RNA id: XM_039782404.1


Basic Information

Item Value
RNA id XM_039782404.1
length 5640
RNA type mRNA
GC content 0.54
exon number 38
gene id itsn2a
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 16880795 ~ 16919678 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCAGTCCACACCCGCCCCGGCTGCTCGATCGGTTCCTCCCTCTCCAGCAGCTTCATTTGCCAGCCTGGATGTCGGATCACCACCGCTATTCTACCGCAACAGaTGTCTGAGAGCTAGCCAGCTGAGTAGAGGACTCACCTCTCTGCCTGTGCTCTCCACCTGCAGCCATGAATGGCGGAGCCAGTGTGTGGGAAATCACTCCAGAGGAGAGGACCAAACACGACAAACAATTTGACACCCTCGTCCCCGTCCTCGGCTATGTCTCAGgaGAACAAGCCAGGAAATTCTTCCTCCAGTCTGGCCTGCCTGCTTCTGTCCTGGCTGAGATCTGGCACCTAGCTGACATGGACTGCGATGGGAAGATGGACAGACAGGAGTTTTCCATCGCTATGAAGCTCATTAAACTCAAACTTCAGGGGCGGAATTTACCATCTGTCTTGCCAATTACCATGAAGCAACCTCCTGTCTCCAATTCTGCTTCAACCATCCCTTCATCAGCACGTTTTGGAATGGGTTCTATGCCAAACCTGTCAATTGGTCTGTCATCCATGTCAGCTATGTCAGCCATGCCCATCCTAACACCCATCCTGGCTAACCCCTCCATGCACTCTGTGCACACATTGGTGCCAACACCTATGACTCTGCCCCTCATCACCTCCCTGGGAAATCCTGGACTCCCCAACGGCAATGTCAACATCCTCAGCCCACCTCTTGTTCCCAACAATGCAGCGCTCCCTCTCTCTGGTTTCTCCTCTCCTATGGCGTTCTCTCCATCCACCGGCATGTCAAAGGCCAACTCTCTTCTGGACCTTGGATCCAGCAGCTCCAATTCTTCCTCCACCACGTCGTTGGCCAGTAACTCTCCAAAGACGGGTGCAAGTGATTGGGCCGTTCCGCAGGGCGCGAGACTCAAGTACCGACAGCAGTTCAACACGCTAGACAAGCTCATGAGTGGCTACTTGTCTGGACCTCAGGTTAGAAATGCGCTGATTGCATCCAACCTGACCCAGACTCAGCTCGCTACCATCTGGACCTTGGCAGATGTGGATAAGGACGGTCAGCTACAAGCTGATGAGTTCATTCTGGCCATGCACCTGGTGGACATGGCTAAAACTGGCCGACCCCTACCCCTCACACTGCCTCAAGACCTGGTCCCTCCATCTCTCAGAGGAGGAATCAAGCCCAGTGAGCTTGTTAATGGAACGGGGCCCTACATAACTCCCTGTGTAATAGACACACCAGAGGTAGAACCTGCACAAAAGACCAAGAGCAGTGTGTCCTTCGAGGACAAGCTGAAGGAAAACTTTGCGCGAGGCAGCGCCGAGCTGGAGAAACGCCGACTGGCTCTGGAGGAAGAGCAGAGAAAGGAAAgggacaggagagagagggaggagagggaggctcATGAAAGGAGGGAAAGGGAGGCAAGGGAGCAGGAGAACCGCAGGAGGCTGGAGGACGAGAGGCGGttggagaggcagagagagatggagagacagagggaggaggagaggctgAGAGAGCTGGAGAGGAAGGAGGCAGCGAAGCAGGAGATGGAGCGCCAACGGAGGGAGGCGTGGGAGCatgggaagagagaggaactgggcaggaggagagagggggagcagGAAGAGATATCCCAACTCAGGGCCAAAAAGAAGAGTCTAGAGCTGGAGCTGGAGGCTGTGGGCAACAAGCACAAGCAGATCTCAGACCGTCTCCGTGACGCTCAGAGCAAGAGGCGGATCCTGAAGGCAGAGGTGGATCTTGTCAATCAGAAGAGGGACGCACGCATCATAGAGATCAACACGTTGCAGCTTCAGCTTGAGGACTGGCAGAGGAAGCTCCTACAGCTGGTCCCAGAACAACAGAGGCTGAACGAGAAGCTGCGAAACATCAACCTCAACAAACCCTCCTCGGTGACTCTGACCTCGATGACCGGGAGTGTGGCGGAAAAAGGAGTGAATTGCCGGAGACTGAAGGACCAGCTGGACACTCTGGAGAGGGAGACCACAGACAAACTGACCCAAATGGAGCAGTACAACAAGGAGCTTAAGGAGCTGAGGGAGAAGCAGGTGAGGCAGCAGGCTGTCCTGGACGACCTGCACAGAGTCAAAGAGGAGAAACTTAGAGAGCTGCGGAGGCGCAGGGAGGAGGAaatggagaggagaaggagggaggaagaagaagaggcagCCAGACAGGCGAAGCTagagcaggagagaaaagagcaggagaagagagagaaggaggaagaggaggcgcGTCAAAGGAGGCTCCTGGAGGAGCAGAGGgccagacagagggaggaggaggagagggaggcacAGGCTCGCCTCCGAACAGCCCAGGAGAAAGcacaggaagaggagagaagaaggagagaggaggaggaggagaagaagaagagggaggaggttgaagaaaggaaacagaaagaggaggaggagaggaggaccaAAGAAGAGCAGGAAAGAGGAGGACAGCAGCCGGTGTTGGTGGCTCAGCGATCCTCCAAGCTGACCACGTATAGAGCTCTGTACTCGTTTGTTGCCCGAAACGCAGATGAGCTGAGTATAGATGCAAGCGGCCTCATAGAGGTGGATGAGAAGACCGTCGGTGAGCCTGGCTGGTTGTGCGGGAGTTACCGTGGAAAAAGGGGCTGGTTCCCCCAGACTTACGCAGAGAAATGTCCTTTCCCCTCTACTACTGAGACAACCCCTTCTTCGCCTGGAAAATCGTCCTGTCCGCCGCCATTACCACTTAACACAGGAGTCCCAGATGGAGAGGTAGCGTGTGACAGCACTGTTCCTGCCCAATCAGACGCTTCACAGATGACTTGCTCCATTGTGCCTAACGTGAAACCTCGCTGCTCTACTAATCTCACTCCTCAGTCCTCCGTCCCTCTGCTGGCTCGAGCCGTCTCCTCGTGGTCAGCCGCCTCAGAAACTCACCTCAACCTCTCCTCTGACGCGGATGACGTCATCACTGCGCTGCTGAGCTTCTCACAGGGTGACGTCATCAGCGTGCTACAGCAGAGGGAAGACTGGTGGTTGGGACAGCTCAACGGGACACGGGGATGGTTCCCCAAAACCTATGTCACTTTGGAGACGGGTGGCAACGCAGATGTGGATGCATTCGACACATCTGACTCTGTTCAGCTAGAGGAGTATGTGGCCTTGTACACTTATGAGAGCCCAGAGGCGGGGGACCTGACGTTTGTTGAGGGAGATGTTGTCatggtgacagagagagaaggagagtggTGGCGAGGATGCATCGGGGATCAGACAGGGGTTTTTCCCTCCAACTATGTCAGACCTGTTGAACCAGAGGCGACAAAACCTGGAGCTCCAATCAAAAAGCCTGCTTTATCTGTTCGGTCAACAGAGATCGCCCAGGCAGTCACCACCGCTGTCACCCCGACGATGCATCAGCTGCGTCTGTCTCCAGGGCAACTGATCGTGGTCCTGGCCAAGAACTCCACCGGCTGGTGGCTCGGGGAACTGCAGGCTCGAGGCAAGAAGCGGCAGAGAGGCTGGTTTCATTCCTCTCACGTCAAGCTCCTCGGCCCCTCCAGCAGCAagtcctctccctcccctctgccAGTGTGCCAAGTTATTGCAATGTACGACTACACCGCTGCTAATCGGGATGAGCTGAGCTTCTCCAAGGGTCAGCTCATCAGCATCCTGGACAAGACCAACCCTGACTGGTGGAAAGGAGACGCCAATGGGGTCACCGGCCTGCTGCCCACCAATTATGTCAAGATGACCACAGAATCAGACCCCAGCCAGAAATGGTGTGCTGACCTGATGACGTTGGACACTATGACGCCtcaggagaggaagaggcagGGTTACATCCACGAGCTCATCCAGACTGAGGAGACCTACgtggaagacttggagctggTTCTAGAGGTCTTTTACAAGCCCATGTCTGAGTCAGGCCGTCTAACAGAAGCTGAGATGGGAGTGATCTTTGTTAACTGGAGGGAGCTGATAATGTGCAACACCAAACTACTCAAGGCGCTGCGGGTCCGTAAAAAGACCGAAGGAGAGAACATGCCGGTCCAGCTGATAGGGGATCTGTTGGCTTCGGAGCTCGCGCACATGCAGCCTTACATCCACTTCTGCTCCTGCCAGCTCAACGCCGCTGCCCTGCTTCAGAGCAAAACCCACAACCAGCCTGACTTTAAAGACTTCCTCAAGAAGATAGCCACTAACTACCGCTGTAAAGGAATGCCACTGTCCAGCTTCCTCCTCAAGCCCATGCAGAGGATCACACGCTACCCTCTGCTCATAAAGAacATCCTGGAGAACACCCCAGATGGTCACGCGGACCGCAGCCCACTGAGAGAAGCTCTGGAGCGGGCCGAGGAGCTGTGCTCTCAGGTCAACGAGGGAGTCCGGGAGAAGGAGAACTCAGACCGGCTGGAGTGGATACAGAGCCACGTGCAGTGTGAGGGAGCTATAGCGCACTTGGTCTTCGACTCGCTGACTAATTGCCTCGGGCCTCGCAAGCTGCTCCACAGCGGTCGGCTTTACAAAACCAAAAGCAGCAGGGAGCTGTGGGCTTTCCTCTTCAATGATTTTCTCCTCCTCACACACAGCGCCAaacccttctcctcctctggttCAGACAAGCTATTCAGCCTCAAGACCAACATACAGCTAAAGATGTACAAAACACCACTGTTTTTAAATGAGGTTTTGGTAAAAATGCCACCGGACCCCTCCAGCGATGAGCCACTCTTCCACGTCTCACACATCGATCGTGTCTACACACTCAAAACGGAGACCTTGAACGAGAGGACAACGTGGGTTCAGAAAATCAAAGCAGCATCTGAACATTTCATACAGacggagaagaaaaagagagagaaggcttACCAAGCACGTTCTCTAAAGACCAGCGGTATAGGCCGACTGCTGGTAACTGTCACTGAAGCCCAGGAGCTCAAAGCCTGTAAACCCAACGGTAAGAGTAATCCGTACTGTGAGCTGACGATGGGGGCTCAGTGCTACACCTCCCGACCGATCAGCGACACTCTGAACCCAAAGTGGAACTTCAACTGCCAGTTCTTCATCAAAGACCTCTACCAGGATGTGCTGTGCATTACTGTGTTTGAGAAAGACCAGTTCTCCCCAGATGATTTCCTGGGTCGTACTGAGGTTCCCGTGGCAACTATAAACAAAGAGATGGAAAGCAAGGGAGCCGCAAATCGCCGCCTACTACTGCATGAGGTCCCTACTGGAGAGGTTTGGGTCAAACTAGACCTACAGCTTTACGAGCCACCCAAATgaggacaacaacaaaaatccaaAACACACGCACCACTTAATGTTATAGTAATGAAGAGAAGACAAATTTGCATAAGcataaacaagcacacacacctaAAAGTGCCTGTTTGTAGCAGTACAAGGGTTGCCTTGAAAAACTCACTTTTACCATCCCTGCCTTATTCTGCCCTGACTCCGGATTTCCACTGCATGCATAACGTCTGcagaccggctccgctgcgtgtctactgcgtgctccgccgtccgtcaatacccaccaggtccagatttgttgcggcacggctgcggccatgactgacagctgatgtcacgtagaatagaaccacaaaa

