RNA id: XM_039782382.1


Basic Information

Item Value
RNA id XM_039782382.1
length 3183
RNA type mRNA
GC content 0.48
exon number 8
gene id frk
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 2359433 ~ 2384085 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGACGCTTCAAAGTGGCACTGGTTCACGTCCCTTTGCCTCAGTGCTGTGTTGCTGTAGCTGCGTGTGTGCCGCTGTCCGCTCCGGGGATTGCTCCCATCACTCTGGATGTTATTATGGGATGTGGACCGTGAGCGACGAGAGAGGATTCCTGACACGGAATGAGTCGCAGTGATTGACGCGGCCACACCATGGAGATCCAGAAGAGGTTTTCTTCGTGCTGGCAGAGTTTTCTGGCATGTTTTAACAAACCCAACCAGCCCGGAGACGAGCCCAGGCGCGGGGACAAAACGGACATAGTTATCGTTAATCCCGTTCCGGATGATAAAACCACAAATGCGGACTTCATTTCAAAGAGAGCTTTACCGGCAGTTCCTCCCCCGGAGAAAGCAGCAGCGGGGCTTTATATCGCCCAGTATGACTACTCGGCCCGCACCGAGCAGGACCTGAGCTTTAACGCCGGGGACACTTTAGAGGCTCTGGATAAAAGTCCCGGGGAGTGGTGGTTTGCGAGAGCCCTCACCGGCGTCTCGGCCACCAAACAGGGATACATCCCGGCCAATTATGTGGCACCTGTGCAGAGTATTGACGCAGAGCCATGGTATTTCCCCGACACCAAGCGGCTGGACGCAGAGAAGCTGCTGTTGGCCGGAGGGAACCAGCAAGGCGCCTTCCTCATCCGAAACTGTGAAAGTCAGACAGGGGAGCGCTCGCTCTCAGTGCTGGACAGTGGGAAGGTGAAGCATTACAAGCTGAAAAAACTGGAGAATGGTCACTACTATGTGTCGAGAATCAGATCCTTTGCAACGCTGGAGGAGTTGGTGGAACATTACTCCAAAATGGCCGATGGCCTCTGTGTGCGTCTGGGGGAACCATGCAAAAAGatGGAGGCTCCACAGACTCACGGCCTGTCCTACAACACTGTGGACCAATGGGAGATAGACCGCAACTCCATCAAATTACTGAGGAAACTCGGAGCCGGTCAGTTTGGGGAAGTGTTCGAGGGCTTGTGGAACGAAACCACAGCAGTCGCAGTGAAGACCCTCAAACCTGGTACCATGGACACTGAGGACTTCCTGAGGGAGGCTCAGATCATGAAGAGGCTGCGGCACGCCAAGCTGATCCAGCTGTACGCCGTGTGCACCATGGAGGAGCCCATCTATATCATCACAGAGCTGATGAAGAATGGCAGCCTTCTGGAGTACCTACAAAAGGATAAGGGCGCCACGTTGCGGATCTCTGACCAGATCGAGATGGCGGCCCAGGTGGCGTCGGGCATGGCTTTCCTGGAGCTGCAGAACTACATCCACAGAGACCTGGCCGCCAGGAACGTCCTGGTGGGAGAGAACAACATCTGCAAGGTGGCGGACTTCGGCCTCGCCAGGGTCTTCATGaaaGAGAATGAAAATGTGTATGAAGCCAAAGAGGGAACAAAATTCCCTGTGAAGTGGACCGCTCTAGAGGCCATCCACGAAAACAAGTTCAGCATCAAATCGGACGTTTGGTCTTTTGGAATTTTGCTGTATGAGATCATGACGTTTGGACAGATGCCTTACCCAGCCATGACGAACTACCAGGTGGTGCAGAAGCTTCCCCAGGGCTACAGGATGCCGTGCCCCGCCAACTGCCCCAAAGTCATGCACGACATCATGATGGACTGCTGGAAGGAGAACGAGCAGGACCGGCCCACGTTCGAAACCCTGCAGTGGAAGCTGGAGGACTACTTTGACCTGGATGTCACCTCCTATGATGATGCCGGCCGCTACTAGCACAGCGATCAGGCTGCCACACGTGCAAAGAAATAAGATGCAAAAAACAAACCTATTCTTTCTGCACAGATGCAAAATCCAAATCACCTGAATCCAAACAAACATACGTAGATGAATGACCAAACGGATTCAAATGTAATTCAAAATTCCACTCATTGCGGTCACCCGAAGGATCTAAAACTGATGATGCATGTGATGGAAGATTGGAATTAATCTAACATGCCGTGAGGAGGCTTTTACCACAGCTCCAGGTGGTTGCGACACTCCTGTGTTTGACAGCTGAATGTACTTTCAGACCGGCTGTATGTGGATTGCCTAACTCTTAAAGCACTTTGACTCAAAGAGTCCTCGAAAAGCTGCTATCTGTCCATCTCGACAAACTGGTTCTTCTCCTTCGAGAATGGGTGCAATGCATGCTCGCCACTGCCTGTGGAGCTTTTACAAGAAGGTACCTGGCAGGATTGATGAGTCATTTCTTGAGTGAGTCATAGCGAGACTGAGTGATGCCATCTGCTATCATCTCCGTGCACATGTACGAATAGCTACCAGAAGTGATTTAAACATTATTCAAAAATACTGTAGGAGACTGTTTTTGGCTCCAGCAGCCAGAGGGGCTAAATAACAATAACCCCCCAGCCCTTATTAACAAACTACATACAAACTATTTCACTCTAGAGTTAAATCCATGCCCAACATAATCATTACATAATGAAAATGGCTTCCCTACTATCTCTGTGCCACTggaataaagataaaaaaaaaaactaatatttataaCGGCATTCATAGATTATTtttgatttagatttctttGGCCCACTTTGCCTTATTATCTTGAAGTTGATCAATAATCAGTGGCTTATTtggacatccagcagacaccAAGCAACAGCCACATTAACGTGTCGTATTTCCAGCCTCGTGATGAATCTAAATCCTGTATTCGCTCCCCTTTTTTTAGCTTTTGGTCTCCCGCAACTCGTGACAAATATGTCTGCCTCTTTAACTGCTAAATcctccactgtgttcaccagcCGGTATCCTGAAAAGGGCTGCCTGTTGTATCTGAAAAATGGTGCTGATAAGAGCTATGAGTGAATTGCTAATGCAGTTTGGATTTGTTTGCccaataaaattgatagtgttATCTTTCACATCCATTAACCATGTGATAAAGATTATTTAATGTTATGTTCTCTTCATTTGGGTGCACAAATAAAGTAATTCAAGAGCACAAATGATTATTTTAGGTGCCACAGGAATTAGTTATTTCTCCTTCATACTAGGGCTGCAAGATataaggaaaatatctaattgcagttaatttgactgatattgtgatTGCAATATGATTCATGATATTAGAGCAAATGATCAtttgtatcattattttcattaaataaaaaattcaaacaa

