RNA id: XM_039782440.1


Basic Information

Item Value
RNA id XM_039782440.1
length 4368
RNA type mRNA
GC content 0.51
exon number 16
gene id ankrd6b
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 3773170 ~ 3822913 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTGAATCCACTGGATGGCTTATTCGGTTTACATGGCTGCTTTCTGTACTGCGTACTGACGCGACGAGCTCTGCGCTGGGACTCCGCTCACTGCAATTACGTTCCAACTCCCAAAGAAATCTGCGATATTCAAATAATCAGCTGAGATGATGAAGGGGAGGAATCCTGGCTGGTTGTGGACTTTGTAGCAACAGAAGAAGTAGCAGCTTTCTACCTCCTGTCTGACACGTCTGTCTGCAGCCGAGCTCACCATGAGTTAAAGAGCACTGCAGAGCATCGCCACCACTGCCTCCCCCCCCGCCTGGAGCCCCGTGTCTGACCGCGACAGCAGCTTCATGAGCCAGCAGGATGCGGCTGAGGTCCTCGCACTCTCCGAGCGCCTCCTCATAGCTTCACACAAGGGGCAAGCTGACAATGTGGTCCAGCTCATCAACAAGGGCGCAAAAGTAGCCGTCACCAAGtaTGGCAGAAGCCCCCTGCACCTGGCTGCCTACAAAGGCCACACTGAGGTCGTGCGTATCCTGCTCAAAGCTGGCTGCGACCTGGACATCCAAGACGATGGCGAGCAGACGGCGCTACAGCGGGCTGCTGTGGTGGGAAACAGCGATGTCATCAGCGCTCTCATCCAGGAAGGGTGTGCACCAGACAGACAGGACAAGGAAGGCAACACAGCTCTCCACGAGGTGTCCTGGCACGGCTTCAGCCAGTCTGTCAAGGTGCTGGTGAAAGCTGGAGCCAACGTTCACGCTAAAAACAAGGCAGGACACACAGCCCTCCACCTTGCGTGTCAGAACGGTCACGCTCAGAGCGCCAGGGTTCTGCTCCTGGGAGGCTCCAGGCCCGACACCACAAACCATGCGGGGGATACGTGTCTGCATGTGGCGGCCCGCTACAACCACGTGGCTGTGATCCGCATCCTGCTGGGAGCCTTCTGCTCCGTGTCAGAGAAGAACCTGgctgggGACACGCCGCTACACGTGGCTGCTGCTCTGAATCATAAGAAGACGGTGCGTCTGCTGCTGGAGGCTGGGGCAGACAGCCACATCTGCAACAATgcAGGTCACACAGCTTTGGACCAGGCCAGAGAAAACAACAACCCAGACGTGGCTCTCCTGCTGACCAAAGCCCCCCAGGTGCAGAGCTTTGTGCGTGGCCGGAgtgtgaggaagaggagagacaaGCTGAAGGCCGAGGGCCGAGCTCAGTCTGTGCCCAGAGATGAGATGCTGCCCTGTAAGGACAGCGCCTCTGCTGCAGAGGACACCCAGAGCAGTGACCGAGCTGGCTGCAAACACGCCGAGGTGTCCCCGATCAACGCCAGGAGGGGACGGAACAGGAAGCACAAAGAGAAACCACCTTTGTCCGACCCCCCGCGCCGCAGAGAGACCAGGCACAGCGAGAGGAAATGCAAACTGCCAGGAGCATCCATCCCCCCACATAACTATAAAGCCTATCAGCTGTACACACTGTACCGCGGCAAAGACGGAAAGATCATGCAGGCTCCTCTGAATGGCTGCCGCTGTGAACCTCTGATCAGTAAACTGGAGAACCAGCTGGAGGCCACCAAGGAGGAGATGAAGACTGAAATCCACACGGTCCAAGACCTGATGAACAGCAAGATGGGTCAGCTGGACCGTAAGAACAAACACCAGATCCGAGCTCTGGATAAGATGACAGTGGAGAGGGTTTCAGCAGAGAGGAGCGAGTGTGTGCAGAGGATCGAGCAATGGGCCCTGCAGGAGAGGCTGGAGGCAGAGAAGAGACAGGTGTCCCTGGTCCGTGAGCTGAAGAGTTGGTGTCTGTCCAAGCTGCAGAACATGGATCTTGGCTTGAAGGAGGAGCCCGGCAGCACCAGGCTGCAGCGCTGCTCGTCTGTGGCCGAGGGCCTGGATGGAGCCGGCCTCACTGTGCTGCCCTCTGGCTCCCAGTGCCCGGAGCTCCACACCAGCCCTGTCCTCCTGTCCTCCAGCCAGGAGCAGCCCAGTGTGGCCGAGGGCGGCTCAGCCAACCACTACTTTGTGGTTCATGTGGAGAGCTCTCCAGACGGCGATAAGAATCAGAATGCAGCAGCCAGGAGCCCGCTGTCAGCTGTCCCGGTGGTTCGGCCCAAGGAGCGTCCTGTGCTCTGTGTCGACTCCCAGAGGAAGAAGCAGGACCTGCAGGATGGGGACATGGTGGAGTATGGTGCGCGGGGGGGCAGAAGCCTGTCTCCGGCCGCAGAGCGCCGCTGCAGCCGCAGGACCGAAGCCGGCCTCAGGGACAGGGAGCGAGGCCGGGACAGAGGTAAGCTCCACAAGAAGCATTTCCGGGGAAGGACTAAGTCCAGAGGGGCCACAGGGGCTACAGGGGCTACGGGGGCCACAGAGGCCCAAACTCTGGAGATGTTTGGAGAGCAGCCCAGTGAACCCTCCTTTGCCCAGGAGAAGGACAACATGCACGCTCTGGAGGTGACCCAGTACTTCTTCGAGGCGGTGTCGACGCAGATGGAGCGCTGGTACGAGAGGAAGGTGCAGGAGGCGCGCTGGCAGGCGGAGCAGCGGGCGCAGGCCGACAGAGCTGCTCTCACCCAGAGGATCAGCTACCTGGAGGACGAGCTGCGCATGCTGAGGACTAACAGACACGAGGACTGCTAACACACAGTGCATCTGTCAGCACCAGGCTGCATGTGGACATGTGGACACACACTCCGGCAGGAAATATGGCAGCTCTCGTTTGTGTGGAACTAAACCAGTAGATATAAAGCTGTGTGTCAAAAAATTTATCTAATGTGCCATTTTAAGATAGATCCACTAAATCATGTCAAAcagcaatacacacacacacacacacgcagagtaGAGGCACCAATGATGGTCCTCTCTTCTAACAGAATATGAACttacagtaaaatgtaatgATCTTGTGTTACTGTTACTTTGGAGGAAACACACCTGCCAAAAAACTAGATGAACAGCTGTtgagatagagagacacacacacacacacacacacacagcagagaaatgtGTGACCGTGTGGTGGATGATGTGCGTGATGTGTCCCTGGATGGTGGTGAAAGCTGTGTGATGGAGGGATTACAGTAGAATAAGAGGTTAGTATCTGCCTGCTGCTTATTTATGAGAATATAGCTGAACTGACACTGTATATAATAACCCCTGAAGGCTTTcctcttcagtttttttttaatcagaatcagaaaatttAGACTTTTAcagtgtttacatttttttttttttataaactgatcaaattttcaaaagaaacaaattaattaaatcaGCATTtcaaaaaatttcaaaatatattatatatcctTATCTTGATAAGATGTAAATGTTTGGTATTCCGTTTCTCATATGTCCATCTCACATTTAATTAGTCTCCTGCGTTAACATGAACAGTTCTCATTTCATGATCACTTTAATTTAAAGATGCGTGCCACCTTAAATCCAGGGCCACTGAGACTAAAGCAGCATATAAGATGTGCTGTCTCCTTTTCCTTCATTTCAGTTAATATTAACAATACATCAAATCCCTATGTTATTTTGACTGCAAAAGGGATGACTTTAGCTGACAATTAAACACTGTAAAAGTGTAGAATTATTCCATTGGCACTCTCCAGACCAAATAACAAGCCTTAACATTTACTGTCATAATACACACTGTCTCCTCACCAGTTCCTTTGGCTGACAGTGTATTAACTCCAGTGTcttagtgagtgtgtgagaggagGAACGTGTTTACAGTCCACTGACAAGGACAGTTAGAGGAGATGCAACACTCTGCACACTCTTTCTGTTACTGCATACCAGCAGAGGATCTCTACTACATTCAAAACTGGAGCTGCAACATTTAGGGGATTCAGCAGTTAGTCCatcaaaagaaaatgaatcagcaactatttAGATAATCCAGTAACTATTTCAGTCTTAAAGCAACAACACGACAACACCTGATTGCAGTCCATTGTGAGGATTGGCTGCTTCTGTCCCTTTAATATCATTATTCACTTTTGTCTGGAGTTTCACAGAACAACCGATGAATGGATAATGAAATAATGATGAGTTGCAGCCCTGGAGGACACCAAACTAAAGCGTGTCCCGGCCCTGAACAGTCCACCGTTTCTAATCTCGTCTCCCTGCGTGCCGAGGCCAGTCCTGATGGAAAACATCACTTCTGTCATGTGGCATTGTTACTGTCTGTcactagactgtctgtctgatgtAGTGACCGTCTGTCTGATGTAGTGACTGTCTGCTCAACATGTTGCTTGGTTATACATGAATAACTCTGTGGATATGAATAATGCACTGTGTATGATGATGCCAGAAGacatattttgtattaaaaaaaaaaagatcattctGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246659 lncRNA downstream 17902 3752653 ~ 3755268 (-) False G182004
