RNA id: XM_039782564.1


Basic Information

Item Value
RNA id XM_039782564.1
length 3911
RNA type mRNA
GC content 0.50
exon number 5
gene id lrfn2b
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 5389153 ~ 5588237 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGCACGGAGAGGATACAGGCTGCGGGTATTTGCAGTCACATCAAAACGCAGACGACAGCACAGAGAGCGAAGAAGAAAACATCTTTTTATTTCCCTCCGCGAGTATGTTGTCTCGTTTCTTCTCATAAGCGGTGTGAGTGGATATTTATTTAAACGCGTAACGGAACAGAAATGTCTGACTCCgtgaaaagtttatttatgCTGTACCGTATTCTCAAACTTAAAGCAGCCAGCATTTGGAGCTGATCGATGCGAGGAGCCAGTGAAGTGGTTTGCTCGTCAGTAGTGTGGTCGGAGCCGGCTGTGAGCGGCAGAGCGGTGCGCGCCTCgctagtttcttttttttacgcGTAAAGGGAAAAGAGTGATCAGGCAATACCGGGAATCCAAGACGAGAAATGGAAATTACAAACGGTATTGGAATTAATGTCgaaaggaaaacaacaacaatgcctTGATCATCGACTGCATCTCCCGGACAGAGAACCCGTTTAAAAAACGCCTGATAAAAGAGAGATGGCCTTGAATTCCGTTGTAAAGCTGTATCCCTGCAACCACATCTCCACTATTAACAGGTCGTCTTTTTCTGTTGGTGTGGGGGTGAGAGGCGTGGAGGCTGTGGTTAGCGGGCTGAGCCCGTGAGTGAACCTATGGCAGAGAGACAGCACAGTGCAGGTTCCTATGTATGAGTCTACCATGGACCACATTATCTGCTGCCTGCTGGTCCTGGGAGCCACAGTGATGATCACCCATGCGTGCCCCAAGTACTGTGTATGCCAGAATCTGTCCGAATCCCTGGGGACATTGTGTCCCTCCAAAGGCCTTCTTTTCGTGCCTCTGGACATTGACCGCAGCACGGTGGAGCTCCGTCTAGGAGGCAACTACATCCTCCGCATTACGCAGCAGGACTTTGCCAATATGACCGACCTGGTTGATCTGACACTCTCCAGGAACACAATCAGTTACATTCAGCCCTTCTCTTTTGGCGACTTGGAAACACTGCGCTCGCTTCATCTGGACAACAACCGCTTGATAGAACTAGGCCCTGATGACTTGCGAGGCTTGGTCAATCTGCAGCACCTCATCATGAACAACAACCAACTGGGCCGCATTTATGACAAGGCCTTTGAGGACCTGGCACCTTCCTTGGAGGATTTGGATCTCTCCTACAACAACCTGGTGTCTCTGCCATGGGACTCAGTCCGCCAGATGATTAACCTGCACCAGCTTAGTCTGGACCACAACCTGTTAGATTTCATTCCAGAGGGCACTTTCACTGACCTGGAAAGGCTGGCGAGATTGGACATGACCTCAAATCGATTGCAGAAGCTACCCCCAGACCCTATCTTTGCCCGTGCCCAGGACTCAATGATCCTGACTACACCCTATGCTCCCCAGCTGTCCCTAAGTCTAGGTGGGAATCCACTGCACTGCAACTGTGAGATGCTGTGGCTGCGGAGGCTTGAGAGAGACGACGACCTGGAGACTTGTGCCTCCCCTCCTGCCCTTAAGGGTCGTTACTTTTGGAATGTGAAGGAAGAGGAGTTTTTGTGTCAGCCACCTCTTATTACCCAGCACACCCACAGAATGCTGGTCTTGGAGGGCCAGACAGCCAGCCTAAGGTGCGAAGCAACTGGAGACCCTTCTCCTACCATCCACTGGATCTCCCCTGATGATCGGCTGCTTGGCAACACCTCCCGAACTGCAGTGTACAGCAACGGAACCCTAAGCATCACCATCACCACCTCCAAGGACTATGGCACCTTCACCTGCATTGCCGCTAATGTGGCTGGGGAGTCCACCGCCTCTGTGGAGGTGTCTATCATTCAGCTCCCCCACCTAAGCAATGGCACTGGGCAGCCAGCACCACCAAAGTCACGCCTCTCTGATATCACAGGGACCACCAGGATCAGCAAAGGGGCTCCCAAGAGCCAACCAGAGAGGACTGTCTCCGCCACCGAGGTGACAGCTGTTTCAGCACTGGTCAAGTGGACAGTGAGCAAATCAGCTCCCAAAGTGAAGATGTACCAGCTCCAGTACAACTGCTCTGATGATGAAGTTCTGATTTACAGGATGATCCCTGCCTCCAGCAAAGCTTTCTTGGTGACCAATCTGGTGTCGGGGACCCGCTACGATTTGTGTGTGCTGGCCGCCTGGGATGACACCGCCACCACACTCACGGCAACCAACGTCGTGGGCTGCACCAATTTCTTCACCCAGGACAACTACCAGCAGTGCCAGTCTCTGCCCAGCCAGCTGCTAGGCGGCACCATGATCCTGGTGGTGGGGGGCATCATCGTAGCCACCCTGCTCGTGTTCATCGTCATCCTCATGGTGCGCTACAAAGCTGCAGACACTGAACCCCCAGTGGGAAAACTGACCGTCagtgacacacactctcagaccAATGGGGGTCACATGCTCCAGTGTCGGCCTCAGCCTGAGCCAAAGGTTAAGGCCAAAGTGACTCTGCAGGACGAGGTGGTGCAGTTCAAGTGTGGCTCCCTTCAAAGCAGCctcacctcctcttcctcatcctcaGGCTCCATGGCGGGGGGCTCGTACAGCCCCAACAGCACACTTGCCAACATTTTGAGATCAGCTCCCTCCAAGCCCCGGACCAACCTGGACCACCTGCTCGGGGCCTTCACCTCGCTGGAGCTGCGGGCGTTACAGGGACGCGACCCAGGAGCCTCTAGTAGCGCTGCCATGACAGCAGGGAAACCCCACACAGACAGGGAGCCGCTGCTGGGCCGGACACTGGACTCCAGCCTCAGCCGGCTCCTCATGCTACCTGTGGACTCCAAGCCAAAAAGGAGCCAGTCCTTCGATATGGGAGACATAACAGCCACCGGGGCCACTCAGCTGTGCAACAAACCACGCAGGATCAGCAGTATCTGGACTAAGAGGAGCCTGTCTGTTAATGGCATGCTGCTGCAgtgtgaggaggagggggacacGGGAGGGAGCAAGGGGACAAATGACAACGCTGACTGGGTGATGGAGAGTACTGTCTAGGAAAGATGGAGGACTGTCACACTGTCAAACACTGCCCAAAGGGACGGCCCACAGCCATGCCAAGACAGGCCCGCTGGTCTAAGAGCCTTTGTCCTGCATGAAGCACACTCATATTCATCCTTTCCACTCTATCACTCAGACTCAAGTGGGACAAGACGAGGGGTTTTCACACTCATAGCTAAATACAGACTTTCGGAATAAGACCTTTGGATTGTTTTGCCTCACACTTTGTACAGAGATGGATTAAAATGGCTGGTCAGCCATTAAGAGCCGAAGGGAAATGAAAGAGCAGTGCCGTCTGTTATAGAAATATGGGATCACCATGGACTGctattatactgtatacatttaaagtatgtaatgaaattaaagttttatattttttattttgctggTCAAACACATGATCCACTCGTCTCTGCCTTGACACAAAAGCAAGGTATGACCAGTGGTTACACTATAAATCTTCTACTGTAAATTCAACCTCATTTTGGTTACCCACTGATGCAGTTTAACCATCTCTGACTGAATGGTGAAGTATATATACATAGATGTGATGCTTTGATTCATGAAGATTTAAGAAAAAAGATTTATTGACAAAGCTGTATGTGAATATATTTACTTTCTATACGGAGTATATATTTGAGGGGTCACTCAATAATTCTGTATGCTTATTATATCACATTTTATGTGATTGCATAGATTATAAACCCATCATCTCCTAAACTTTGGCTGCAATGTATGTGAAAACTCAGTTAATTGTTTCAAAAAATGCCAAATTATTAAAGTGGAAAGTGGCGCAATGCGTAGGATTTTCCAAAACAATTAGGCCTGTTTAGATTATGTACATTTGGTCCAAtaggaaaataaatgtttttatggGTAATTTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU247143 lncRNA downstream 970 5386807 ~ 5388183 (-) True G182413
