RNA id: XM_039782325.1


Basic Information

Item Value
RNA id XM_039782325.1
length 1384
RNA type mRNA
GC content 0.42
exon number 2
gene id LOC120546991
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 9853740 ~ 9855384 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aaaaacacacattcgtTGGATAATGACTCCTCACAAGTTGTGATTGCACAATAAGCCCTAGCATCTCTCTATATAAAGGCAGCTGACTTGTGGTGAGTACAACAGAATTCAGCAGACCAGTTGACTTCTTCCTGCTGAACATTCACCGTCAGCAGACACTTACCCACAATGGCCTACATCTCACAACTTGATGTGTCGCTTAATGAAGCTGAGATGAACCAGCTCAAATCACAAGGCTTCAAGAAAATCGATGTTAATCTGAACCAAGGAGCAGGAGGAAATGACATCTATCTTTGGTACAAAAATGGGTCAGTACCAATCACTAAGCTTCAAGCTACATACAGCCATGAAATGGCTGCTGGATTTGACAAAGCAGGGTACAAAAAGATCCCTAAAGATCTCAATGCTGGAGAAGTAGGTGACTCCATCTACCTTTGGTACTTCAGCGGGTCCGGAGAGTATGATACTCCTATAGTAGAGATTGATGTCAGTACAGATGCTGAGAGAGAAGCCCTGAAGTTCAGCACAGGCTGGGAGACTCTGGCCTGTGATCTAAACCGCAACGCTGGAGGGAAATGGATCTATGTCTGggtgaagagagagaaacaaacctTCATCTGTGATGTCAGTGCCACTAATAACTTCAGCTCAAACGATGACTACTTAACGGCAGGTTACATCCGTTTGGATGAAGATACTAACAGAGGTGCAGTAGGATGCTATGTCTTCATCTGGTACCGCCAGACCCCCGACCCCAGGCGTGCGCTCACTGATCTGCAAATCTCCACCAATGATAAAGAGTATCAGTCCTTTAAGCAGCAAGGTTACACTCGAGTGGTTGTTAACCTCAACAAGGGGACCGGAGGTAACAAGGTGTACCTGTGGTACAAGAAGGGAGACAAGCCAATTAAGACAACCACCCTGCTTATCAACCCAGCTGCTGTTCCAATGTATAAGAAGGCTGGTGCCACTGTTATAGAAAAAAATCTCAACACAGGCACTAAAGGCCAAATTAAGTACCTGTGTTTCCAtcagtgaaaggctgagaaatccTTCTTCATTGAAGCAGAGCTGAGCATTCCCAACACTCACTGAAGTGGAAAGCAAAGATCATAAATGTTGTTAAATCATTCTGGTGATGGGCTCTTTCTTCTGCTTTTCTTCAATATAGAAAACATTGTGATTAAttatgttacagtaacacaactgGTAATATCAGAAAGTAATAATGGTAAATGTCTCATACTCTTAGACTGTTAATATGACTAATGTTTCCAGTCTGTGTTCTACTGTTAAACTTGCTGTTAATAATGATGTTAGTGATTGAGTATTAAAGCTTTGTATCACTTTATTCTGAACATTTCCTGTTTTTCAATAAAGACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248291 lncRNA downstream 6882 9829876 ~ 9846858 (-) True G183317
TU248269 lncRNA downstream 135535 9716590 ~ 9718205 (-) True G183299
TU248268 lncRNA downstream 138401 9709053 ~ 9715339 (-) True G183298
TU248264 lncRNA downstream 166621 9686722 ~ 9687119 (-) True G183296
TU248225 lncRNA downstream 310514 9532546 ~ 9543226 (-) False G183263
XR_005636844.1 lncRNA upstream 79803 9935187 ~ 9938482 (-) False LOC120546255
TU248334 lncRNA upstream 79840 9935224 ~ 9938556 (-) False LOC120546255
TU248335 lncRNA upstream 79840 9935224 ~ 9969773 (-) True LOC120546255
TU248336 lncRNA upstream 79840 9935224 ~ 9935658 (-) False LOC120546255
TU248337 lncRNA upstream 79840 9935224 ~ 9938556 (-) False LOC120546255
XM_039782710.1 mRNA downstream 231029 9603488 ~ 9622711 (-) True stmn4
XM_039782254.1 mRNA downstream 296811 9550004 ~ 9556929 (-) False paqr8
XM_039782253.1 mRNA downstream 296811 9550004 ~ 9556929 (-) True paqr8
XM_039781901.1 mRNA downstream 326312 9505432 ~ 9527428 (-) False znf395b
XM_039781899.1 mRNA downstream 326312 9505432 ~ 9527428 (-) True znf395b
XM_039782467.1 mRNA upstream 89481 9944865 ~ 9945741 (-) True LOC120547068
XM_039781122.1 mRNA upstream 244094 10099478 ~ 10101052 (-) True LOC120546281
XM_039781123.1 mRNA upstream 244122 10099506 ~ 10101052 (-) False LOC120546281
XM_039782752.1 mRNA upstream 280616 10136000 ~ 10137776 (-) True LOC120547244
XM_039782754.1 mRNA upstream 292691 10148075 ~ 10173978 (-) True cnstb
TU248116 other downstream 720268 9129573 ~ 9133472 (-) True G183176
TU247995 other downstream 1066523 8783788 ~ 8787217 (-) False LOC120546397
TU247804 other downstream 1828696 8024715 ~ 8025044 (-) True G182977
TU247776 other downstream 2087354 7761565 ~ 7766386 (-) True G182952
unassigned_transcript_1032 other downstream 2820338 7033330 ~ 7033402 (-) True trnak-uuu_21
TU248390 other upstream 244219 10099603 ~ 10101061 (-) False LOC120546281
XR_005636937.1 other upstream 646536 10501920 ~ 10610625 (-) False LOC120546776
TU248535 other upstream 665333 10520717 ~ 10521410 (-) True G183528
TU248695 other upstream 1518724 11374108 ~ 11374615 (-) True G183650
unassigned_transcript_1080 other upstream 2727785 12583169 ~ 12583241 (-) True trnat-ugu_2

Expression Profile