TU246657 lncRNA downstream 17902 3752732 ~ 3755268 (-) True G182004
TU246559 lncRNA downstream 113620 3658371 ~ 3659550 (-) True G181932
TU246553 lncRNA downstream 120564 3651795 ~ 3652606 (-) True G181929
TU246546 lncRNA downstream 125383 3646853 ~ 3647787 (-) True G181922
TU246674 lncRNA upstream 7837 3830750 ~ 3831397 (-) True G182018
TU246683 lncRNA upstream 43104 3866017 ~ 3866360 (-) True G182027
TU246684 lncRNA upstream 44951 3867864 ~ 3869699 (-) True G182028
TU246768 lncRNA upstream 269510 4092423 ~ 4092630 (-) True G182099
TU246774 lncRNA upstream 279862 4102775 ~ 4103572 (-) True G182105
XM_039782303.1 mRNA downstream 94573 3661553 ~ 3678597 (-) True casp8ap2
XM_039782865.1 mRNA downstream 128600 3640175 ~ 3644570 (-) True gja10b
XM_039782644.1 mRNA downstream 1159635 2590462 ~ 2613535 (-) True ufl1
XM_039781876.1 mRNA downstream 1366015 2400734 ~ 2407155 (-) True col10a1b
XM_039782382.1 mRNA downstream 1389085 2359433 ~ 2384085 (-) True frk
XM_039782384.1 mRNA upstream 52247 3875160 ~ 3884613 (-) True LOC120547034
XM_039782383.1 mRNA upstream 62052 3884965 ~ 3890650 (-) True ephx1
XM_039782877.1 mRNA upstream 68724 3891637 ~ 3893175 (-) True srp9
XM_039782648.1 mRNA upstream 354660 4177573 ~ 4184958 (-) True LOC120547172
XM_039782653.1 mRNA upstream 372230 4195143 ~ 4196360 (-) True LOC120547177
TU246538 other downstream 162841 3608847 ~ 3610329 (-) True G181919
TU246464 other downstream 397062 3375765 ~ 3376108 (-) True G181860
unassigned_transcript_1007 other downstream 2918947 854151 ~ 854223 (-) True trnav-aac_19
unassigned_transcript_1005 other downstream 2925337 847762 ~ 847833 (-) True trnad-guc_21
unassigned_transcript_1002 other downstream 2931145 841954 ~ 842025 (-) True trnad-guc_20
TU246718 other upstream 68729 3891642 ~ 3893159 (-) False srp9
TU246726 other upstream 83704 3906617 ~ 3912279 (-) True G182061
TU246722 other upstream 85634 3908547 ~ 3914015 (-) True G182059
TU246771 other upstream 277097 4100010 ~ 4100480 (-) True G182102
unassigned_transcript_1013 other upstream 325994 4148907 ~ 4148978 (-) True trnav-aac_20

Expression Profile