TU247119 lncRNA downstream 76681 5311520 ~ 5312472 (-) False zgc:112001
TU247093 lncRNA downstream 152945 5235833 ~ 5236208 (-) True G182368
TU247092 lncRNA downstream 162483 5226393 ~ 5226670 (-) True G182367
TU247083 lncRNA downstream 243433 5145512 ~ 5145720 (-) True G182358
TU247174 lncRNA upstream 79480 5667717 ~ 5667916 (-) True G182441
TU247176 lncRNA upstream 108219 5696456 ~ 5696803 (-) True G182443
TU247227 lncRNA upstream 189015 5777252 ~ 5777743 (-) True G182472
TU247259 lncRNA upstream 322458 5910695 ~ 5911116 (-) True G182501
TU247266 lncRNA upstream 342426 5930663 ~ 5955950 (-) True G182507
XM_039780916.1 mRNA downstream 75438 5311506 ~ 5313715 (-) True zgc:112001
XM_039782918.1 mRNA downstream 109433 5259465 ~ 5279720 (-) True LOC120547345
XM_039782808.1 mRNA downstream 135453 5247945 ~ 5253700 (-) True LOC120547277
XM_039780973.1 mRNA downstream 265372 5115179 ~ 5123781 (-) True LOC120546193
XM_039781007.1 mRNA downstream 495096 4871142 ~ 4894057 (-) False LOC120546227
XM_039781983.1 mRNA upstream 398200 5986437 ~ 6009440 (-) False gopc
XM_039781982.1 mRNA upstream 398200 5986437 ~ 6009439 (-) False gopc
XM_039781981.1 mRNA upstream 398200 5986437 ~ 6009439 (-) True gopc
XM_039781997.1 mRNA upstream 482309 6070546 ~ 6073220 (-) True LOC120546792
XM_039781989.1 mRNA upstream 644505 6232742 ~ 6268926 (-) False cgrrf1
TU246982 other downstream 585683 4745773 ~ 4803470 (-) False smim8
TU246981 other downstream 585683 4798921 ~ 4803470 (-) False smim8
TU246980 other downstream 585683 4800911 ~ 4803470 (-) True smim8
unassigned_transcript_1027 other downstream 1210213 4178869 ~ 4178940 (-) True trnad-guc_28
unassigned_transcript_1024 other downstream 1214127 4174955 ~ 4175026 (-) True trnad-guc_27
TU247229 other upstream 202052 5790289 ~ 5792938 (-) True G182474
TU247260 other upstream 323075 5911312 ~ 5911909 (-) True G182502
TU247550 other upstream 1112254 6700491 ~ 6701117 (-) True G182764
unassigned_transcript_1029 other upstream 1438905 7027142 ~ 7027214 (-) True trnak-uuu_18
unassigned_transcript_1030 other upstream 1441737 7029974 ~ 7030046 (-) True trnak-uuu_19

Expression Profile