RNA id: XM_039782550.1


Basic Information

Item Value
RNA id XM_039782550.1
length 3013
RNA type mRNA
GC content 0.42
exon number 3
gene id LOC120547117
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 28917291 ~ 28924763 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGCCTCACAGAAAAAGGGCTGACCAGCTCACTGAGTGTTTTCTCTTCTCCATATTCCGTACTTTCTTTTCCTCAGCTCATGCTGCGTTTCCAGCGTTTCCTCAGCATGTTTTGGAATTGGCAGCCGAGGCGTGATAGAGCTCCAGCATCACCGTAGGGCTCTCAGAAGGGGACTGTTGAACTTGACGGATCACAGTGAGAAGGGGAATCAGACGGAAGATTCAGAGTCAGAGGCAGCTACAACCACCTCCAAACAAAGGATTTAAGCTGCCAGGGAACACCTTCAACCCTTAGCCTTCCTATTGCTTtggtaatacataaaaaaacctTGAATGCAACTTCTTCTACTGCTGTCCAATGACTGTTATGTCCAGCCAACGAAACATGGCTACAAATTCGTCAATTGACCACTGCAATGTGCCCAATAATGCCACATACCAAACCCTCTCCTGGGTGATGATGGGAGAGTTCGTGCTGGGTCTGCCTCTCAACCTGTCGGTCCTCTACATCTTCATCTTCAGGTTCAAGTTCTGGAAGAACAAAAGTATCTTCCTGTTCAATATTGTGGTTGCTGACTTCTTGCTGGTGGCCTGTCTTCCTGCCAAGGCCTACCATTACCATAAGCACGAGAGACACAACCAAGATAAAGTGGTGTGTAAGACGATGTTCTTCATGCTGTTTTTAAACCGAGGAGCCACTATCGCCTTTCTCATCACCGTGTCTATCGACCGCTACTTCAACGTGGTGCATCTTGGAAGGAAGAATTTTGTCAAAGTGCTGAAGAAATCTCCTCAAATCTCCATCTTGATCTGGCTGCTCTTGCTGCCCCTCACCATCCCCACTATGGTCAATACCTTTGAGTGCTGCAACAGCCACGGCCGCGAAGTCGAGACTTTTCTTCACGATGTGACTGACACCTTCAGAGAGatcgTCTGCTTCACCCAGATCATCATCCCCTTCATCATCCTTGTCTACTGCACGGTGCGCATAGTCAACCGGCTGAGGAGGAAAACGGTCGGGGAAAAGACCAAACTGAGGAGAGCCGTGTTCGTTGTCTTGTCCGTTGTGGTCGTCTTCTCCGTCTGCTTCCTGCCCAGCACTATAGCGAGAGCGGTGCTGCTGGGCGTCAGGCTGCGAAAATGGCAGGCTGCAGAGGACGTTGTGGTCCAGGTCTACGACGGCCTCATGGTTTTGTCTTACGCCGACTGCCTGCTGGACCCGCTGGTTTACTGCTTCTGTAACTCGGGGTTTAAAGATGCCTACGTAGCCACCTTCTGTCCGACGTTTCTTCAGACGAGATGGCCAAATTCCGACTGTGGCACGGTAACAACAACTACTACAACGTATACAAATCAAAATCCTGGAACTAAAACTGTTTCTTTTCAGGTACTGgagaaattataatttttttcttcttttataatGAGAACTATCTCTGAGGGCGTTTACTCACCATTATGACTGAAAACGCAGAAGAGGCGGATGCTGCCCGACATCACATTCTTTTGGAGCTAAAGAGACTTACCTTTTCAACATTTAAAGTACTAATCAtttctttctgcatttttttccaCTGTAAATTCTATACCGATATATATGCCCAATAATGTGTCATATGAAACTTATTAGTTCATGTTTACTGCTTTTAATTGTTCACTGTAAATAAATCACCAAAGAATAGGTGCAAGTGAATAGAGTATTTAGCGAAGAAGTAGTCAAGGAGGTGTCAGTCAAGCACAGTCTGTACATACAGTCCAGTGAAACGGGTTCTTTAGCCacaacacctgtgtgggtgtacaGGGAGTTAAAGTGAATTAACAGGCTTGTGTATAGCATTGAGATACTGTCTGACTTGTCCACTCATATGGAttcatattgtatatatttgtatattattatttactttaaaatgtgctgtaggtaggattgtgaagatccaggacttagccaaaaaatgtgaaagtcgacaacttctcagtccctcccccctttccactaaagcccaaaacggtcggTTGCATTTTACGGCATATGACGGTCCCTGCAATAACTACAAAGTACTCAGCAGTATAGTAGTATGGACTAAACATGCTGTAAAGAAACTTGTTAAAGGTCCtatattgtaaaaaaacaaacaaacaaaaaacaaaaaaacaaaaacaaacaagcagtcAGGATTTCCGtgtggttgtgatgtcacaactataatATATTAAAGGTAATaagtgccgctacagtgctgttacagacattccccggctgcaatgatggtGCAGAGACGCCAAAAGTGCAGAGGCAAAAGTCTCAGATATGCTCAGGGGGGTTTAAAGAGGGCTAAACggagcatttcagacagagggtgaatacaggtatattcagacagacagtatgaaaagaaatgtgttttttaacaatgaagtacgtaaacatgttctagaagaaacccaaaatgcagaaaatgagcatgatatgggatcttgttgtactgtatgtttacccTGTTTTGCAGTGTTTGCAGAAGAATTTTCATTCATCACTCACCACTTTATATCTCCGTGTTCATCATCAGTACCTCAAATCAGTTGTACCTGTCCTCATTGGGGTTTACCCTCAGTGCAACATATTGTCAACTCCACCACGTTTTCTAACATTACTCAAGTATGTACATAAACAGTTCAATATCTCACAATTGTTCCTTTTGAAATTAATTTTCTTCTGTGGCTGCATTTACACACCACATTTACAACGGATGTGTAAAAAATGATTCATGTTGTTGccttttttataaatcagagtaaactgGCCTGTCTACGTTTCTACATTATGTTCACCACAACAACCATGTCAAACCTGAGTGGACTGCAGAAACCTGGAAGGCTAATTTAAACTTTCCTCATTCACACTGTAAATAATTTTGTTATGTTGATAATCAAAATtgaattatttgtataaaattgGGATACTGGCTGAAGATCTTTGTAtactgctgctgtaaataaacAGAATACAGCTTC

