RNA id: XM_039782498.1


Basic Information

Item Value
RNA id XM_039782498.1
length 5052
RNA type mRNA
GC content 0.50
exon number 7
gene id LOC120547088
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 22541406 ~ 22553765 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAGAGAGTTTTGTTCAGCGGCGGAGCCTCCAGCCCGGAGCGCACGCATGTTCAGTGGACTCGAATGGTGTGAAGCCCCAGATGAGGGACTCAGGCGTCCGGAATGACAGTCGCTGTCACCGTGAGTGACAGCATTCACTCTAAGCTACTCCGCTAAAAAGCCTCCAGCTGACACCAATACTGATCCGGATCGGATCCAGCCGGACCAGGACTATGCCAGAGATGGAGAAAGGGAGACCACCGGAAAATAAACGCAGCAGGAAACCTGCGCACCCTGTGAAGAGGGAGATCAACCAGGAGATGAAGACGTTTGCAGAAAGCACAATGAACGAGCTTCTGGGATGGTACGGCTACGACAAGGTAGACCTCAGAGACTCAGAGGCCAACGAGATCAGAAACTACAGAGAGAGGCGTCACCATGTGTCTGTGCTAAAAGAGAACTCATTGCCAAAATCCAAGAGCTTGGACACCAAAGTCAGTCACTCAGTCCTCGCCATGAAGAGTGGAGAGAGAGTGTCCAGTgttccctcctcttcatcctcctcttcctcaacaAGTTCAACCCTGACCACCCCCAAGGAGCACACAAGTGCCCCTGTCATTGTCCCCCTGATAAAGCCATCAGCAGTGGAAGATGTACAGAATGTGCAGATAGTGTGTGTTTGGTGCCAGAAAGAAGGGGTAAAACGCTACTCTCTATGTATGGGTTCAGAACTCAAGAGCTTCTGCAGCGAGAAGTGCTTTGCCGCCTGCAGACGGGCCTACTTCAAACGCAATAAGGCCAGAGATGAAGACCTCCACGGTGAGAGATCCCCTCAGCACCCCCATACAGAGGACTCGCCTAGACTGTTGTTAAAGATAAACAGCAATGTCAGAGTATGTGATTGGTGCAAGCATGTCCGTCACACTAAAGAATACCTGGACTTTGGGTCTGGCGAGGAACGACTCCAGTTCTGCAGCACCAAGTGTCTGAATCAGTACAAGATGGATGTTTTCTACAGAGAAGCCCGTGCAGCTCTCACCAGCTCTAGCCCAAGCAGAACCAGCCAGGAGGGGAGGACGGAGACCGTTGTGGCCGGGCAAAAGCTACTCACTCCTGAGTcttggagcagcagcagcagtgcaggAGAAGCTCGTCACAGAAACGTTTCCCCTAGAGGGCCTACGCCAATCCATGGATCAGCAGAATCCACCTCCATGTCCCCCTCAGAGGCATCCTCTTCTAATTCCAAGATCCCTGTATCTGGGATGAGGACCCTGGAGAGACCCATCCAGCCTCCTGCCCCAGCTATGTCACCCCACCCTGCTCCCCTTCATCCTCCACCTCATCCTCGTCCCCCTCTGGAACATCAGCCGGTACCTCACATCCCAATGACCTTCATCAGGCCTCCTCTTCATGCTCAGGGCCTGAAAAGCCCCCTTACCAACCACCCCAGACACCCAGGCCCTCCTTCAAGCCCTATCCACAGACCCCCCCACTCTCCTCACCTGCAGCACCCAAACTCTTCCATGAATCCCCCTGGACTGATGCATCCCTTTCCAGGAGCCTACTTCCCTGGCTTGCACTCCCCTCCTCTGAACATGATGCCAAGAGGTCCTGTCCCAATGCCTCCCATGATGAACTATGGTATTCCTTCCTTTAGCCCTCTTCTGCCCCATCCTACTATCCTGGTGCCTTATCCCATTATTGTTCCCCTACCTGTCCCCATACCCATTCCTATCCTCATTCCAGTCCCTTCTAAGGCAACCGTAGAAACTCCAAGTCACAGTGGTGTTATCCAGTCTGTGCCAGAGGGGGTAGACAGGGGTAGATCCAGGGCTACTGGGCCGCCACCTCAAGGGATCCCTGAAGGCGACAGCAGATTGGTTGCCAACAAATTGGGTGGAACGTTGACTCAAGGTCTCCCCTCACCAAGTGTCCCCAACACAGATTGGGTTAAATCAGAGAAGCCATTCCCATCCCCAACATCCACACCCCACAGTGGAGCATCCTCCCCCAGAGCACAGTACAGTGAATCCCCCTGCTCAGCCTCAGGGTCAGAGGGGCTGACAGACTATAAGCAGCAACAGTCAGAGCGACAAGTCATCCAAAGGGTTTTCCAAAGGACCCAAGTGAAACCCGGTGCCAATGGAGTGATGGACCTATCAGGGCTGGGAGAGTCAGGAACTGGGCAGGGTACCAGATCAGGTCTCCACGACATCATCAGACCCACCCCTCCTCTACTACAGTCCCCTTTACATGACACTGTCTACCACCGCCAGGACTCCCACACGCCAACTTCACACACCCCACCCAGCCCCACAGGGAGCAGCCATCCATATGATGCCACATCCCCTGCCCTGAAATCTCAGGACCACAGTCCAAATGGGATGTCCTCCTCATCCATACCTGCCAGTCCTGACTCCTCCCTACCCCAGAGAGTACCAGCACCACCCCCAGACCCTGTGCTCAGTGAGCTCGAGGCCATCAAAGAAAACAAGTGCTCTGTTGTTGGCGCAGTGCGGGTTGAGGgcccagtcagtcagtcagaagAGCCCTTAGCAGTAGTCGGGGAGGTAGGAGAGGACCCCCATGTTCCTGATGAGGACCATGCCTATGCCCTGCCCACAGCGCCAAAGACAGGGGGGACCACCACCCCGCTGCTCTTGCCCAAACTCAGGGACAAGGGTAGCCTGCGGAGCCCTGCTAATATGCCCAGTGCTGGAGATATGGAGCCAGCTCTAAAGAGGCGATGCCTACGAATCCGTGATCAGAATAAGTAGAGGATGGAGACTCCCTGTTTAACACTGAATGGCGGTGCCAGATTCAGTGCCACGCCCTCTTGTGGACAACGCCAGTGCTAACACCCTCCAGCCTGTCAGCCCACCAGAGCGTTGCTCTGCCTGTAGACCAGCAGGGTGCCAACCCAGGAAGGAGTCCAGATGGCCATACTATCACCAGTCAATGTGTGGAAAGAACACAACACAGTCACACATTTTGTCTCGGACCAAAGAGTATTGCTGGCTAGTGTGTTATATTGTGTTCAGTGAGCGCTTGATATGGAGCATCTCAGATCTTCTCCCTGTCTGACATTGCCctaaagtgtgtctgtgtgtatgtgttggtgTGGCTGCCCAGAtgcactcctcctcctcctctccttgctccaaacagcagacagggCTCTGATCAGCCTTGTGTGGTCTTCTCAGATGGAGCCTGAACATGATCTCTTTCCAGGGGAAACGGTTTGTTTTCCCTGCCCGGCTTGCACAAAGAGCCACATTGTTCCTCTCCCCATATCCCACGCTGACTCCCCACTCCAGGTTTTGGGTTACCTGGCCGACGGGGACTCAGACTTcaggagctttttttttctttttttgactgACAGCCAGGAATATAGTATACCCTTCTCCCCTCCAGATCACCGCCCAATCTAAATATGGCACACAGTAACACAGTAGTTCTGAGGCTTGATTCCTCAGATTAAGACTTCATCATTGGGCAGTTTATACATTGTGTGGAAAGAGCCTGGCTGTGCTGTCAAGACAGTTGACTGAGCAGAATAACACCATGAGGGAAAAGGATGCTCCCTCTGCTTCCTCTAAAACAAAGTAAAACTAGAAAATGTGAGTGGGCACCTACTGATATACAGTAGCTGAGATGGTTTGTGAATACTTACAGTAAGTCCTCCTGATGACGCTGGTCCCTCACCTTTCACCTGATCTGCCAAAGCTTTGATTTGAATCACTTGTAGCACCAAGTGCCCTGCATGTTTGCTTTAAAATTCATGGCACATGACAGTTTAACTGATCctgattcagatttttttaattctgaTTCTAAAAAATCAGGCTGGTAATATTACCAAATGTGGTGTTATACTCAACCGTCCAATGCTGTAGTATGCAGCGATCAGTATTACAGTTTCTGCTATTGGTGATACCTGATGAAATTTGATTCAGAGAGATCAATTCAAGGCTTTGTCAACACTTGTCCCATTGTaaaatttcagtttttcttgttGAACTCTACACAGATACTATTTGATGTTATATTAATTTATGGATTATGCATCTATAGATTTTCACAAAAAAGTgctttatttcttcattttatttttctttgatgattttattttgtgtgccGAAGCTCTTaagtgtttatatactgtatccCCACTAGAGAGCAGTGTTTGCTTTTGTAACTTTGCACCTGCCCTTAGTTGACAAGAAAGCCCCAGGAGGTCCATAGGCAGCCTGCTGAAACCCATATGAGTACACAGAACATAACACGGCACTCAGTGCCAGCTGACTGATATCCAATGCCAAGTAGATAGCTTTCCTCCACATCTTGCTGCCATTATTTTCTCTTTCCATCCTAATGTTGCCTACCATTACAGCAGTGTCAAGAAGACCCAGGGTGCCCTTCAAAGCCTCTTAATGAAGAGTTCAACAGTCCCCTGGGATGAGCAGTCATCATGGCCTACTCCTAGAATAACTCTAAATGTGACCCACCCCTGCCATCATTCCAAAaatacgtgcgtgcgtgcgtacgtgcgtgcgagcgtgcgtgcgtgcgtgcacacCCTAAAGCAGCGACACATTTCTCCCCACTCATTCCAGCCTACATCTTCACCACAGGTCATGCCATTATGTTAGTGTCATCCTTGGCTTGTCAGGGGACTTTGTCAGTGATGACATCACTCTAAATAGCTGTGATGTAAACATGTGGTCCTCTACTCTGATGCCAGaggcaaaaaaaatacattgttaaAGACTGCcattgttggttttattgcacATTTTAATCATTGCCATTTCTGATCTGATACCGTATTTGTGGTAATCAAATgtttggacaaaaaaaataatgttgtgTCACAAAtgatgttgctgttgttgcctGAAAGTCATTGGTACTTTCTGACCTCCCCTGTCAATCATTTAGCCCAATGTCTGAATAGATTATTCACAGGTTGTCTGTATTTGAATATAGATTCAGTAACCGAGAGCTTTGGTGGAGGCCTCTttgtaaagtaaaataaataaaagttattctAAGAGCATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252644 lncRNA upstream 3690 22535659 ~ 22537716 (+) True G186506
