RNA id: XM_039782518.1


Basic Information

Item Value
RNA id XM_039782518.1
length 3063
RNA type mRNA
GC content 0.43
exon number 10
gene id LOC120547103
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 25341593 ~ 25350144 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cttatatatactgtctatggtatttACAGTATGGCCCAAATTTGCCTACGTATAGCCAGTTTGTTAGAAACAAAGGCgctaaactaaaacaaaaaacattatcaAGCTCAAACCTGCAAAGTTACTTTCctgctaactaacgttagctaactttgTTAACGTTAGGTTAAGCTAGCTAACTTAATAATCATAGATTTATATCGTATTTTATATACTATGATGAAGAGTAATAATATAAAGTTAGCTTTCATGTTTTGGTTGATAACTACTCGTCGCTAGTTATTATTGCAGAATAGCGAGCTGTGTTATTTTGATCTTTCACCCAGTAAGGACATTACCCAGCAGCGTGCGAATGCACTCTTCTCTATCAACTAAAGACACTCCAAGCATTTCTCAGTTGacgttagttagttagctacaGAGGCTaggcctaacgttagctagtcttttttaaatacttaaCAAATAGAACACCCAGGTGCTGTCATGTGACACTTTCATGTGTTTATATGTTGGTGAAAGGTGAAATGTGTCTTCATGCAGCTTACGTTTGGCCGTGTAAATAAAGGAGTATTTTTACCTGCTCCAAAATGTCTACAGAGAGTCAGTGCCTTCTTCTATTCTATGCAgaatatattatgttattatgtaTCAGGTTAAGTTTAGAGATGGCACTGTAAACACAATATAGAAAACTAATTTATAGAGAAGTACAGTCGCTACACCAAACAGTTGTATCAGTGTTTATTAATActtaaaaaatgccaaaagtGCCACACAGCTCTTCTTTCTCAGTAACGCAATGTGGTACTGCTCGGTGAATAtttttaaagagcccctattatgcttttttgggGTTTTCCGTCATTAAGTGTGTTAtatagttttgttgtgtatgtaatatgtataaagtacaaaaaaaaaagttttcactCCAAATGGAGCTTTTTCTCCCACAGAAAAAGCACTTCTCTTCAACTTCCTGAAACGCCTGGTCTGCAAATTCCCCAATCAGTGACGTAGACAATTAAGAAAGCCCGTCCTGCCGCACGCCCTCGCTCTAAGGAAGAGAACCAGGAGGCAGGCAGGTCGGCATTGAACAATTTGTTTGGATTACATTTATCATGTCCCAGTGGAGGCGTTGTGTGCTTGGCTGCGCAAGCGTAACGCAATTGTTTGGACttccaaaagaagaagaaaagaagaatcaGTGGCTTAAATTTATTTATGGAACGCGTCCTGATCAATACAAcctcaacatttttttgtgttttcggCATTTTACCAAGGATAGCTTTGTGAACTGGGCACAGTTCAACTCCGGGTTTTCCAAGCGTTTGTTACTGAAAGACGGGTCAGTTCCCACTTTGTTTGACCAACCTGGAGCTTCCGTATCACAACTTCAGGACACTGGTACTACACAAACTAGATTTCAGGAAGTAGGATGCCAGACTGACCATCGACAAACCATCTCAGTGGGCACACAGTCCGTGGCTTCTAAAAAGATGTTTTCTGTCGGCACACAGTTATCCAGGGGCACACTGAGGGAGCATCACATGAGAAGCAAAGGCACCCAGGCAACGGTGTCTTGTGTCAGTGTTGGGACTAAAACCACATCCCGTTGTGACTTCCCACTGTCATCTACATCAATTAAAGGCCAGTTAGTCAGACCAAGGAAGAGACCTCGTCTTGAgatggatgaggaagaggaagcagACACATCAGCGGAGCCTGCGGAGCTGCTAGACTCGACATATAACCCGGGCGACTTTGTTCTTACGGAGGAATCTGACATGTCGTTTGTGCCAAGGACCGCATATGCTGATGATAAATATGTCGTCTTTGAAAGCTGCCTCAGAGAGCTGTTTGACAACTGTCCAGTGTGCAATACTAGGTGTGATGTCCGGCGGCTGCGAATTGGTACTTATGTGGCATTCAACCAGTTTTGCCCAAAATGCAACTACTCGAGGCAGTGGCAGAGCCAGCCGATGGTTCGAAGTACTCCTGTTGGCAACCTTCTGTTGTCAGCAGCCACATATTTCACCGGTGCATCCTTCATACAACTGGAAAAgATATTTAAGGCCATGCAGCTCCAGATTTTTCCGTCCGACACCTTCAGGATGCATGCTAGGAATTTCTTGGAGCCAGCTATTATTCACAAATGGACAACGGACCAGCAGATTCTTTTGCAGCAGCTAAAGCAGAAGGGAATGCTCAGACTTTGTGGAGACATGCGAGCAGACTCACCAGGCCATTCAGCTAATTATGGCAGTTACACCGTGATGCACCTGGAGAGTAACACTATTTTAGACCTTCAGCTTGTTCAGAGCAATGAAGTACGTGGTAGTTACCGCATGGAGAAGGAGGGATTGAAAAGATGCCTAGATCTTCTTGAATCAAATGGTTTGGAAGTGGACTACATCGTTACCGACCGCCATCCACAAATTCAGAAGTTTCTTAGGGAAAGGAACATTGCACAGTTCTATGACGTGTGGCACTTTGTAAAAGGTTTGTCCAAGAAACTGGACAAAGTGGCACAAAACAAGGAGTGTGTGGTGCTGAGAAAGTGGCTGCGCAGcataaaaaatcatctttacTGGAGTGCCAACTCGTCAAAAACAGGGCCTGAAAAGGTGGCCAAGTGGACGTCCTTGGTCAACCACATCCAAAATGTTCACAAACATGAAAACCCCATCTTTCGCAAATGTGAACATCTGGACCGAGTGTCAAGGGATCCAGCAAAGTGGTTCCAACCAGGGTCAATGGCACTCCACAAAGTGGAAAAAATACTTTGCAATAAGAGAGTTCTCAAAGATGTGGAGAAGCTGAGTCCCCACTTCCAAACCTCATCGCTGGAGGCATTCCACCGCTTGATCCTGCGCTTTACACCCAAGAATGTGGTCTTCCCTTTCCTGGGAAGGTTGTGCTGTACCTAGCAGCCATGCATTACAACGAAAATGCAGACTACAGCCAAGCAACAACATCTCTAGGGCAAGCTGTCGACAAGGACGTATTCCCCAAATCAGAAAAGGGTGAATGCTCAGAAAGGCCTGTGAAAATGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU253718 lncRNA upstream 2511 25338845 ~ 25339266 (+) True G187260
TU253692 lncRNA upstream 34378 25261835 ~ 25307399 (+) False G187241
TU253776 lncRNA downstream 58843 25405717 ~ 25440543 (+) False G187299
TU253774 lncRNA downstream 80221 25427095 ~ 25429908 (+) True G187299
TU253780 lncRNA downstream 87127 25434001 ~ 25434306 (+) True G187301
TU253790 lncRNA downstream 179573 25526447 ~ 25526872 (+) True G187310
TU253870 lncRNA downstream 556064 25902938 ~ 25905402 (+) True G187378
XM_039781653.1 mRNA upstream 47101 25281934 ~ 25294676 (+) True slc10a1
XM_039781642.1 mRNA upstream 80531 25237827 ~ 25261246 (+) True fntb
XM_039781351.1 mRNA upstream 332320 24810079 ~ 25009457 (+) True lama2
XM_039782289.1 mRNA upstream 711187 24534722 ~ 24630590 (+) True LOC120546974
XM_039782291.1 mRNA upstream 737953 24530331 ~ 24603824 (+) False LOC120546974
XM_039782698.1 mRNA downstream 4355 25351229 ~ 25368337 (+) True gpr176
XM_039781523.1 mRNA downstream 242354 25589228 ~ 25596709 (+) True katnbl1
XM_039781524.1 mRNA downstream 250804 25597678 ~ 25604734 (+) True emc7b
XM_039781522.1 mRNA downstream 263123 25609997 ~ 25650563 (+) True aven
XM_039781525.1 mRNA downstream 433908 25780782 ~ 25809922 (+) False fmn1
unassigned_transcript_1083 other upstream 121837 25219868 ~ 25219940 (+) True trnat-ugu_3
TU253601 other upstream 332370 25004019 ~ 25009407 (+) False lama2
TU253479 other upstream 833964 24506913 ~ 24507813 (+) True G187094
TU253325 other upstream 1258673 24079603 ~ 24083104 (+) True G186975
XR_005636955.1 other upstream 1753263 23578378 ~ 23588514 (+) False nfkbie
TU253978 other downstream 681186 26028060 ~ 26030400 (+) False nudt14
TU254022 other downstream 929821 26276695 ~ 26281368 (+) False gareml
TU254081 other downstream 1098776 26445650 ~ 26452304 (+) False tfap2b
TU254083 other downstream 1098776 26445650 ~ 26452304 (+) False tfap2b
XR_005637060.1 other downstream 1310467 26657341 ~ 26657503 (+) True LOC120547357

Expression Profile