Function

GO:

id name namespace
GO:0006897 endocytosis biological_process
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250410 lncRNA downstream 56198 16824296 ~ 16824597 (-) True G184903
TU250404 lncRNA downstream 106524 16772721 ~ 16774271 (-) True G184897
TU250380 lncRNA downstream 118107 16709755 ~ 16762688 (-) True G184877
XR_005637030.1 lncRNA downstream 164478 16711035 ~ 16716317 (-) True LOC120547094
TU250369 lncRNA downstream 205288 16673588 ~ 16675507 (-) True G184869
XR_005637020.1 lncRNA upstream 14015 16933693 ~ 16936181 (-) False LOC120547043
XR_005637021.1 lncRNA upstream 14015 16933693 ~ 16935582 (-) False LOC120547043
TU250501 lncRNA upstream 14015 16933693 ~ 16935625 (-) True LOC120547043
TU250524 lncRNA upstream 250011 17169689 ~ 17170262 (-) True G184989
TU250586 lncRNA upstream 346681 17266359 ~ 17269604 (-) True LOC120547341
XM_039782298.1 mRNA downstream 44812 16830041 ~ 16835983 (-) False gpatch2
XM_039782296.1 mRNA downstream 44813 16825652 ~ 16835982 (-) False gpatch2
XM_039782409.1 mRNA upstream 18099 16937777 ~ 16955937 (-) False LOC120547041
XM_039782407.1 mRNA upstream 18099 16937777 ~ 16955937 (-) False LOC120547041
XM_039782408.1 mRNA upstream 18099 16937777 ~ 16955937 (-) False LOC120547041
XM_039782406.1 mRNA upstream 18099 16937777 ~ 16955937 (-) True LOC120547041
XM_039781405.1 mRNA upstream 36570 16956248 ~ 16965367 (-) True ddx1
XR_005637006.1 other downstream 44812 16829796 ~ 16835983 (-) False gpatch2
XR_005636881.1 other downstream 362923 16490650 ~ 16517872 (-) False snap91b
TU250064 other downstream 1089237 15788914 ~ 15791558 (-) False si:dkey-177p2.18
TU249614 other downstream 2301626 14571755 ~ 14579169 (-) False naa30
TU249578 other downstream 2382425 14472201 ~ 14498370 (-) True G184299
XR_005637059.1 other upstream 842278 17761956 ~ 17762038 (-) True LOC120547356
XR_005637061.1 other upstream 842720 17762398 ~ 17762482 (-) True LOC120547359
XR_005637056.1 other upstream 843055 17762733 ~ 17762808 (-) True LOC120547353
TU250856 other upstream 845127 17764805 ~ 17766640 (-) False zgc:153284
TU250853 other upstream 845244 17764922 ~ 17766640 (-) False zgc:153284

Expression Profile