RNA id: XM_039782391.1


Basic Information

Item Value
RNA id XM_039782391.1
length 1515
RNA type mRNA
GC content 0.48
exon number 8
gene id fam228a
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 16876319 ~ 16880335 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGGGAATGCCACTTTAAACCCAGGACGTTTTGGTGAGCTGAAGTCGTCTCGCGCTGAACGCCGCGTTCGACTTTGCTCTCTTGTGAGCCGGTGTCCTGGCAACGGAAAACCTTCAGACGGCAGAACCACCTGCGCGTGATGAGCTGACCCAAAACCAAAGGAGGTTTACTTCATTTTGGCTGTTTTTCTTCGGACTTATAACCCAAACGTCCTCAAGTAAACGAAGGGATGAGCCCCAAGAAGAACAACAGTGCCAGTGGTGTGATCACCTTCCACACACCATTTCATGTCAGCCTGTTAAAAtcagagGAGTGCATGGCTGTTGGGAAGGACGCTACAGACCGCAGAAAGAGCCCGTCTCACCCGAGCGAGAGGACGAGGAGCATCAGTAAATGTGTAAGAGCAGAGAAAAAGGATGAGTCCTCACCCTCTGGGCCACAGTCGGGAGCCACACAGTACTGGCTCTCTCACACCTCCATCAGGCGACTGCAGGCAAAGATGGAGGATGATAATCAACAGGTGAAAGCAACAATTCAAGCAATACTGGATACAGAAAATGGCTTTATGAAGGAGTTGGAAAGGTTTCTGGGTCAACGGGACGTAACagagctgaggaggagggagctGCTGCACAAGCGCTGGACTGAGCGTGTGTGGTTTCCCCTCCAGAGGAGAGTGAAGAAACATGTGTCCAGCTGCAGCCCTGTGGCGGTCAAGAGGCGCCTGAGTTTATACAGTCACTACCTCCATCAATGCAACAGCAAGCTCAGTACAGCTGACTTAAAGGACCCATTGTACCTTCAGTTACATGAAAGACTGAAGGAGAAGAGAACAGCCCGCTCTTGTGAAGAAGGATGTAAAAGACAAGAAGAGAAGCTGCCTCAGAGTGATCGTCCTCTAAGTGAGTCTGTGACGTCTCAGGCCGACATGCTGCTACACGCCTCATCTAATCATCCGGTCACTGCATCCAGAAAAACTCCAGTGGTGGATGAGACTGAAGGAAGGAAGTCCAGCAGAATCAACACCATACCATGCCGCCGCCTCTTTGCAACTGCCACACCAGATGGAAGGTGCCATCAGACCAGCTGCTGGTTCTCCAGATGTCGGCAACAAGCAGCAAGTGTACAACAACTTCAGTCCTCGCCTACATCCAAATAAAATCCACATTAACCGTAAATCGTCACTTCTATTCCCTTCTAACTACCTTACAGTTTTCCCAGGGacacaacaaagaaaaaacttttactatatgtacattttattcatgccattttcaggattttttggCACACTTAGGGTTAACCTTTGACATTACATTGTACAGTAGTGTGCAACATTGGCCGTGTGCCGGCGTATGTATAACAGGGTGTATGGCTTCATATTAACAAATTCAGACATGTTGTAAGAGACAAGAGTAAAATAGTGTAAATATGAGTATTCCAAAAATCTAACTGTGCCCATTATGTTCACATTTTAGCTGGGTTGTTGGCAACAAGAACACCTTTATCCACAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250341 lncRNA upstream 149929 16724877 ~ 16726392 (+) True G184851
TU250330 lncRNA upstream 190242 16681895 ~ 16686079 (+) True vegfab
TU250247 lncRNA upstream 265941 16595940 ~ 16610380 (+) True G184796
XR_005636882.1 lncRNA upstream 359988 16501866 ~ 16516333 (+) False LOC120546561
TU250222 lncRNA upstream 374434 16495957 ~ 16501887 (+) False LOC120546561
TU250480 lncRNA downstream 53361 16933696 ~ 16956864 (+) True G184948
TU250541 lncRNA downstream 400780 17281115 ~ 17299420 (+) False G184995
TU250533 lncRNA downstream 408516 17288851 ~ 17292275 (+) True G184995
TU250540 lncRNA downstream 408516 17288851 ~ 17291556 (+) False G184995
TU250579 lncRNA downstream 513199 17393534 ~ 17397048 (+) True G185022
XM_039781875.1 mRNA upstream 3213 16858208 ~ 16873108 (+) True gnpat2
XM_039781872.1 mRNA upstream 19708 16837534 ~ 16856613 (+) False lpin1b
XM_039781873.1 mRNA upstream 19708 16841032 ~ 16856613 (+) True lpin1b
XM_039781863.1 mRNA upstream 96386 16765545 ~ 16779935 (+) False si:ch211-57i17.1
XM_039781403.1 mRNA downstream 85131 16965466 ~ 17134416 (+) True nbas
XM_039781404.1 mRNA downstream 85131 16965466 ~ 17134416 (+) False nbas
XM_039781016.1 mRNA downstream 432139 17312474 ~ 17331367 (+) True ppp1r14c
XM_039781338.1 mRNA downstream 470856 17351191 ~ 17375059 (+) True map7b
XM_039781013.1 mRNA downstream 497847 17378182 ~ 17391719 (+) False mtfr2
TU250355 other upstream 43007 16825694 ~ 16833314 (+) True G184859
XR_005636928.1 other upstream 99720 16765545 ~ 16776601 (+) False si:ch211-57i17.1
TU250012 other upstream 474218 16399438 ~ 16402103 (+) False G184628
TU249895 other upstream 908198 15914645 ~ 15968123 (+) False LOC120546249
XR_005636866.1 other upstream 1160037 15694944 ~ 15716284 (+) False dpf3
TU250543 other downstream 413319 17293654 ~ 17295701 (+) True G184996
TU250558 other downstream 461502 17341837 ~ 17365977 (+) False map7b
TU250559 other downstream 461502 17341837 ~ 17365977 (+) False map7b
TU250758 other downstream 788837 17669172 ~ 17672886 (+) False G185145
TU250755 other downstream 802223 17682558 ~ 17686398 (+) True G185145

Expression Profile