Function

GO:

id name namespace
GO:0018108 peptidyl-tyrosine phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004713 protein tyrosine kinase activity molecular_function

KEGG:

id description
K08892 FRK, PTK5; fyn-related kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246261 lncRNA downstream 83348 2275830 ~ 2276085 (-) True G181684
XR_005636826.1 lncRNA downstream 167796 2187535 ~ 2191637 (-) True LOC120546179
XR_005636827.1 lncRNA downstream 171894 2187013 ~ 2187539 (-) True LOC120546180
TU246237 lncRNA downstream 193443 2165704 ~ 2165990 (-) True G181665
TU246202 lncRNA downstream 409909 1946765 ~ 1949524 (-) False G181633
TU246298 lncRNA upstream 66610 2450695 ~ 2479367 (-) True G181715
TU246312 lncRNA upstream 113401 2497486 ~ 2499138 (-) True G181724
TU246335 lncRNA upstream 165422 2549507 ~ 2549932 (-) True G181747
TU246339 lncRNA upstream 173966 2558051 ~ 2561001 (-) True G181751
TU246344 lncRNA upstream 185740 2569825 ~ 2570232 (-) True G181756
XM_039781100.1 mRNA downstream 34155 2322664 ~ 2325278 (-) True LOC120546265
XM_039781102.1 mRNA downstream 34379 2322664 ~ 2325054 (-) False LOC120546265
XM_039782716.1 mRNA downstream 195690 2035665 ~ 2163743 (-) True LOC120547226
XM_039782717.1 mRNA downstream 195744 2035665 ~ 2163689 (-) False LOC120547226
XM_039782072.1 mRNA downstream 698875 1604943 ~ 1660558 (-) True lama4
XM_039781876.1 mRNA upstream 16649 2400734 ~ 2407155 (-) True col10a1b
XM_039782644.1 mRNA upstream 206377 2590462 ~ 2613535 (-) True ufl1
XM_039782865.1 mRNA upstream 1256090 3640175 ~ 3644570 (-) True gja10b
XM_039782303.1 mRNA upstream 1277468 3661553 ~ 3678597 (-) True casp8ap2
XM_039782441.1 mRNA upstream 1389085 3773170 ~ 3822913 (-) False ankrd6b
unassigned_transcript_1007 other downstream 1505210 854151 ~ 854223 (-) True trnav-aac_19
unassigned_transcript_1005 other downstream 1511600 847762 ~ 847833 (-) True trnad-guc_21
unassigned_transcript_1002 other downstream 1517408 841954 ~ 842025 (-) True trnad-guc_20
unassigned_transcript_1000 other downstream 1522188 837174 ~ 837245 (-) True trnad-guc_19
unassigned_transcript_996 other downstream 1530899 828463 ~ 828534 (-) True trnad-guc_18
TU246464 other upstream 991680 3375765 ~ 3376108 (-) True G181860
TU246538 other upstream 1224762 3608847 ~ 3610329 (-) True G181919
TU246718 other upstream 1507557 3891642 ~ 3893159 (-) False srp9
TU246726 other upstream 1522532 3906617 ~ 3912279 (-) True G182061
TU246722 other upstream 1524462 3908547 ~ 3914015 (-) True G182059

Expression Profile