RNA id: XM_039782336.1


Basic Information

Item Value
RNA id XM_039782336.1
length 2072
RNA type mRNA
GC content 0.51
exon number 13
gene id pdia6
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 22611027 ~ 22621105 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGGACCAATCAGCGTGGGCCACGGTGAGATTTTTTTCGAGCTACTTTCTCTGGGAGAAGCAGCGGCAGCAGTCAGCGTGTTGCTAACAGAGGAGTCCGTTCAGAGAGCAGCTAAAACCATGAGACCGCTTTTACTTGGAGTGCTGGGCTGCTCTTTGGTCCTGTCTGTCCAAGCCTTTTACTCAGCTAGTGATGATGTTGTTGAGCTCACCCCCTCCAACTTCAACAAGGAGGTGATCCAGAGTGACAGTCTGTGGCTGGTTGAGTTTTACGCTCCCTGGTGTGGCCACTGTCAACATCTAACTCCTGATTGGAAGAAGGCGGCCACTGCCCTCAAGGGTATTGTCAAGGTTGGTGCCGTAGATGCAGACCAGCACAAGTCACTGGGTGGCCAGTATGGCGTCAGAGGTTTCCCCACCATCAAGATCTTTGGAGCTAATAAGAACAAGCCAGAGGATTACCAAGGTGGACGCAGTAGCCAAGCCATCGTGGATGGAGCCATGAACTCTTTGCGCACTCTGGTGAAAGAGAGGCTGAGCGGCAAGTCTGGCGGCTCTGGCTACAGCAAACAGAGCGGTGGCGGCGGCGCTGGCAATAAGGCGGATGTGGTCGAGCTCACTGATGACAACTTTGACAAGATGGTGCTGGAGGGTGATGAGGTGTGGATGGTGGAGTTCTTCGCCCCCTGGTGTGGACACTGCAAAAACCTGGAGCCTGAGTGGACAGCTGCAGCCTCAGCTGTCAAGGAGCAGACCAAGGGCAAAGTTCGCCTCGGAGCTGTTGATGCTACCGTACACCAGGCTGTGTCCAGCCGCTACGGGATCCGTGGATTTCCAACCATCAAGGTATTCCGCAAAGGTGAGGAGCCCGAAGACTACCAAGGAGGCCGCTCCCGTGGAGACATCATCGAGAGGGCCTTGGATCTGTTCTCTGACCACGCTGCTGCTCCTGAACTGCTGGAGATCCTCAGTGAAGACCTCTTCAAAAAGACCTGTGAGGACAGTCAACTGTGTGTGATAGGCGTCCTGCCACACATCCTGGACACAGGCGCAGCAGGTAGAAATGGCTACCTGGAGGTGATGAAGAAGATGTCGGAGAAGTACAAGAAGAAGATGTGGGGCTGGCTGTGGACTGAGGCTGGAGCTCAGATGGAGCTGGAGGCCTCTCTGGGTATCGGTGGCTTTGGCTACCCTGCCATGGCCGCCATCAACACACGCAAGATGAAATTTGCTCTGCTCAGGGGTTCCTTCAGTGAGACTGGCATTCACGAGTTCCTCAGGGAGCTTTCTGTGGGCCGTGGCTCAACTGCTACATTGGGAGGTGGCAACATGCCCAAGATTCACACTGTTGAACCCTGGGACGGCAATGATGGACAGCTTCCTGTGGAGGAGGACTACGACCTCAGTGATGTAGACCTGGATGATGACTTTGATAAAGATGAGTTATGATCCAGACTGGCTTGGTTGGATCTGGTCTGGTCCTGTGCGACTCGCCTCCCCTCTCCTGTGGATGAATGGGAGGCCCGGTTGCCCAGTTACTGAAATATTCCAGAAAAGACACATAAGAGACACCTGCAGTTTCTCACATCTATGTCAGTCACACAggacaggagggagggaaggagggagggagggagggaaggagggagggaggcgtGTGTTGTGTCCCTGGAGTGAACTCTGCCTCACATACCTGCTTAACGTTAGAAGCTGCATATTTATACGGCCGCCGTCAGCTgagtggaggagggggggggttcTGAATGTGGCATCTTTAGTTGGTCATTCTCATCATTTTAAACATTGTTCCCCTCTCCCTTCTTCAACATCTCAAGCACCTATTTTAAAATGTGGACTTGTCAAAGTAACACTTCAATGTCCAACTTAATGTGactcattactttttttttttttttttttcctttttttttaaaaccagtaaGTGAGAATCTTGGTGAGTCTGTCCAGGACAAGGGGGTACTGTGGGACTTGTGTAGATTTTTCTTACACGACTTTATTTCAATTGTGTGAAAACAAATTTTTttgttacaaaaataaaaaggaataaaaacaa

