RNA id: XM_039782345.1


Basic Information

Item Value
RNA id XM_039782345.1
length 2838
RNA type mRNA
GC content 0.50
exon number 8
gene id ube2j1
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 4407988 ~ 4475102 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTCCTGTTTACGTTTCCACAAATGACGTCACGCggataacatttaacaaacTGTTTCAAAACCGAAACAGCGCATAACTTGAGCAACAACTCTTCAATATTCTTGTGACGGATGGATTCAAATACCGTCTAGTGTACCTACATACTGGAACATCGTGGAGACTGAACGATCTACGTTTTCAACTGTTCTGCTCATATTTGAGGACCCGAAGGAAGCTAGCCGGGGCTGCTAGCTAAGTGAAGCTAACGTTAAGTAGGTAGCTGGGAGCTAGCTAGCCATTTAGCAACATTAACTCAACAGGACTTCATCTTTAACCAGAGTGCTCAACATCTGTTGGTATGGAGAATAAATATAACCTCAAGAGTCCAGCGGTGAAGAGGCTGATGAAAGAGGCTGCTGAACTGAGGGATCCCACAGAGCACTACCACGCCCAGCCACTGGAGGACAACCTCTTTGAATGGCACTTCTCCGTACGTGGGCCCCCAGATTCCGATTTCGACGGCGGGGTTTACCACGGCAGGATCGTGCTTCCCCCAGAGTACCCAATGAAGCCCCCTAGCATCATCCTCCTCACGCCGAATGGAAGATTTGAAGTTGGAAAGAAAATTTGTTTGAGCATCTCTGGCCACCATCCGGAGACCTGGCAGCCCTCTTGGAGCATCCGAACCGCCCTAATAGCTATAATCGGATTCATGCCAACAAAAGGAGAGGGGGCGATAGGATCTCTGGATTATACTCCAGAAGAGAGGAAGGCCCTTGCCAAAAAGTCCCAGGACTTCTGCTGTGAGGCGTGTGGCTGCTCCATGCGTTCTGCCCTCCTGGCTCTGACCCCCAACAGCAACCCCAGCGCAGAGGACCACAAGGCTAAAGAGCTGGCCCAGCAAATCAACTTCAAGGAAGAGTCCAGTTTATCCAGACAGGCAAGTGAGAGCGGAGGTGCAGAAAGCGAGCCTTCCACACTCACCCAGGAAGACGCCTCCACGTCTGCAGGCCAGGAAGCTTCTGAAGAGCCCCGGGCTGAGCAGGCAGAGGCGTCTCCAGCCACAGGAACAGTCGGGCCCCAGGCCCCCGCGGCCCCCGTCGTCGGCCGCCCGCTCAGCCCCCGGCAGCGTCGTGCCCAGCAGCACAGCCAGCAGGGCCAGAGAGACGGCAGAGAACCGGCCAGCAGGCCCGTCTTTGCCCCGACTCCTCGCCAACCTCAGGATGAAGGCCGCGCGGGCTCGGTAGCCCTCATCGTGGTGCTCACTCTGGCCCTGGCCGCACTCATCTTCCGCAGGATCTACCTGGCTCACGAGTACAAGTTTGACTACGAGCTGTGACCACACACACTTTGCTGTCCCTCCTCCTCACGCTCAAGTcatctcccccccccaccccccaccccaacaGAACTATGGCCAGCCGAAGTGGAACCAGAGCCGAGGCGGTGGCTGACACTGACTTCCTGCGCTCCCTGTTTGTCAGCAGAGGGTTCGGTCTCCGCTGAGGAGGGGGGGGACTTTCATTCCTGCAGAGGAGGCGCTCCCACTCTCCACAACACCTCCGGGGGTGTCTTTTAATCAATGTGAATTTTACTTTCCAGAGTGTCATGCATTTTTAAGAATGGGAagctttgttgtgtttgtgatcAGTTCAGCAGCTACACATGCCCCACGTACCCTTCCATAGAATAGTTCTGTCCTAGTGCTGCCACTTGTTCACATTATTTAATTGAAACTGCAATATAATATGTCAACAAGGTTTATGGGGGATTTTTCTATCAAAGTAATGAATTAATCATGGAAGCATCTGCACATAGTGTATGAGCTATAATTCTTTTTGGTTTGCTGTATCTTCCTGTTTGGTCAGGTCAGTCACACCTTACACGGCTCTATTGCAATTGTGCAAATGAAACAGCCACTGTGTAGTCGGTATGGAATTCAAGTCTCAATTCCGTATCTCACGTCGTAAATGGATCATATTGTGATTAATATATATTGTGATGAGGGGAAGGATTGATAAGAGCTGACGTCTCCCACATAAACAGGCAGAATGTTGCATTATAACTGACAAGTCTGATGTGCGTAGAGGTGTGTGTGGGGCGATGCATTTCAAATCAGAGTCTGCACAGTTAGCGACATACGAGTCCTGCTGCTGcctggctgcagggatttgaTGAACTGAAGTACAGTCGTACTGTAGGAATAGCTGGTAATCATTCATAAACCAATGCCGACTGCTTTACCAACGTTCGTATGTTACACCATGTTCCGTGACCACTGTAATGTGTGCCTGCAGGGGGTCGTTGGAGGGACGTTCTCACGCTTTCTACAAGTGAGTAGTCGAATTTCTGACACATGCCATCAGAAAGTGTGGCCCTACTGTAGCTAGgaataagaaagaaaaatagcAGCACTTCTGAAATTGCAAATTGTTGTTCCATGTGGGTTCCATTATAACACGTAGGCGCAGCGCCTTAGCcgaatgaagaggaaaaaaactatGCTGAGAGTTCTCTTGCTCTCATTTATGGTCGCGCCagcttctctgtcctctcctctgcgCGTTTGACCGAGGGCGGGGCTTAgctcctaaacacacacacacacacacacacagcagacagcagGGAGGCTGCGTTGGAGACACCTGCTTTTTCTGCAGTTGTCTTTGTTTGACACAACCACATCGCCTAAGCCCTCAGAAACCGAGGGAAATCCCTGAGAGAGAGGGCTACAGTCTTTATATGAAGTTTACCGTATAGgacattattcatttatttgtttattttgtgagcGTAGGTATGTAGATCTTTTAAAAGGcatgtttatgtttaaataaagaTACCTATACAAGCAA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016881 acid-amino acid ligase activity molecular_function

KEGG:

id description
K10578 UBE2J1, NCUBE1, UBC6; ubiquitin-conjugating enzyme E2 J1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246842 lncRNA downstream 3721 4404025 ~ 4404267 (-) True G182156
TU246841 lncRNA downstream 12983 4394573 ~ 4395005 (-) True G182155
TU246823 lncRNA downstream 123829 4283960 ~ 4284159 (-) True G182137
XR_005637042.1 lncRNA downstream 245878 4157691 ~ 4162110 (-) True LOC120547275
TU246774 lncRNA downstream 304416 4102775 ~ 4103572 (-) True G182105
TU246869 lncRNA upstream 52914 4528016 ~ 4529058 (-) True G182182
XR_005636846.1 lncRNA upstream 71066 4546168 ~ 4554488 (-) True LOC120546262
TU246890 lncRNA upstream 115691 4590793 ~ 4591004 (-) True G182202
TU246972 lncRNA upstream 244815 4719917 ~ 4721769 (-) True G182276
TU247021 lncRNA upstream 333976 4809078 ~ 4809580 (-) True G182302
XM_039782615.1 mRNA downstream 7389 4360202 ~ 4400599 (-) True LOC120547149
XM_039782653.1 mRNA downstream 211628 4195143 ~ 4196360 (-) True LOC120547177
XM_039782648.1 mRNA downstream 223030 4177573 ~ 4184958 (-) True LOC120547172
XM_039782877.1 mRNA downstream 514813 3891637 ~ 3893175 (-) True srp9
XM_039782383.1 mRNA downstream 517338 3884965 ~ 3890650 (-) True ephx1
XM_039782655.1 mRNA upstream 5727 4480829 ~ 4485479 (-) True LOC120547180
XM_039782760.1 mRNA upstream 159441 4634543 ~ 4654939 (-) False cfap206
XM_039782758.1 mRNA upstream 159441 4634543 ~ 4654939 (-) True cfap206
XM_039782759.1 mRNA upstream 159441 4634543 ~ 4654590 (-) False cfap206
XM_039782761.1 mRNA upstream 180754 4655856 ~ 4681570 (-) True LOC120547250
unassigned_transcript_1027 other downstream 229048 4178869 ~ 4178940 (-) True trnad-guc_28
unassigned_transcript_1024 other downstream 232962 4174955 ~ 4175026 (-) True trnad-guc_27
unassigned_transcript_1022 other downstream 236835 4171082 ~ 4171153 (-) True trnad-guc_26
TU246803 other downstream 241992 4163358 ~ 4165996 (-) False G182121
TU246982 other upstream 270671 4745773 ~ 4803470 (-) False smim8
TU246981 other upstream 323819 4798921 ~ 4803470 (-) False smim8
TU246980 other upstream 325809 4800911 ~ 4803470 (-) True smim8
TU247229 other upstream 1315187 5790289 ~ 5792938 (-) True G182474
TU247260 other upstream 1436210 5911312 ~ 5911909 (-) True G182502

Expression Profile