RNA id: XM_039782560.1


Basic Information

Item Value
RNA id XM_039782560.1
length 3846
RNA type mRNA
GC content 0.46
exon number 6
gene id rnf217
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 16340938 ~ 16352655 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGCTGCTCTCCTACATGCTGACGACGAGACCCCGGAAGCACCGAGCTGCCTGcctgctttgttttgttttggtagTGGAGTTGGAGAAGAGGTAGAGAGGCCGAGGTCCGTCCGGGAGAGAACCGCTCACTAAATGGGGAGAGCCATATCGGGGATGGAAGATGACAGACCGATAGCCGACGCCTGTAAAATGCCGAGTTTTATCAGCGGTTTCGAGGAGGAGAGGGTGAAATTGTCCCGTAACCTGCCGGAAGAAACTTCCTTCACGGACAGCAAAGTTGAGCACTCGGTCAGGGATTTGAGCCGTCGTGTCACCAGATCAAACTCGCGGTTATCCCTGGACGGAGGTGAGCGGGACTCGGAGGACAGGAGCAGCGAGGAGGAGAGGGATGCGaagggcaacaacaacaacaactgcaacggcggaggaggagagaggaggaggagggcgagCGCTGTCGAGATTTTGAGGAGGAATTTCGGGGTTTCAaaatctccctctctgtgtctaaATACAAACAGCCGGATGCAGCGCGGCGCGGAGCACGAACAACATCGCGAAGGAAATGTTAATAACCACGTTTATAACGGTTATGGAACCGAACGTGGCGAATGTAAAAAGTCGGAGCGTGAAACGGGCGAAGCGGGTACTAAAAACGAGCCAACTTTGAACGACTTGACTTCGGTTGTACAAAGAGTTGAATTTGTAACCGTTAACGTTGCTGGTCAGCGCCATCGTAAACGTGACAGTGACAGCAACACAGTAGCTTTAGATGATTCTTTGAACACTAAAGAACACGTCTACTGCACTGTGTACTGCATCGCTAACGACAGAAAAGACGTTGTAATCACAGACGATGAAACGGTCACATCTGACGCATCAAAAATGGACTTGGAGACAGAACAGGAAGCAGGCTCGAGTCCCGAACCGGCTCTGTACACATTGGACGACCTGGTGGATCCTTTCTGGGACATGACCCACCCGTTGTCCATGGAACAGGCCGGTGCGGGGACTACGATGCAGAGTTGCCGGGTGTGCCTGGAAGAGAAAACCATCGCACCCCTGCCCTGCTGCAGGAAGGCCGTGTGCGATGAGTGTCTGAAACTCTACGTCAGCTCTCAGGTGCGAGTAGCCAAATCTTACATCAGCTGTCCAATCCCAGAGTGCAGTGGCTTCCTGGAGGAGGGAGTGGTAATTTCCCATTTAGCCAATGAAGACGTAGCAAAATACCGTTACTTTTTGGAGCTGAGTCAGCTAGACTCGAGCACCAAACCATGCCCCCAGTGCAGTCAGTTCAGCTCTCTGAAGGGGAACAACTCCAACCACTCCGAGCACAAGTACAAGATCCAGTGTAGCAATTGCCAGTTTGTGTGGTGCTTTAAATGCCACGCACCATGGCACAATGGGGTCAGATGTCGCGAATACAGGAAAGGAGACAAGCTGCTTCGAAGCTGGGCTAGTGTCATAGAGCACGGGCAAAGAAACGCCCAGAAATGTCCACAGTGTAAGATCCATATTCAGCGTACAGAGGGATGTGACCATATGACATGTACGCAGTGTAACACTAACTTCTGTTACCGCTGTGGAGAGCGCTACCGACACCTAAGGTTTTTCGGGGACCATACATCCAACCTCAGTGTGTTTGGATGCAAGTTTCGCTATCTACCTGATAAACCTCATCTGAGACGGCTAATTAGAGGGTCTGTCTGTGCCACTAAGGTGCTGATAGCTCCAGTGGTCATTTTGTTGGTCATGGTGCTCGGAGCTTTCGCACTGGTGATAGGTAACACAATTATACAcgtgaacacacacatgcacaaaaaaatcaGGGTGAAGCTCCAGCGAGAGTGGCAACCCAAAATCAGCTAAATGGTTTGACTATATTACAGATATTTTCTTCCACACAGCAAAGCAGGTCCACTCTCTATGCAAAAATAACAAACATAATCATGCCACAAACTTTATATTGGCATGCATGTCAGTCATTCTCAGTTATATAAAGAGAAGTAAACTGCCAAAGCTTTAGATCCAAATTATCACTCTCTGGGTGACTGGCTTTTATTTCCTGAAACTACATTTACTAGTAAAATCATCCAGCTGCACTCTGTGAGCACTCCGTCAGACAGGGATGTGAACTATTGATGCCTTGGCTGAACTGTAATTAGTGTTAATCTCTTTCCCATGTCTGTGCGTCTGACAGATGATCCGCTGCGGGCTAACATGCCGTAATGGAAGAATCACATTTATTGTCATCGTTATTAGAATCAgtgctgtgctgctgctgctgtcttttTCAGCCTAATTAACATACACATCCAGTATGCCAAATATGTAGGCAGTTTGCTATAAGATAGAATAATCAAATCCATATAGAAAACTCATCAGAGCTTGACATTGACAGATAATTCAAAGATTTACATTGTACATTAATTAATTGGTAATTCAAATTAGTATCAATTGAAACAAGGTTTAAATCCATCTTTCTCCTCACTTCCGCTTCATCTTTACAACCACCTTCCCTGTCTGCAGGTTTGGTAGTTTTCCCGGTCTACTATGTGTgtaagaggaggaagaagcagCGCACACAGGGCTCCGGACGGTGGATCTGACTGCAACCTGCACTGCatctagaacacacacacacacacacccccacacacacaccccacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagacagcttaAAAGACGAAGCCCGCATCTCCTCAGGGATGAACACGCCTGCCTGAGTCATCGCAAAAGTCTGAGAGGAACATCACGCAATTAACAATGGTGAATGGAGTTTTTAAGATGGAAGGAAGTATATAAACATATGAAGGACGGCCTGGATAATCATACTTCATCACGCAGAATATTTGTATTTCAGTAGACCGCTGCTGCAAAAGAAATGCTGGATATtcaagaagaaaaggaaaagaaaatgctaATTTAAACTAACAAATTTTTTCTTCAGATGATGGTTGACATGTGTTGCAATCCCCTTAAATCTCCACTAAATTTAACAGCATTGAACTTTCTTGCTGGCCACCTTTTGTCCCGGGCACAATACAGGAAGTTTCAGCAGTGTACATTTGACAAACGTTAGCTTGGAGCCCGTCAGTTAGCCTGATATGATGACATACTGTTGAATATTGTggatgaaagttttttttttaaaggtttgacAGTGGTGGATACAATTTGACTTGATAAACACAGACTGCTGGAAAATGGGAGGAGGACCTCACAGACGAATAATAGAGAAATGTGAGGAAATCTAATCTTCTTGTTGAACTTTTGCAAACGCTTCTTCAGTCATTTGTCAAAAGTGCAAGCTGGAAACTGAATTCAGGACCAAGCCATGATGGAAAAAAATGAGTTCTCACAGATGCAACAAAGCTGACATTGAATTTGTGCAATCTTCATCGAAAATTTGGACATTTGGAGTAAGCACACAGTATTCAAAATAATATGAAAGGACTTAATTTGGACGGATGGAAGGATGACACGTTACTATTCTTGGCTTTCCTGGATAACCTCGACTCTGCCTCAAGCTTTTGCTAGACAGAGTGAAAGTTGGGTCCTGTGTCCCCACCCTAAGAGTGACACCTAGTTTCAAAGGCCACACCAACCttagctttaaaaaaaggtgtCCTGTTTGCAACAAATATTAAGCCCACTGaccccttaaaggtcccatgacatggtgctctttggatgcttttatatagaccttagtggtcccctaatactgtatctgaagtctctttcccaaaattcagccttggtgcagaattac

