RNA id: XM_039782543.1


Basic Information

Item Value
RNA id XM_039782543.1
length 3181
RNA type mRNA
GC content 0.59
exon number 20
gene id LOC120547115
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 31620408 ~ 31704363 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGGTGTGTGAGCTATAGTTTGTGTCTGTCGCTGCCTGTGATAATCAGATCCGTGTGAAGCTGGAGCTGTTCGGTTGGACCTCTGGGCTTAATGGGTCGAAAGTTTGGAGTGAAACGAGACAAGAAGAAACGGTTTACTAGCTCGTTAACTGATTTACTTCTCCCTGCCAGACCCTGTGGACCGAGCACAGCGAGTTTGAACTGTTGTAACCGTTATAAATTCAGCCGTTGAGCGGCTCGAGCTCGCCGCTGGATGGGAGTTTAAAACGCTTATTTTTCTCCTCGATGAAAGCGAAAAACCCGCCCTGTTGTCAGAGATGCTGCCAGTGACACACAAGCCGCAGTCACACCCAGCAGGAAGCCTGAGGATTTAGTTGTTTAtaaaacttttctttttctttcataagTTCAACTCTGCAGCATCCAGAGCTTTTACTTCATAGTTGTGTTTCTACCTCAGAGATGCCCGTCAGTGAGAGGAGACCTTTCGTGCAGGAGTTCAGCGATAGCGGAGACCAATGTCTGCCGACAACAGCCCGCTGCCGCCGGCCTCGCTGCAGTCTTTCCCCGCCCTCCCTCCGCACGCCGTCCCGCCCACCCCGTCGCCGTCCCCGAGCCCGCCTGCCACCCTCTGCGGCCGGCTGTCCAACGGCAGCCGGGCGGGCGCCAGCCCCACCAGCTCGCGGGGCTCCATCCACGGAGGAGTCTCCTTCCTGCTCCAGATCGGACTCACCCGGGAGACGGTCACCCTGGACCCCGGAGACCACTCGCTGTCGGCTGTCCGGGAGCTCGTCTGCTCCATCGTGGATCAGAAGttCCCTGAATGTGGATTTTTCGGGATGTACGACAAGATCCTGCTCTTCCGCCACGACCTGAACTCGGACAACATCCTGCAGCGTCTGACCGCGGCGGAGGAGATCCACGAAGGAGACCTGGTCGAGGTGGTGCTCTCCGCTCTGGCCACAGCCGAGGACTTCCAGATCCGACCTCACGCGCTGTACGTCCACTCCTACAAGGCGCCGGCCTTCTGCGACGACTGCGGGGAGATGCTGTGGGGGCTCGTCCGACAGGGCCTCAAGTGTGAAGGATGCGGACTGAACTACCACAAACGGTGTGCGTTCAAGATCCCCAACAACTGCAGCGGGGTCAAGAAGAGACGGCTGTCCAACATCTCGCTGCCGGGCGCCATCATGTCCATCGCTCGTCCACCGTCCACCGAGTTCGCCCAGACACCGCAGGAGGAGCGCCCCCTCCTGGGCGCCGGGAAGCGTAACTCCCTGCTGAGCGGTCGTCCCATCTGGATGGAGAAGATGGTCCTGGGTCGGGTCAAAGTCCCTCACACCTTCTCTGTCCACACCTACACTCGTCCCACCATCTGCCAGTACTGCAAACGCTTGCTAAAGGGCCTCTTCCGCCAGGGCATGCAGTGCAAAGATTGTAAATTTAACTGCCATAAGAGATGTGCGGCCAAAATACCTCGAGACTGCCTCGGTGAGGTCGACTTTAACGGAGAACCGGCCAGTCACAGTCTGGACTCGGAGGCGACGATGGAGGTGGACAACTGCGACACCAACAGCGATGGCGGCCACAGCCTGGACGAGCAGGACGACAAGCTCTTCTTCAACGAGGGGCACGGCTGCACGGACGGCGAGAAGGACGACGAGACGCTCCGAGCCATCAGCCCGTGCACGAGCAGCAACATCCCTCTGATGCGAGTGGTTCAGTCCATCAAACACACCAAGAGAAAAAGCGCCACCATGGTTAAAGAGGGCTGGATGGTCCACTACACCAGCACCGACAACCTGAGGAAGAGACATTACTGGAGGCTGGACAGCAAGACTCTGACTCTGTTCCAGAATGAAAGCGGAGCCAAGTATTACAAGGAGATCCCCCTGTCCGAGATCCTCCAGGTGGAGCCGGCGCAGGACTTCGGTAGCCTGCCCCAGGGCAGCAACGCTCACTGCTTCGAGGTGATCACGACCAACATGGTGTACTACGTCGGGGAGGACGGTGGCGGCCTGCATCACAACCCCGTCCTGGCGGCGTCCGGCGTGGGGCGGGACGTGGGCCAGAGCTGGGAGAAGGCCATCCGACAGGCGATGATGCCCGTCACGCCCAAGGCCAGCGTCGGCACGGGGCACAGCCAGGGGAAGGACCACAAGGAAGTCTCCATCAGCATATCGGTGTCCAACTCCCAGATACAAGAAAACGTGGATATCAGCTCGGTGTATCAGATCTTTGCTGACGAAGTCCTCGGCTCCGGACAGTTTGGGATCGTCTACGGAGGTAAACACAGAAAGACCGGCAGAGACGTGGCGATCAAAATCATCGACAAAATGAGGTTTCCCACCAAACAGGAGAGCCAGCTGAGGAACGAGGTGGCCATTCTCCAGAACCTGCACCACCCGGGGATCGTTAACCTGGACTGCATGTTCGAGACGCCCGAGCAGGTGTTCGTCATCATGGAGAAGCTCCACGGCGACATGTTGGAGATGATTTTGTCCAGCGAGAAGAGCCGGCTGCCGGAACGCCTCACCAAGTTCCTGGTCACGCAGATCCTGGTGGCTCTGAGACATCTACACTTCAAGAACGTCGTCCACTGTGATCTGAAGCCGGAGAACGTTCTCCTGGCCTCGGCAGAACCCTTCCCTCAGGTGAAGCTCTGCGACTTCGGCTTCGCTCGAATCATCGGGGAGAAGTCGTTCCGCCGCTCGGTGGTCGGCACGCCGGCCTATCTGGCGCCCGAGGTGCTTCGCAGCAAAGGCTACAACCGCTCGCTAGACATGTGGTCGGTCGGCGTCATCATCTACGTCAGCCTGAGCGGGACGTTTCCCTTCAACGAGGACGAGGACATCAACGACCAGATCCAGAACGCTGCCTTCATGTACCCATCCAACCCCTGGAAGGAGATCTCGGAGCAAGCCACAGACCTCATCAATAACCTGCTGCAGGTGAAGATGAGGAAGCGCTACAGCGTGGACAAGTCGCTGAGTCACCCCTGGCTGCAGGACTACCAGACCTGGCTGGACCTCCGGGAGTTTGAGACGAAGCGAGGCGAGCGCTACATCACCCACGAGAGCGACGACGCGCGCTGGGAGGAGCACGCCGACGAGAGAGGCCTGCACTGCCCCAAACACTTCATCATGTCGCCCAACCTGGACGACATGGACGAGGACCCCTAG