Function

GO:

id name namespace
GO:0045454 cell redox homeostasis biological_process
GO:0006662 glycerol ether metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0015035 protein disulfide oxidoreductase activity molecular_function
GO:0016853 isomerase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252644 lncRNA upstream 73311 22535659 ~ 22537716 (+) True G186506
TU252572 lncRNA upstream 309544 22300784 ~ 22301483 (+) False lin28b
TU252574 lncRNA upstream 316330 22294442 ~ 22294697 (+) True G186452
XR_005637027.1 lncRNA upstream 777245 21832948 ~ 21833782 (+) True LOC120547080
XR_005636932.1 lncRNA upstream 864473 21745581 ~ 21746554 (+) True LOC120546760
TU252735 lncRNA downstream 95865 22716970 ~ 22719893 (+) True G186578
TU252803 lncRNA downstream 178630 22799735 ~ 22800058 (+) True G186622
TU252810 lncRNA downstream 188115 22809220 ~ 22809461 (+) False kcns3b
TU252843 lncRNA downstream 225767 22846872 ~ 22847674 (+) True G186641
TU252914 lncRNA downstream 340946 22962051 ~ 22966010 (+) True si:ch211-22i13.2
XM_039782885.1 mRNA upstream 19751 22589900 ~ 22591276 (+) True LOC120547327
XM_039782886.1 mRNA upstream 21702 22587857 ~ 22589325 (+) True LOC120547328
XM_039782273.1 mRNA upstream 25820 22554861 ~ 22585207 (+) False LOC120546968
XM_039781181.1 mRNA downstream 29137 22650242 ~ 22666743 (+) True apobb.1
XM_039781182.1 mRNA downstream 50720 22671825 ~ 22687350 (+) True LOC120546321
XM_039781184.1 mRNA downstream 78954 22700059 ~ 22715832 (+) True LOC120546322
XM_039781195.1 mRNA downstream 99010 22720115 ~ 22755144 (+) False pum2
XM_039781194.1 mRNA downstream 99011 22720116 ~ 22755144 (+) False pum2
TU252499 other upstream 545438 21985779 ~ 22065589 (+) True G186394
TU252459 other upstream 664027 21944743 ~ 21947000 (+) True erh
TU251678 other upstream 2750822 19856735 ~ 19860205 (+) False kif25
TU251521 other upstream 2962871 19634283 ~ 19648156 (+) False acp1
XR_005636890.1 other upstream 3071819 19429596 ~ 19539208 (+) False nhsl1b
XR_005636956.1 other downstream 957273 23578378 ~ 23589689 (+) True nfkbie
XR_005636955.1 other downstream 957273 23578378 ~ 23588514 (+) False nfkbie
TU253325 other downstream 1458498 24079603 ~ 24083104 (+) True G186975
TU253479 other downstream 1885808 24506913 ~ 24507813 (+) True G187094
TU253601 other downstream 2382914 25004019 ~ 25009407 (+) False lama2

Expression Profile