAAGAAGCACCAGAAATCAAAAGCCAAGCGGTTCAGAAAGGAGGATGAGGAGAGTAGAGAAGAGAACAATGAAGGTGAATCCAAATCCTCCCCAGCGTCTCTCTCCCCCAACAGTCTCTACGCCAAGAATGTGATCAGGAAGAAGGGCGAGGTGGTGCTGGCATGGACCAGAGATGAAGATCGAACTATTCTGATTGGCCTGAAGACAAAAGGGGCTTCACGGGAGACTTTCTCTGCCTTGTCAGAGACACTTGATAAGCCGTCAGAGCAGATTGCTGACAGATTCTACCAGCTGATGAAGCTTTTTAAGAAGCAGGAGAAGATGGACACTTGATCCCTCGGACTGTGTTATTGCAAATAGAGCATTTCCACACACATGCTGTGGCAGCAACACAGGTATGTCTGCTGCTGTTCATGTGACACGTTGCTGGAAGAAGTGACCGCAGGGTGGCCCCGTGGGTCACAGGATGGAACCCCACATAGGCATGCCTATCCAGATCCCTGAACGGAGCCCTGCATAGTCCAGCCAAGACAAAGAAGAGCGGCTGTTTTAGCCCAGCTTTGTTACTCAACAGAAGTCCTAAATCCAGTCACTGCCAGGGAAGGTATTTTGTTCTGGATACTAAGCTGGACCTGTTCATATTGTTCATGTGGAAAATAAGGATTAAAAAATTACTCTTCCACAGCACAATTGACAACATAGAGTTAACAtcggtgtttttgtttttggtgcacttttagtttttttaggaATCCCCACAGAGTCACTATGTCAGTGTCAGGTCTGGATCTGATGCTTGGTCCTTTTCTGTCCAGCATCTATTCATGCCTTCTCTCGTTGCCTTTGCAGAAATGATCCGTTGCAAAGCTGGTAGGCTCAACAAGTCCTTAAGTTCATCTTGCGTCTTCCTAAAAGTAGTGGAGAGAAACAACAGAAAGCATGAGCCATCAGTAGACCATGGGCTCTGGGGCTGATAGATTGGGACATTTTAGTAGAATTCTGTATGAGATATGTTGGATCTTATTTTAATGTATgtaggggaggaggagg

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246559 lncRNA downstream 2003 3658371 ~ 3659550 (-) True G181932
TU246553 lncRNA downstream 8947 3651795 ~ 3652606 (-) True G181929
TU246546 lncRNA downstream 13766 3646853 ~ 3647787 (-) True G181922
TU246541 lncRNA downstream 32750 3622982 ~ 3628803 (-) True G181920
TU246539 lncRNA downstream 32994 3622982 ~ 3628559 (-) False G181920
TU246659 lncRNA upstream 74056 3752653 ~ 3755268 (-) False G182004
TU246657 lncRNA upstream 74135 3752732 ~ 3755268 (-) True G182004
TU246674 lncRNA upstream 152153 3830750 ~ 3831397 (-) True G182018
TU246683 lncRNA upstream 187420 3866017 ~ 3866360 (-) True G182027
TU246684 lncRNA upstream 189267 3867864 ~ 3869699 (-) True G182028
XM_039782865.1 mRNA downstream 16983 3640175 ~ 3644570 (-) True gja10b
XM_039782644.1 mRNA downstream 1048018 2590462 ~ 2613535 (-) True ufl1
XM_039781876.1 mRNA downstream 1254398 2400734 ~ 2407155 (-) True col10a1b
XM_039782382.1 mRNA downstream 1277468 2359433 ~ 2384085 (-) True frk
XM_039781100.1 mRNA downstream 1336275 2322664 ~ 2325278 (-) True LOC120546265
XM_039782441.1 mRNA upstream 94573 3773170 ~ 3822913 (-) False ankrd6b
XM_039782440.1 mRNA upstream 94573 3773170 ~ 3822913 (-) False ankrd6b
XM_039782432.1 mRNA upstream 94573 3773170 ~ 3822913 (-) False ankrd6b
XM_039782436.1 mRNA upstream 94573 3773170 ~ 3822909 (-) False ankrd6b
XM_039782434.1 mRNA upstream 94573 3773170 ~ 3822909 (-) False ankrd6b
TU246538 other downstream 51224 3608847 ~ 3610329 (-) True G181919
TU246464 other downstream 285445 3375765 ~ 3376108 (-) True G181860
unassigned_transcript_1007 other downstream 2807330 854151 ~ 854223 (-) True trnav-aac_19
unassigned_transcript_1005 other downstream 2813720 847762 ~ 847833 (-) True trnad-guc_21
unassigned_transcript_1002 other downstream 2819528 841954 ~ 842025 (-) True trnad-guc_20
TU246718 other upstream 213045 3891642 ~ 3893159 (-) False srp9
TU246726 other upstream 228020 3906617 ~ 3912279 (-) True G182061
TU246722 other upstream 229950 3908547 ~ 3914015 (-) True G182059
TU246771 other upstream 421413 4100010 ~ 4100480 (-) True G182102
unassigned_transcript_1013 other upstream 470310 4148907 ~ 4148978 (-) True trnav-aac_20

Expression Profile