RNA id: XM_039782414.1


Basic Information

Item Value
RNA id XM_039782414.1
length 7091
RNA type mRNA
GC content 0.48
exon number 21
gene id fndc1
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 21617339 ~ 21653568 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGGTGCTGGTGTGTCCCAGCCCTCTGCATCCAGCTGGTGCGTCGCTTCGCAGCAGTAGCGCGCCACACTCACCATGGCTGTAGCCGCAAGCAGGACGCTCTTGGCGCTATTTGTTACGTTTTGCGCACCAGGATGCGGATGGACAGCAGAGAAGCCCCTGCGGTCACACAATGGGAAACAGACATCTGTGGATAAGGGCCTGAGGGAGAGCTGGGAGCCTTCTATTCATCTGGATGGAAGACCTGTGGACCGCTTCGTCATAAACTCCAACAAACCCACAAGGTCTCACCGCTTCACAGAAGTGGGGAAGAACAGTCGCTCTCCTCTACTGGAGGATGTAGacCCTGAATGGGTTAACCTGGATGGCTTTGCTGTTTTGGGCGGTACACCTGTCAGCAACACATCAGCAGGTCCAGCCAGGTCACCACAAACTGCTGCCAGAAATCAGCCCTCTTTACAGCGGGCCACCAGGGTGGACAGAACGGCTCACCCATTAGGCGTGTCTAAGACACGGACACACAGGAGGGCCCCTCAGTCCTCCTCAGGTCCCAGGCAGCCTGAGAGAGCTTTGGCAGGAGCTCCCCCACTGGAAAGGAGACGCCAACACCACATCAAGCCACAATCTGACCAGAGAAAccgaaacacacaaaaactaaCATCTGAGTCCGTTCATGTGGTGTCACTGCAGGCACAGAAAGCCCAGGGCCAGAGCGCAGCCGCCAGCAGAGCAGTCGCAACCAAAACAACCACACCAGtGCCACCGGAGTACGAGGCCCGGGACATCAGTGTCAGGGTCATGTCTCCTCAGTCGGTCCTCATCTCCTGGGTTGACCCTGCTGTTGAGATGGGGAAGGTCGGCCCCGGGGTAATCAGATCCTACACAGTAAGGTACAGGGAGAAGGGTGAGTCAGCACGTTGGGAGTACAAGGACAGCAACCAGAGGAGGATAATGATAGACTCCCTGTCTGCTGATGGCATGTATGAGTTCTCTGTCAGAATCTCTCAGGGAGAAAATAATGGAAAGTGGAGTATCTCCGTCTTTCAGAGGACCCCTGAATCAGCACCATCTGGGCCACCAGAGAACTTCGAGGTCAAGCCACTACGAGGCAAAGGAACTGCTGTCATAGCAACATGGGATCCACCTGAAGAACCCAATGGGAGGATAAGAGAGTACATCCTGTCTTATGCTCCTGCTATGAAGCCATTTGGAATGAAAAGTGTGACGTACCGTGGCACCACAGCCACCATAGATGGCCTCACACCAGGAGACCGGTACATCTTCAAGATCAGAGCCACCAACAGGAGGGGTCAGGGACCACAGAGCAAGGTCCTCAGTGTTGTCATGCCAGGATCCAGCAGCGCTGCCTCTTCGTTCTCAAAAACCAAGGACAGCAGCAGGACTAGCCACACTCTTTCCAAACAGGATACTGACCATGATGAACCTGACCTGCAGTCAACAGATGCGACAGAAGAACCAACCAAGCCCCCTCAGCCACGCCCTGCTGCACCTGTCAACGGCCGTGTACGCCCACTTTCCCAGTCACGCTCCTATCACAGCATCTTCTCCTCTGTAAGGGGCTCAGTCAgaaacacagtgaacagagGGTCGTCCAGAGGAAAAGCTCAAGATAGAGAAGATAAGGAggtagaagaagagaaaaaaccCACAACACCATCTCCGGTAGAAGAGACGACAACCATGGAGGTTGTACCGGAGAGAAAAGAACCAGACAACGATGTTTCCCCTGAATTTGAAGATGAAATGGGATATGATGAAAAGCCTCTGACTACTGTGACCCCCAGCCTCAAAGTTTTGACGCCCTCCCCAACTAAACCTCGTCCCAATCCACCACCCAGAAGGCCCATTAAGATCAGGGTCCATCAAAAACCAGGATCCAAGGCTGCttcttcctcttcatcttcttctacttcatcctcctcatccacttcctcctcttcttctgatTCCTCCACATCTTCTACTTCACCTTCTACAACCTCATTATCCTCCTCCTCACGTATTCAAGAGTCAGCAGCCAGTAGAAAGGACTATGTGGCTTCCACATACCCAGAGAGCAAAGACATCTACGATAAGTCCAGGTTAACACATACAAATCCCTCCTCTACAGTTGTAAAAGAAACCAATTTACAGCAGACAGAGTCTACATCTGTTGGTAGAGATTCGGCTTCAACGGGGCGCACCAATGGGTCTGGGTTGGGCTCTAGATATGGTTACATTCAAAGACGTCCTGGAATTTTCTTTAGAGGGAATTCAACTCGAATGCCGAATGGTTACAAACCTGCAGTCACCTCACAGTTGAATTTACCAAGCAGGACTTTGAACCCAGCAACTTCAAACACACATAGTTCAGCAACATCACAGTCCTCTTTACCAGACAGGACCCCAAACAATGTAACATCACATACTTTCAATTCAGCAACATCCAGGTCCGCTTCAGGAAGTGGAACCCACAGCCAGGCAACATTAGATGCATATAATGTTTACAAATCACAGTCCACATCAGGGTCTCGATCTAAAGGCTCTACAACTTTGCAGAGCTCAGGGACCAATCCATCCACTTCACAGAGCAGCTCAAACCACCCATCCAACAAAGACACAGCAGGCTCTTCTCAGTCAACTTCACACAGAGGATCTCATAGCTCTGCAacttcacacaacacacagagttCGCACACATCACTTGAGCGAGACACAATATTCAGGGAGGGAAATGATGACACTAATTACAAAAGCACAGACGCAGAAGTAACCAAAGTTAAAGAGTCTACTTCAAGCTCTATACCACAACccacagaggagagagggagggaagagaaagaggacgaaGAGGGAAGGGAGATGAGACGTAATGAAAAACCTGTTGTTCCTCGTACTGGAATTAGCCCCTCATTTGCTGAAAAGTTCCCTTGGCTAGCTAGCCGTTACCCAGGCCAGTTTGGTTCAGGGACAAGAGCTTCATCTTCCAGGCAGGATGGTAGGACCCCCTTGACCAGGACATCATCCTCCATGGGGACTGGCAGACCCGTATTGAGGGGGACACCCACGAGGGTTTCAGGGGCCACAGGTGCTGCAGGAGTATCCATGATACAGCAGACTAGTGAAGATCTGAGGACTGACAACTTACTAAAGAATGGGGTAGGAGTGGGTTCAGTTAAGCCTTCTTTGACCAATCAAAATACAGCATCTAGTGACGCTAGAAACCTTGCTACctcatcctcttcatcatcttcctcTTCAGCAGCCACTTCTTCAAACTCTGATTCCCATCATTCCTCAGGTGGACACAGAGACTCAAGTGAGCATGTCCATAGAGGAACCTCTAATGACAATGATAAAGGTCATAATGAAGATTATCTCAGTGAGAGGAGTAGAGACATCAGTGGGAAAAATGATAAAGTTGCAGACCCCACAGCAGCCCAAAAGAATCCTACTATAATTCCAGCTGACCCTAACAGAAACGTAGAGGACAATGATAGTGTGGATAGAGGGGAATCTTTTTCCAGGACAAGACCTGGCTCACCGTCTAATCGTCGTCCTGGTATGGGGGTGAACGGTAAGGTGCGCTCTCCTCTGCTTGCTAACACGCAGTTTGGTGGATCTAGGCTTCCCATCAGACCACAGCCAGCACAGAACTCAAGGCTGGGTTCTTCAAAGTCTGATTCTTCCTCATCATCATCTGACTCCTCTTCTTCCTTAAATGTGCCCCAGCCAGTTTTGACCTCAGATCGTGACATTGGCAGTGGCACTACTGTGACAAAGACAGGCGGATTAATTGGAGGCAACTCCCAGTCTACATCATTGTCCTCAGCATCTTTATCTAGAGGCAACTTTAGGGGCCAGGGGGGAAGGTCTCGCTATCCCATCAGAGGGAAACCAACCAATGGAGGACAACCCAAGCCTGCTAATGGAAACGGTAAAAATGGACGACCCAACCTGACAGCAACAAGTGATAAAGAGACCTCATCCTCTCATGGAACCAGCAAGGCCATTCCTCAAAGGTTTATCACTGGACCTGATGGAACCAAATGGGTGGTAGACTTGGAGAAGGGGGTTCTTATGAACCAGGAAGGACAAATTCTCCAGGACTCCCAGGGCAAACCTAAGAGAGTGGTGGTTGGAGAGGATGGACGCACGATTTTTGACCACATGGGCAGTCCCCTGGTAAACCAGGACGGTATGGCTCTGTTTGGTCACGGCCGAGACAGCCGGCCTGTGGTCAACCCCAAAGACAAGATCCTCATGATTGGAGGGAAACCTGTACTTGGCTTGGACCTTCCTCACCTCAaatccaccaccaccaccaccaccatggTTCCTACCACCACACCTGAACCCACCACCACTGAGTGGATCACAGAAGAGTCCACCACTGCACAACCATACCCATCCTGTCCACCTGGAACCTTCTCCAAAACAGATGAATATGGGTCTCCAGTGCTGGACCCAGAAGGAATATTGGACTGTTATCCAGAAGATGAGCTTTTTGTCCAGACCACCCTGCCACCCACAACCACCAGCACTACAACCACCACCACAGAAATCCCGACTCCGGAGCCAGACACCAGACCCTCCAACCACGGCCCGTCATCTGAGTTTGACCTCAGTGGGAAGAAGCGATTCACAGCTCCCTATGTGAACTACATCCGGAAAGACTTGGCTTCTCCTTGCTCCTTGACGGAGGCTCTGGAGTATCTTCAGGTCGACGTCCTAGAAGACTTAATAGAGAAGGACAGCattttagccaatcagaaacagcctcCCAAGAACAAGCCTCATAACTTCACCGTGGTCGCCATGGAGGGTTGCCACTCATTTATCATCCTGGACTGGGGCCGCCCACTGAAAGATGATATGGTGTCAGGCTACATGGTTCACAGTGCTTCATATGACGATATCCTCAACAATAGATGGTCCTCTCGACTCGCCAGCGGGACACATCTGCCTGTGGAGAATCTCAAACCCAACTCTAGgtACTACTTCAAAGTGCAGGCCAAGAATGTGTTTGGTTTGGGACCCTTCAGCGATACACTCACCTATGTCACAGAATCAGATGATCCTCTTCTCATCGAAAGACCGCCTGGTGGAGAACCAATCTGGATCCCCTTTACCTTCAAGTATAACTCAGCCCACAGCAGCTGTAAGGGCAGCCAGTACGTCAAGCGGACATGGTACAGGAAGTTTGTGGGTGTGGTTTTGTGTAACTCTCTGCGATACAAGATCTTCATGGGAGATGGTCTTAGAGagcCCTTTTACAGCATAGGAGATACATTTGGCCAGGGAGATGACCATTGCCAGTTTGTGGACTCCTACAGGGACGGAAGGACAGGTCCGGCCTACCTCTCAAATAATCTGCCCTCAGCACAAGGATTTTATCGCGCCTATAGACAGGAGCCAGTTTCATTTGGAGTTATTGGCCGACGCACACCCCATCCATTCGTGGGCTGGTATGAATGCGGGGTGCCCATTCCCGGGAAGTGGTAACACAGGAGGAGTAGGAGACATTGTTACCGAGGGTAACCCTtctgcatcctgctgcaggCTCTTACCTTCACTGGTCTTGCCCTTAAAAACAGACTTTTGCCTGCCACAATGAAATGACACCACTACGAATTTATTACAGCTTCACGGAAAGAGAATATAGTACTTTTTAAACAACTTAATGTTTATCATTACAATGCACTTTTTTATATAAAGCAGTCTGTATATGAGGGAAAAAAGAAGCATGTGTGCTCTTGCTTAGTGTAACTCTTGTCTTAAAGTGTCCTTGTACTATTCCCAGCTATCCCAGAGACCTCACCCAGGTCCTCACCCAGTGTTATTTATCTCATCAATAATGCACACACACGGTCAAACCAGTGACATTGGACCAAAGCACAAGTTGCAAAGCAAACTGTAAGAATGGGCACTCAAAGTGTGTATGGGTCTGTTAATTTTTAATCGTGAGATTTGTATTTCATAATGTAACAGCTTCTGAGAgctgctttttgtttgtttatttgtgttcCTAAACCATCaaactgtttgtttgtgtttaacacCTTTTTGGTATTCACCAGAATTCATTAAAAGTTACTGTGTAAGTTTTGTAAGTATACGGACAAAGAATAAAAGATCAAATATTTGCTCAGGAATTGTGAGAGATTGAATAAAGATGTTATGGAAACCACAGCAATCCAAAAAAATGAATCACATCATATTCTCCTGCTGCCACATTCTTTTCTAGCAAAAGCTTCCACACGTGATCCAGATCTACTTAATCAACCTAATGGAAGATTTGAATAACAGAAAAATATTGGTGGAACCAGTTGGCACAGCAACTGTTAAAATCAGatgaaatgttaaaaacaacatattgtaACACACTGCCCCATAAATATGCTAATTGGATTTCTAATGCTTTTGTACTATATTAGATTTTGTTTGaaatcagtggtggaaagtaacacagtacatttactcaagtaattttcttaagtaaagaagttcaTTTGTTTCaatacttgagtatttccattttacgATACTTTAGACTCATACACATAATATTGTACTTTATAATCCATTAaattccatccatcttcgtccgcttatccagtATCGGGTCACGGAGGTAGCAGCTCAATTAAATTTACCTGGCAAATTAAGCTTAGCGTTAGTTCATGCAGGACACGGAAGTCATACGCCTGCTGATTTGAATTATCACTCctatcagacacacaccaaTCCCAGACATTCTCACATCAAGGCGGTCCTTTTTAAATGTGACTCCTTCCTCACTGATCCCTGCTACACTGATGCTGCTTCACTCACTGCTGCTGGCATTGTTTTGCCTCCATccccccagcctccaccttcCTAGTTCAGAGTCCTAACATGACTCAAagtttaaaatggttttcagTGTCTTTCTTTAGGCTCACTCTTTTTTTACCCAGGGTGGTTTCTGCATGGTGCTCCCTGTTTCAGCTTAGCATGCTGCTTGGCTGGTCCAGGGAGCATTAGGAAGAGCGGAGCCTTCAGCACCAAGCATaactgtattttcatttgttgcaataaatggttaaatcta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252261 lncRNA upstream 74558 21540588 ~ 21542781 (+) True G186297
TU252179 lncRNA upstream 142035 21474552 ~ 21475304 (+) True G186220
TU252169 lncRNA upstream 268758 21347944 ~ 21348581 (+) True G186210
TU252056 lncRNA upstream 444700 21170982 ~ 21172639 (+) False gtf2h5
XR_005636932.1 lncRNA downstream 92013 21745581 ~ 21746554 (+) True LOC120546760
XR_005637027.1 lncRNA downstream 179380 21832948 ~ 21833782 (+) True LOC120547080
TU252574 lncRNA downstream 640874 22294442 ~ 22294697 (+) True G186452
TU252572 lncRNA downstream 647216 22300784 ~ 22301483 (+) False lin28b
TU252644 lncRNA downstream 882091 22535659 ~ 22537716 (+) True G186506
XM_039782268.1 mRNA upstream 92037 21512574 ~ 21525302 (+) True drc1
XM_039782681.1 mRNA upstream 110515 21501751 ~ 21506824 (+) False ostm1
XM_039782680.1 mRNA upstream 110515 21501752 ~ 21506824 (+) True ostm1
XM_039782671.1 mRNA upstream 143317 21457561 ~ 21474022 (+) True snx3
XM_039782902.1 mRNA upstream 294253 21319339 ~ 21323086 (+) False sesn1
XM_039781903.1 mRNA downstream 26954 21680522 ~ 21686917 (+) True LOC120546740
XM_039782270.1 mRNA downstream 33712 21687280 ~ 21693126 (+) True acat2
XM_039781938.1 mRNA downstream 70074 21723642 ~ 21727342 (+) True LOC120546757
XM_039781940.1 mRNA downstream 97724 21751292 ~ 21754890 (+) True LOC120546759
XM_039781941.1 mRNA downstream 98016 21751584 ~ 21754890 (+) False LOC120546759
TU251678 other upstream 1757134 19856735 ~ 19860205 (+) False kif25
TU251521 other upstream 1969183 19634283 ~ 19648156 (+) False acp1
XR_005636888.1 other upstream 2078031 19429595 ~ 19539308 (+) False nhsl1b
TU252459 other downstream 291175 21944743 ~ 21947000 (+) True erh
TU252499 other downstream 332211 21985779 ~ 22065589 (+) True G186394
XR_005636956.1 other downstream 1924810 23578378 ~ 23589689 (+) True nfkbie
XR_005636955.1 other downstream 1924810 23578378 ~ 23588514 (+) False nfkbie
TU253325 other downstream 2426035 24079603 ~ 24083104 (+) True G186975

Expression Profile