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254745 lncRNA upstream 2493 28914402 ~ 28914798 (+) True G188069
TU254731 lncRNA upstream 36856 28878748 ~ 28880435 (+) True G188057
TU254729 lncRNA upstream 41950 28872686 ~ 28875341 (+) True ttll2
TU254578 lncRNA upstream 268168 28639454 ~ 28649123 (+) False afdna
TU254553 lncRNA upstream 371776 28472115 ~ 28545515 (+) True G187918
TU254770 lncRNA downstream 6295 28931058 ~ 28944726 (+) True G188091
TU254776 lncRNA downstream 48836 28973599 ~ 28973911 (+) True G188097
TU254779 lncRNA downstream 52207 28976970 ~ 28977625 (+) True G188100
TU254780 lncRNA downstream 54192 28978955 ~ 28981624 (+) True G188101
TU254783 lncRNA downstream 58881 28983644 ~ 28983880 (+) True G188104
XM_039782551.1 mRNA upstream 10911 28902376 ~ 28906380 (+) True gpr31
XM_039781357.1 mRNA upstream 34170 28875134 ~ 28883121 (+) False ttll2
XM_039782552.1 mRNA upstream 44688 28866213 ~ 28872603 (+) True LOC120547119
XM_039782553.1 mRNA upstream 44688 28866213 ~ 28872603 (+) False LOC120547119
XM_039782245.1 mRNA upstream 130473 28773325 ~ 28786818 (+) True plg
XM_039781557.1 mRNA downstream 186195 29110958 ~ 29132700 (+) False trim54
XM_039781556.1 mRNA downstream 186196 29110959 ~ 29132700 (+) True trim54
XM_039780911.1 mRNA downstream 271406 29196169 ~ 29220727 (+) True slc30a2
XM_039782701.1 mRNA downstream 367942 29292705 ~ 29304940 (+) True si:ch211-245h14.1
XM_039782699.1 mRNA downstream 367942 29292705 ~ 29304940 (+) False si:ch211-245h14.1
TU254737 other upstream 25927 28886490 ~ 28891364 (+) True G188063
unassigned_transcript_1089 other upstream 264607 28652602 ~ 28652684 (+) True trnal-cag_2
TU254572 other upstream 268168 28639454 ~ 28649123 (+) False afdna
TU254581 other upstream 268168 28639454 ~ 28649123 (+) False afdna
unassigned_transcript_1088 other upstream 1935498 26981721 ~ 26981793 (+) True trnat-cgu_2
TU254854 other downstream 209408 29134171 ~ 29136917 (+) True G188167
TU254892 other downstream 367978 29292741 ~ 29312364 (+) False si:ch211-245h14.1
TU254896 other downstream 367978 29292741 ~ 29312364 (+) False si:ch211-245h14.1
TU254910 other downstream 494613 29419376 ~ 29420727 (+) True G188207
TU254981 other downstream 537086 29461849 ~ 29463874 (+) True G188268

Expression Profile