RNA id: XM_039782453.1


Basic Information

Item Value
RNA id XM_039782453.1
length 1239
RNA type mRNA
GC content 0.38
exon number 3
gene id ttc32
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 22787092 ~ 22790555 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtgacgtcacatccgcaGTTGGAAAAACACTTCGACCCATGGAGGAAGATAATAATCCCCAAATACTTGAATATGCTCACTCTGagtttaaaaaacataattttaaacGGGCAGAAGAAATGTACTCAAAGTTTATCTCTTCCTGCTTACAGTCCAGGGAATGTGACGCCAGTGATTTGGCCATTGCTTATAACAACCGCGGACAGATAAAGTACCTCCGGGTGGATTTTCATGAAGCAGTGGAGGACTACACCTCCGCAATACAGACTGACAGCCGGTTTGAAACACCTTTCTACAACAGAGGACTCATCCACTATAGACTAGGTTTTTTCGACGATGCCAAGAGTGACTTCCAGCAAGCATTAAAGCTCAATCCAGATTTTGAAGATGCCAAAGTGAGCCTGCAACAGACACTTCTGGACCAGCAGCACAAGATAAATAGGGGATACTGACAGTTTCATAAACTTTAGagtacatattttatatatcctGAAATCTTTTGACTAAAGAAAAGATGTATATTCTGTCAAGTGTTGTCATTTTACTTTAATTTATGCACAGCTGTCATATAACAAATTAAGATGTCATTATTTGATCTGAAAATGAACACTTTGATTATTTGAAGATATCAGCATGAAGATAAACCGAGAAGaaaatcacacacaacataaagcAATCTGCACTGGCAACAACACCAGTGAAAATCAAACTCAACACATGAAAGGAAGAAGACATCCCACTGTACGACGTACAGTATATGGATTTTTGCTAAGCAGAGCATTGACAATTCCTTTTCTGCACTGACTCGAGACTCTTCCAGtcggaaaaaaatataatggcCTCATAAATGAAAGTATATCATTGTATAAGTCTGTGAGTGGACAACGCAGTCTAATTGACCCGGGCGCACTAGGTAAAACGATGATCTTGGGTTTTACTGTCAGTAATAAATGTTAGTGCACCATCTAGCAGACACTAGGAGGAGGGTTGTGATGACTATAAACAAACCACAATCAAGTGTTGGGATACAGTCATGGTAAGAAGTCTCTCAGCTGCAAAGGTAAAACCTGTTTTGTGTCTTAAATTGAAGCCCGGTCACAGTTAACATCTTTCTACAAGGTGGTGTATGGTTTTAAGGAAAGGTAGTCCCCCTCTTTTGAAATTTCTtgaataattaatatataaatatatatatacaaaacataAATGTATATATGAACAATAAATTGCTTTATCACG

Function

GO: NA

KEGG:

id description
K24946 TTC32; tetratricopeptide repeat protein 32

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252735 lncRNA upstream 67199 22716970 ~ 22719893 (+) True G186578
TU252644 lncRNA upstream 249376 22535659 ~ 22537716 (+) True G186506
TU252572 lncRNA upstream 485609 22300784 ~ 22301483 (+) False lin28b
TU252574 lncRNA upstream 492395 22294442 ~ 22294697 (+) True G186452
XR_005637027.1 lncRNA upstream 953310 21832948 ~ 21833782 (+) True LOC120547080
TU252803 lncRNA downstream 9180 22799735 ~ 22800058 (+) True G186622
TU252810 lncRNA downstream 18665 22809220 ~ 22809461 (+) False kcns3b
TU252843 lncRNA downstream 56317 22846872 ~ 22847674 (+) True G186641
TU252914 lncRNA downstream 171496 22962051 ~ 22966010 (+) True si:ch211-22i13.2
TU252933 lncRNA downstream 226402 23016957 ~ 23018800 (+) True G186697
XM_039781344.1 mRNA upstream 5299 22775637 ~ 22781793 (+) True matn3a
XM_039781203.1 mRNA upstream 12460 22762357 ~ 22774632 (+) True laptm4a
XM_039781204.1 mRNA upstream 25534 22756018 ~ 22761558 (+) True LOC120546327
XM_039781191.1 mRNA upstream 34330 22722382 ~ 22752762 (+) False pum2
XM_039782452.1 mRNA downstream 165 22790720 ~ 22795363 (+) True zpax1
XM_039782451.1 mRNA downstream 377 22790932 ~ 22795363 (+) False zpax1
XM_039781077.1 mRNA downstream 17324 22807879 ~ 22810520 (+) True kcns3b
XM_039781345.1 mRNA downstream 57543 22848098 ~ 22856575 (+) True ttbk2b
XM_039781478.1 mRNA downstream 70253 22860808 ~ 22875214 (+) True znf106b
TU252499 other upstream 721503 21985779 ~ 22065589 (+) True G186394
TU252459 other upstream 840092 21944743 ~ 21947000 (+) True erh
TU251678 other upstream 2926887 19856735 ~ 19860205 (+) False kif25
TU251521 other upstream 3138936 19634283 ~ 19648156 (+) False acp1
XR_005636890.1 other upstream 3247884 19429596 ~ 19539208 (+) False nhsl1b
XR_005636956.1 other downstream 787823 23578378 ~ 23589689 (+) True nfkbie
XR_005636955.1 other downstream 787823 23578378 ~ 23588514 (+) False nfkbie
TU253325 other downstream 1289048 24079603 ~ 24083104 (+) True G186975
TU253479 other downstream 1716358 24506913 ~ 24507813 (+) True G187094
TU253601 other downstream 2213464 25004019 ~ 25009407 (+) False lama2

Expression Profile