TU252572 lncRNA upstream 239923 22300784 ~ 22301483 (+) False lin28b
TU252574 lncRNA upstream 246709 22294442 ~ 22294697 (+) True G186452
XR_005637027.1 lncRNA upstream 707624 21832948 ~ 21833782 (+) True LOC120547080
XR_005636932.1 lncRNA upstream 794852 21745581 ~ 21746554 (+) True LOC120546760
TU252735 lncRNA downstream 163205 22716970 ~ 22719893 (+) True G186578
TU252803 lncRNA downstream 245970 22799735 ~ 22800058 (+) True G186622
TU252810 lncRNA downstream 255455 22809220 ~ 22809461 (+) False kcns3b
TU252843 lncRNA downstream 293107 22846872 ~ 22847674 (+) True G186641
TU252914 lncRNA downstream 408286 22962051 ~ 22966010 (+) True si:ch211-22i13.2
XM_039781291.1 mRNA upstream 25715 22489046 ~ 22515691 (+) True LOC120546366
XM_039781290.1 mRNA upstream 25715 22490674 ~ 22515691 (+) False LOC120546366
XM_039781292.1 mRNA upstream 25715 22490674 ~ 22515691 (+) False LOC120546366
XM_039781294.1 mRNA upstream 56505 22481920 ~ 22484901 (+) True LOC120546368
XM_039781020.1 mRNA upstream 91342 22442021 ~ 22450064 (+) False LOC120546233
XM_039782272.1 mRNA downstream 1095 22554860 ~ 22585207 (+) True LOC120546968
XM_039782276.1 mRNA downstream 1095 22554860 ~ 22580870 (+) False LOC120546968
XM_039782273.1 mRNA downstream 1096 22554861 ~ 22585207 (+) False LOC120546968
XM_039782274.1 mRNA downstream 1096 22554861 ~ 22585207 (+) False LOC120546968
XM_039782275.1 mRNA downstream 1096 22554861 ~ 22585207 (+) False LOC120546968
TU252499 other upstream 475817 21985779 ~ 22065589 (+) True G186394
TU252459 other upstream 594406 21944743 ~ 21947000 (+) True erh
TU251678 other upstream 2681201 19856735 ~ 19860205 (+) False kif25
TU251521 other upstream 2893250 19634283 ~ 19648156 (+) False acp1
XR_005636890.1 other upstream 3002198 19429596 ~ 19539208 (+) False nhsl1b
XR_005636956.1 other downstream 1024613 23578378 ~ 23589689 (+) True nfkbie
XR_005636955.1 other downstream 1024613 23578378 ~ 23588514 (+) False nfkbie
TU253325 other downstream 1525838 24079603 ~ 24083104 (+) True G186975
TU253479 other downstream 1953148 24506913 ~ 24507813 (+) True G187094
TU253601 other downstream 2450254 25004019 ~ 25009407 (+) False lama2

Expression Profile