RNA id: XM_039782427.1


Basic Information

Item Value
RNA id XM_039782427.1
length 1603
RNA type mRNA
GC content 0.41
exon number 8
gene id LOC120547054
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 34055980 ~ 34065783 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctttacataaaataaaactctGCTTTGAAAAGAGACAAACATCCTGATGAAAATGAAACTAAATGTGTGGTTTCTGGTCTGGCCTGACGAAGGGAAATTTATGTTATGTGGGGGAGGATCACTTATTGATATTATCAACGGCAACATAAATTACAACACTTCGTCCAAGTGTTATATTTGGTCTTTCTTGCTCACTTTGTTCCAGTACAACAACGCAGGTACGAAGTTTCCATTATCCTCAAATGTGTAACAAAATTGTGCTTCCTGTGTTTGTGCTTCCTGTGTTTTTGAAAGTATTGTCAGTATTGTACCTATTTCAGATCCTAGTTAGTCGATATTTAAGCTCTTCTGACTCCTTATGAGCCTGTGTATCCTCTTAGATCGGCTGACTGTGGCCTGCTGGTCGTACCCAGAGTCTGACTGGTGACTAAGAACTAAGAAGTATCTGGCTTTTGCAGTCCGGAACACCAAACCCTGGAATGACCTTCCTGCAGAAATTAGgattttggagaaaaaaagaacgTAAAGAAACTGAAGCTCCTCCATTTCTCAGCAAACCATGGAGGGAAATAAACTGGGGAGACAACCAGAGGGATCTGCAGTATGTGAAGGACTACAGACCTCAGACTGATGGCCAGCAGCTCAGGATTCTCCTTCATGGACATATTGGAGCTGGAAAATCCAGTTTCATCAACTCTGTCCAAAGTGTCTTACAAGGCAGAATGTACACCCAGGCTTTGGCAGACAAAACTTTTCATGACTGTTTCACCAAAGGGTACACAACCTACAATATCCAAAAAGACCGAGACACCTTTTACCCTTTTGTGTTCAATGACATAATGGGCCTGGCCAAGGACAAAGGTGTCCAAGTGGACGATATCAAACTGGCTTTGAAGGGACACGTGAAGGACAATTACAGGTTCAATCGTGATTCTAGGATGTCAGAGGACGACCCATTCTACATCAACCATCCAACTGACAACGACAAAGTGCATGTTCTGGTTTGTGTCATTGATGCCAACACGGTAACTTGCATGCACAACGAAATTGAAGAAAAGATTCGCAACATCAGGAAGGAAGCCACTCACCTGAGTATTCCTCAAGTGGCCATTCTCACCAAGATTGATGAGACCTGTCCTGAAATCAAAGAAGATTTACAGAATGTCTACAAGGTCAATTACCTGAAGGAAAAGATGGAGCAATTCAGTGTAAATGTGGGAATTCCCATGAACTGCATCTTCCCTGTGAAGAACTACGATCGAGAAATCGACCTCAACAGTGACGTTGACTCACTCATCCTGAGCGCCCTGAAACACATCATCAACTTTGGAGAGGACTGCATCAACTTCCATAAGAGTCAGCAACTTCGTGCTATGTCATATCAAAATAACAATATGTGACATTAACCAGCAGGATTTCTAACAATCTATGATTTATTACTTTTTGCTTGCCAcatttgtatgttttattttaaagggcTCATATTATACTAATTTGCATGTTCATAATTGTGTTTACAGGTTGTAcaagaataggtttatgtggtttaattttcagaaaacaccatatatttgttgtactgcacattgctgcagctcctctt

Function

GO: NA

KEGG:

id description
ko04064 NF-kappa B signaling pathway
ko04062 Chemokine signaling pathway
ko05340 Primary immunodeficiency

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256710 lncRNA upstream 8973 34046611 ~ 34047007 (+) True G189439
TU256504 lncRNA upstream 111396 33886415 ~ 33944584 (+) True G189294
TU256503 lncRNA upstream 112418 33886415 ~ 33943562 (+) False G189294
TU256499 lncRNA upstream 112418 33910022 ~ 33943562 (+) False G189294
TU256580 lncRNA upstream 117631 33938055 ~ 33938349 (+) True G189352
XR_005636834.1 lncRNA downstream 3818 34069601 ~ 34071742 (+) True LOC120546208
XR_005637028.1 lncRNA downstream 14476 34080259 ~ 34096714 (+) True LOC120547081
TU256727 lncRNA downstream 35728 34101511 ~ 34102289 (+) True G189450
XR_005636863.1 lncRNA downstream 36960 34102743 ~ 34104308 (+) True LOC120546319
XR_005636885.1 lncRNA downstream 68550 34134333 ~ 34137040 (+) False LOC120546565
XM_039782426.1 mRNA upstream 3339 34037056 ~ 34052641 (+) True LOC120547053
XM_039782425.1 mRNA upstream 3339 34038562 ~ 34052641 (+) False LOC120547053
XM_039781374.1 mRNA upstream 20027 34018631 ~ 34035953 (+) True LOC120546447
XM_039781947.1 mRNA upstream 42532 34008396 ~ 34013448 (+) False LOC120546767
XM_039781946.1 mRNA upstream 42532 34010940 ~ 34013448 (+) True LOC120546767
XM_039781377.1 mRNA downstream 39612 34105395 ~ 34110113 (+) True LOC120546448
XM_039781552.1 mRNA downstream 44296 34110079 ~ 34173614 (+) True LOC120546562
XM_039781378.1 mRNA downstream 118406 34184189 ~ 34187555 (+) True LOC120546449
XM_039781379.1 mRNA downstream 252542 34318325 ~ 34333003 (+) True LOC120546450
XM_039781554.1 mRNA downstream 277785 34343568 ~ 34354117 (+) True LOC120546567
TU256520 other upstream 69504 33965583 ~ 33986476 (+) True G189305
TU256522 other upstream 116593 33932064 ~ 33939387 (+) True G189307
TU256516 other upstream 195577 33859146 ~ 33860403 (+) False LOC120546766
TU256542 other upstream 284607 33765501 ~ 33771373 (+) False LOC120546444
XR_005637066.1 other upstream 292354 33763465 ~ 33763626 (+) True LOC120547364
TU256875 other downstream 397125 34462908 ~ 34464897 (+) True G189544
TU256872 other downstream 417081 34482864 ~ 34503755 (+) True G189541
TU256921 other downstream 420641 34486424 ~ 34487177 (+) True G189570
XR_005637062.1 other downstream 453505 34519288 ~ 34519426 (+) True LOC120547360
XR_005637063.1 other downstream 459105 34524888 ~ 34525026 (+) True LOC120547361

Expression Profile