RNA id: XM_039782386.1


Basic Information

Item Value
RNA id XM_039782386.1
length 3105
RNA type mRNA
GC content 0.47
exon number 8
gene id LOC120547035
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 16792438 ~ 16823065 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtgtgcgtgtgtgtttatgtatgtgtgtgtgtgttgggagagTGTGCATGCGCTGCTGCATCGCTGAGCCACAAAGACCGGAGGCGAGGAGAGCTGGAGCGTTTGTCcttcagactgactgactgactgactgcagCTGTAGAGCGGAGGACCGGCCATCCAGCCAGTGGATGAAACTGACAACATTTGGACAGGATGTCAGTGAGGGGCTTGGACCCCACCTGTCCCTCCACTATAAAGCGTGAGCCCTCCAGCCCCAGCCCCAGCTCTCAGGGCGACGTCAGCCCGGCTCAGCCCAGTCCTGGAAGCTCTTCCTCCGACACAAACTCCAGCTACGGGCCCCTGATCAAAGGCCATCACAATCACAGCAATGGGCTGGACTCGCCAGGCCTCTATGGTCACGCAGCGGCATTGGCCAACAATGGAGGGGCAAATAGGAGGTTTGTGGAGGAAGAAAGCCAAGTGAAGTGTGAATTCATGCTGGGCTCGGTGGCCAAGCGCGTGTGTCTGGTGTGCGGTGACGTTGCCTCGGGCTACCACTATGGCGTGGCCTCCTGTGAAGCCTGTAAGGCCTTTTTTAAGAGGACCATCCAGGGTAACATTGAATACAGCTGCCCAGCGTCCAATGAATGTGAAATCACCAAGAGAAGGAGAAAATCCTGCCAGGCCTGTCGATTTGTGAAATGTCTGTCTGTAGGCATGTTGAGAGAAGgTGTGCGTCTGGACCGGGTTCGAGGCGGCAGACAGAAGTACAAGAGGAGAATCGACGCTGAGAACAGCCCGTATCTGCACCCACAGAATGCCTTGCCTCAAAAAAGAACATtCATTGTTGGCGGTGTGGTAGAAAACAAGGTGGTGTCTCTGCTGCTGGTGGCAGAGCCAGAGGGCATCTTCGCCATGCCGGACCCCACTGTACCTGAGAGCGACATCAAGGCTCTGACCACGCTGTGCGACCTGGCTGACAGAGAGCTGGTGGTCAACATCGGCTGGGCCAAACACATCCCAGgcttcccctccctctctctggctgACCAGATGAGTCTACTGCAGAGCGGCTGGATGGAGATTTTGATTCTTCGAGTGGTGTTCCGCTCGCTGGCCTTGGAGGACAAGCTGGTGTACGCCGAGGACTACATCATGGACGAGGAGCAGTCGAAGCTGGCTGGGCTGCTCGACCTCAACAACGCCATCCTGCAGCTGGTGAAGAAGTATAAAGCCATGGGGCTGGAGAAGGAGGAGTTTGTGGTCCTCAAGGCTATCGCGCTCGCTAACTCAGACTCCATGCAAATTGAGGACTCCGAGGCAGTCCAGAGACTCCAGGACGTCCTTCACGGGGCCCTACAGGACTACGAGGCCACCCACCACCCAGAGGACCCTCGGCGGGCCGGCAAACTGATCATGaccctccctctcctccgtCAGACGGCTGCTCGTGCTGTCCAGCACTTCTGCAGCATCAAACAGGACGGCCGGGTGCCCATGCACAAACTGTTCCTCGAACTGCTGGAAGCCAAAGCCTGACCCGAACACAGACAGCCATCAGCCTGGTCCTGCCCCCCGACGCAGCGGGTTAGGATGACAGGGAGTGAAGGATAACGGGTAATGGTGGGGTTTGACACTATGTATTTTTCCATTTCAGCTTTGACAAGTTTTGAATCTGCAATCGCCGGGAAGTATGTTCTGTAGGCAAGCAGATGGAACAGTTTTAGAGCAACATCCTTCCTACTCAAAATGAAAGTTTGAATGGAGCAGTTTAATTTGCATTTAGTGTCTCCTTGACATTGTCATCTTTGCTGTTTGTGACACTAATTTAAGCGCGTTGACCTGCTTCGAAAGTTCGAAGGCAGGCGGACAGGGAGCATTAAAGCAGAAGAAATCGCCTTCTAGAGATATTTACAGTAACATGCCAAAAGTAGAGCTTCTTTTGTCAAATGACCACCTGGTACTTGAAGATCCTCATGGATTATTTCATTTGTCTTGAAGCCTGTTAATCTGCATTCTAGAGCCTTTTGATGATTTGatattgttttcctttttttgtatagAAAGGTAAATGTGTCCTTAGAGGTAAGTCTTGCCAAAGAGTAAAGACTCATACTTTTAATACCAGCATATGGCCACAGTAATATTATATGGCCTATAAGACATTTCATGTAAACCTGCATCCCTGCTGTGTTGTGTAATCCAAAAGTATCTATTCAGTACATTCATATATAAATGATTAAAGGGAAGCTATTAAATCTCATAAAACAATAACTGGCCTCCTGATTTTAGTAGAAAATGTCAGGGAAATAGTACTTAATGATACATGATACAATTGTACAATAGCAAAgtgatatttatttaaaagtggCTCTGTTcgtttgctgtttttttatttactaatGTGGCATTAATGAGGAGTAGATTAAAGCAATTACAgtggataataatttttttaaagatttttaaatGATATTTAAATGAATAATTTTTTTACTAGCTTCTCTGCTACAGCACTGATACCTATGTGTACCATATCATGAAATTCAAGGCAACATGATTACGAGTGCGTACTTGAAGATCATAATGTTGTAGAGTTGTGGTAGACACGTAGATATAACTTTAACTATGTAAAATTGCTGCCATACTGTATAATCTGGATTAGCGAGGCATTTGATGTCTTTTCTACTGTAGAAGTCTATGTGTAGGATGAAATTTGTGCACACATTTTTCCTTTTAGCCATAACGTTTGGGGAAACTGGTGATGGCGCTCTGTTAATCTgttagtgtgttttgtgtgaagAGTAGTTATATCtgaaatttgtctttttttttcgcACATATTAAAGGAAGGGATGAAACTTGGAAGGAAATTCTGTACAATGAATAAAACGTCTTGCTCCTTTATTTTACTCAAGGTACTGTGGCGCTACAATGTGCATATTTTTGTGACAAGATGATtaaatgtatgtactgtacgtTTTGCTGTATATACGTCATGTCTTATGCCAACAGAGATGTTTGAAGATGCAAATAAGCTTTGTTTGGATGAGCTGTGCCGTGCTATTTCATTCTCAGGTGGATTCTTGGGCAATAAAGATGATCCCCTTAATGCAAAGCTCA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0005496 steroid binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250404 lncRNA downstream 18167 16772721 ~ 16774271 (-) True G184897
TU250380 lncRNA downstream 29750 16709755 ~ 16762688 (-) True G184877
XR_005637030.1 lncRNA downstream 76121 16711035 ~ 16716317 (-) True LOC120547094
TU250369 lncRNA downstream 116931 16673588 ~ 16675507 (-) True G184869
XR_005636931.1 lncRNA downstream 186521 16596771 ~ 16605917 (-) True LOC120546751
TU250410 lncRNA upstream 1231 16824296 ~ 16824597 (-) True G184903
XR_005637020.1 lncRNA upstream 110628 16933693 ~ 16936181 (-) False LOC120547043
XR_005637021.1 lncRNA upstream 110628 16933693 ~ 16935582 (-) False LOC120547043
TU250501 lncRNA upstream 110628 16933693 ~ 16935625 (-) True LOC120547043
TU250524 lncRNA upstream 346624 17169689 ~ 17170262 (-) True G184989
XM_039781335.1 mRNA downstream 7537 16783049 ~ 16784901 (-) True si:ch211-57i17.5
XM_039781957.1 mRNA downstream 64001 16721239 ~ 16728437 (-) False naga
XM_039781958.1 mRNA downstream 64001 16721239 ~ 16728437 (-) False naga
XM_039781959.1 mRNA downstream 64001 16721239 ~ 16728437 (-) False naga
XM_039781960.1 mRNA downstream 64001 16721239 ~ 16728437 (-) False naga
XM_039782296.1 mRNA upstream 2587 16825652 ~ 16835982 (-) False gpatch2
XM_039782297.1 mRNA upstream 2587 16825652 ~ 16835982 (-) False gpatch2
XM_039782295.1 mRNA upstream 2587 16825652 ~ 16835982 (-) True gpatch2
XM_039782299.1 mRNA upstream 2587 16825652 ~ 16835981 (-) False gpatch2
XM_039782298.1 mRNA upstream 6976 16830041 ~ 16835983 (-) False gpatch2
XR_005636881.1 other downstream 274566 16490650 ~ 16517872 (-) False snap91b
TU250064 other downstream 1000880 15788914 ~ 15791558 (-) False si:dkey-177p2.18
TU249614 other downstream 2213269 14571755 ~ 14579169 (-) False naa30
TU249578 other downstream 2294068 14472201 ~ 14498370 (-) True G184299
TU249319 other downstream 3301310 13481924 ~ 13491128 (-) False mfsd2b
XR_005637006.1 other upstream 6731 16829796 ~ 16835983 (-) False gpatch2
XR_005637059.1 other upstream 938891 17761956 ~ 17762038 (-) True LOC120547356
XR_005637061.1 other upstream 939333 17762398 ~ 17762482 (-) True LOC120547359
XR_005637056.1 other upstream 939668 17762733 ~ 17762808 (-) True LOC120547353
TU250856 other upstream 941740 17764805 ~ 17766640 (-) False zgc:153284

Expression Profile