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K11977 RNF217, IBRDC1; E3 ubiquitin-protein ligase RNF217

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249948 lncRNA upstream 293257 16045809 ~ 16047681 (+) True G184584
TU249901 lncRNA upstream 413276 15926071 ~ 15927662 (+) True G184540
TU249893 lncRNA upstream 419140 15914645 ~ 15921798 (+) False LOC120546249
TU250006 lncRNA downstream 26852 16379507 ~ 16381781 (+) False cenpw
TU250010 lncRNA downstream 48253 16400908 ~ 16404077 (+) True G184628
TU250011 lncRNA downstream 49547 16402202 ~ 16404077 (+) False G184628
TU250017 lncRNA downstream 59021 16411676 ~ 16413501 (+) True G184633
TU250220 lncRNA downstream 140539 16493194 ~ 16494494 (+) False LOC120546561
XM_039782626.1 mRNA upstream 5523 16248094 ~ 16335415 (+) True nkain2
XM_039781210.1 mRNA upstream 214024 16109352 ~ 16126914 (+) True med23
XM_039781211.1 mRNA upstream 214024 16109352 ~ 16126914 (+) False med23
XM_039781072.1 mRNA upstream 298699 16016975 ~ 16042239 (+) True coq8aa
XM_039781073.1 mRNA upstream 298699 16025160 ~ 16042239 (+) False coq8aa
XM_039781851.1 mRNA downstream 4904 16357559 ~ 16375214 (+) False tpd52l1
XM_039781853.1 mRNA downstream 4905 16357560 ~ 16375214 (+) False tpd52l1
XM_039781849.1 mRNA downstream 4916 16357571 ~ 16370618 (+) False tpd52l1
XM_039781839.1 mRNA downstream 4917 16357572 ~ 16375214 (+) True tpd52l1
XM_039781840.1 mRNA downstream 4917 16357572 ~ 16375214 (+) False tpd52l1
TU249895 other upstream 372815 15914645 ~ 15968123 (+) False LOC120546249
XR_005636865.1 other upstream 624654 15694944 ~ 15716284 (+) False dpf3
XR_005636866.1 other upstream 624654 15694944 ~ 15716284 (+) False dpf3
TU249859 other upstream 677364 15660573 ~ 15663574 (+) True rhov
TU249798 other upstream 1022102 15301925 ~ 15318836 (+) True G184458
TU250012 other downstream 46783 16399438 ~ 16402103 (+) False G184628
XR_005636928.1 other downstream 412890 16765545 ~ 16776601 (+) False si:ch211-57i17.1
TU250355 other downstream 473039 16825694 ~ 16833314 (+) True G184859
TU250543 other downstream 940999 17293654 ~ 17295701 (+) True G184996
TU250558 other downstream 989182 17341837 ~ 17365977 (+) False map7b

Expression Profile