RNA id: XM_039782343.1


Basic Information

Item Value
RNA id XM_039782343.1
length 1171
RNA type mRNA
GC content 0.41
exon number 4
gene id grcc10
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 24515444 ~ 24518183 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAATTGTCGTAGAATGCGTCGTTTTccagctgattggctgatttCCACACGTCTGTTACAAGCTAGCTAGGTTGTGGGTTTTTTTCTCATTAGTGaCATGGCGTCAGCTCCAGCACAGCAGCCCACCCTCACTGTTGAGCAGACCAGAGTGGTACTGAGTGAGGTGATCCAGGCCTTCTCAGTACCAGAAAACGCTGCAAGGATGGAGGAGGCTCGAGAAAGTTCCTGCAATGACATGGGCAAAATGCTGCAGCTTGTGCTGCCTGTTGCCACCCAGATTCAACAAGAGGTTATCAAAGCTTACGGCTTCAACAATGAAGGAGAAGGTGTCCTAAAATTTGCCAGATTGGTGAAGATGTATGAAACTCAGGACCCTGAAATCGCAGCCATGTCAGTTAAACTGAAGTCTCTCCTCCTGCCACCACTGTCAACACCACCTATAGGAGGCGCCATTCCAGCTTCATAGGGCTTCTTTACAGTCAATATACAGTCAACGGCAAGGTTACTTTCATCTAATGCTTTGGATCAACATGAACATACTGCAATTCCAAGATCTTGTCTATTATCTACTTTTCTTGAGAACTCACTCTTACTCAATACACTAATACGTTCCAACAAAGATGAAACTCATGCCTTATCTACATTatggtttaatttaaacatCCTTGCTAAACCCTGCTAAATTAttgcttttttacatttttcagtaTTTATTTGTTACAGGTTACATTGTGACTGTTTTCTTATGTTACTGAACCTTATACACCTTTCctttaaagcctctgaacacccacaaaggtgatttcagttattctggctgatcAGACCTCTGCTCAGGTGGAAGGTGAGCCAGAGCTCAGATGGGAATTTATTAGATCACAAATcttttctaccaataagaaGGATAAAGCTGTCATTTGTCCTGCCCTATCAGGTGCAACAACGCTAACAGGAGACTCCGGAAGATGTCCATTAGtctatacacacccacacaatcCTGGGAAGAGGTCCAATCAGCCAGGTTAACTAAGAAAACACCCAtgtgggtgttcagggccttACACCatcttttgttcattttttaaaaataattttaattataCCATTTTTATATGCTGTCAGATGTATCAAATTGTAttcttttgttatatattaaaaaaatttatgtgAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU253454 lncRNA upstream 128276 24386956 ~ 24387168 (+) True G187074
TU253387 lncRNA upstream 280693 24211413 ~ 24234751 (+) True G187027
TU253347 lncRNA upstream 327580 24185289 ~ 24187864 (+) False extl3
TU253322 lncRNA upstream 368226 24072763 ~ 24147218 (+) True G186972
TU253548 lncRNA downstream 118542 24636725 ~ 24639484 (+) True G187158
TU253556 lncRNA downstream 137787 24655970 ~ 24656643 (+) True G187165
XR_005636936.1 lncRNA downstream 491330 25009513 ~ 25012350 (+) True LOC120546772
TU253634 lncRNA downstream 491347 25009530 ~ 25012241 (+) False LOC120546772
TU253656 lncRNA downstream 592863 25111046 ~ 25115288 (+) True G187212
XM_039782057.1 mRNA upstream 9055 24498746 ~ 24506389 (+) True LOC120546832
XM_039781350.1 mRNA upstream 29845 24446908 ~ 24485599 (+) True LOC120546425
XM_039781804.1 mRNA upstream 79121 24419260 ~ 24436323 (+) True rars2
XM_039781805.1 mRNA upstream 79121 24419607 ~ 24436323 (+) False rars2
XM_039782704.1 mRNA upstream 97644 24413847 ~ 24417800 (+) True akirin2
XM_039782287.1 mRNA downstream 12148 24530331 ~ 24630590 (+) False LOC120546974
XM_039782288.1 mRNA downstream 12148 24530331 ~ 24630590 (+) False LOC120546974
XM_039782291.1 mRNA downstream 12148 24530331 ~ 24603824 (+) False LOC120546974
XM_039782289.1 mRNA downstream 16539 24534722 ~ 24630590 (+) True LOC120546974
XM_039781351.1 mRNA downstream 291896 24810079 ~ 25009457 (+) True lama2
TU253479 other upstream 7631 24506913 ~ 24507813 (+) True G187094
TU253325 other upstream 432340 24079603 ~ 24083104 (+) True G186975
XR_005636956.1 other upstream 925755 23578378 ~ 23589689 (+) True nfkbie
XR_005636955.1 other upstream 926930 23578378 ~ 23588514 (+) False nfkbie
TU252499 other upstream 2449855 21985779 ~ 22065589 (+) True G186394
TU253601 other downstream 485836 25004019 ~ 25009407 (+) False lama2
unassigned_transcript_1083 other downstream 701685 25219868 ~ 25219940 (+) True trnat-ugu_3
TU253978 other downstream 1509877 26028060 ~ 26030400 (+) False nudt14
TU254022 other downstream 1758512 26276695 ~ 26281368 (+) False gareml
TU254081 other downstream 1927467 26445650 ~ 26452304 (+) False tfap2b

Expression Profile