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004697 protein kinase C activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU255776 lncRNA upstream 22693 31597215 ~ 31597715 (+) True G188749
TU255775 lncRNA upstream 28949 31591055 ~ 31591459 (+) True G188748
TU255758 lncRNA upstream 147410 31472777 ~ 31472998 (+) True G188737
TU255757 lncRNA upstream 161707 31458421 ~ 31458701 (+) True G188736
TU255734 lncRNA upstream 264903 31351448 ~ 31355505 (+) True G188719
TU255801 lncRNA downstream 4855 31708879 ~ 31710971 (+) True G188763
TU255807 lncRNA downstream 16068 31720092 ~ 31721287 (+) True G188768
TU255825 lncRNA downstream 135782 31839806 ~ 31911299 (+) True G188785
TU255856 lncRNA downstream 214975 31918999 ~ 31927133 (+) True G188809
TU255863 lncRNA downstream 243174 31947198 ~ 31952652 (+) True G188816
XM_039782030.1 mRNA upstream 5886 31607288 ~ 31614522 (+) True LOC120546816
XM_039781365.1 mRNA upstream 33459 31582418 ~ 31586949 (+) True LOC120546439
XM_039782029.1 mRNA upstream 44657 31507627 ~ 31575751 (+) True cnksr3
XM_039781932.1 mRNA upstream 115550 31496301 ~ 31504858 (+) True rps7
XM_039781205.1 mRNA upstream 313613 31221566 ~ 31306795 (+) False hivep2a
XM_039781689.1 mRNA downstream 31546 31735570 ~ 31756918 (+) True cebpz
XM_039780976.1 mRNA downstream 72939 31776963 ~ 31782066 (+) True LOC120546196
XM_039782524.1 mRNA downstream 162870 31866894 ~ 31869296 (+) True nkx2.2b
XM_039782525.1 mRNA downstream 162870 31866894 ~ 31869296 (+) False nkx2.2b
XM_039782187.1 mRNA downstream 177441 31881465 ~ 31884802 (+) True nkx2.4b
TU255785 other upstream 10307 31606054 ~ 31610101 (+) False LOC120546816
XR_005637055.1 other upstream 116180 31504009 ~ 31504228 (+) True LOC120547352
XR_005637054.1 other upstream 119354 31500835 ~ 31501054 (+) True LOC120547351
XR_005637053.1 other upstream 121080 31499109 ~ 31499328 (+) True LOC120547350
XR_005637052.1 other upstream 122234 31497955 ~ 31498174 (+) True LOC120547349
TU255816 other downstream 73005 31777029 ~ 31781038 (+) False LOC120546196
TU256147 other downstream 872454 32576478 ~ 32622264 (+) False myo6a
TU256417 other downstream 1624079 33328103 ~ 33331713 (+) False pex7
TU256470 other downstream 1749972 33453996 ~ 33458768 (+) True G189269
TU256525 other downstream 1937596 33641620 ~ 33685556 (+) True G189309

Expression Profile