RNA id: XM_039782567.1


Basic Information

Item Value
RNA id XM_039782567.1
length 4043
RNA type mRNA
GC content 0.51
exon number 6
gene id lrfn5b
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 14509448 ~ 14524171 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gaggggtggggggcgcATATTATGGCAGCAACCTTTCAGTCAATCTGGATTAAGTCGCACTGAGCCCTGCGTCGCCAGCAAAAGCCCGTGAAAGCGATCCGAACATCTGGCTGGATTCAGCACAGCAGTAGTCACTCACAACGCTGTAGATAATAAAGCAGCCTGTCGCTTCAAAGGCGTTTTCTCTTCTGGAGGTGCAAACAGGCGGATGCGCAGTACAGAGGCGATCCCGCACAGCTGCAACCTCGCAGCCACAACGGGACCCTTCGGCTTGCGTTTTCcagtatttctttttattttatttttttttaacgaaaGGGGGAAGCGGAGTTATAGGCTACATCTCCGATGTGAGGGGATCGGAGAGGAGTCGTCCTTTATATGCTGGTCATGGATTTCTTGAAGGGCATCGCTGGTATCGCAGGCCGTCACATGTTCTAGGAGCTGAGACGCGTGTTTCGGGACACCTGAATTATCTCCAAGAGGCACCGTCGGTCCCATTTTAGACACGCCGCTCTCAGAATGCTCTCAGCCCCCCTGGGAGAAAAAATGCTCAAACACACCCTCCTCTGACTTGGCTTGATGTTTCATCTACAAGgtGCGTTAACCTGACTGAAAAGCCAAATGGAGTCTCTCCTGGTTTACCTGATAGTCCTCGGTGTGGCTGTGAAGGCCCACAAAGTTCAGGTCTGCCCCAAACGCTGTGTCTGCCAAGTGCTTAACCCCAACCTGGCGACTTTGTGCGACAAAAAGGGGCTTCTTTTTGTGCCCCCGAACATCGACAGGCACACGGTGGAGATGCGTCTTGGGGATAACTTTGTAACCAGCATCAAACGCAAAGACTTTGCCAACATGACCAGGCTGGTGGACCTGACCCTCTCTCGGAACACTATCGGCTCCATCGCACCTCACGCTTTCAAAGACCTGGAGAACTTACGAGCCCTTCACCTTGATAGCAATCGGCTGTCCCGCATCCTCAACGACACCTTCAGCGGCATGTCCAAGCTGCACCACCTCATCCTCAACAACAACCAGCTCACCCACATCCAGATTGGGGCATTTAATGACCTGACTGCACTGGAAGAGCTGGATTTATCCTACAACAACTTGGAAAGTGCGCCATGGGTGGCCATTCAAAGGATGCCCAGTCTCCACACTCTCAATTTGGACCACAACATGCTCAGCTACATCCCAGAAGGCACATTCTCTGGGCTACAGAAGCTCAAGAGGCTGGACGTAACTTCCAACAAACTCCAGAAGCTTCCTCCTGACCCTATTTTCCAAAGAGCAGGGGTCCTGGCCACCTCTGGGATAATGGGGCCTATGTCGTTCGCGTTGAGCTTCGGAGGGAACCCGCTGAGGTGTAACTGTGAGCTGCTCTGGCTGCGGAGGTTGCGGAGGGAGGATGATCTGGAAACCTGTGCCTCACCGCAACACCTCGCCGGACGCTATTTCTGGACTGTTTCAGAGGAAGAGTTCCTGTGTGAGCCTCCTCTCATCACCAGGCACTCTCAAGAGCTGCGAGCTTTGGAGGGTCAGAGTGTGACTCTGCGCTGTAAAGCCAGGGGTGACCCCGACCCTATTATCCACTGGATCGCCCCCGACGGACGCCTTATGTCCAATTCCTCTAGGGCCGCGGTCCACACAGACGGCACGCTGGACATCCTCATCAGCACTGTCAAGGACTCTGGTTCCTTCACCTGCGTGGCCTCCAACCCGGCAGGTGAGGCCCAGCAGACGGTGGATCTGGTCATCACTAAACTCCCTCACATCACCAACAACACAGTCGCGGAGCAGGAGCCCGACCCCGGATCATCAGATATCGCCACAGTGACCAAAACTGGGGCAGAGGTGGGGGGGTTGCCTCTGGGGAACGCCAAGACAAGCCAGGAGAAGAAAGTAGTGATTGCTGAGGCCACGTCCACCTCGGCCCTGGTCAAGTTTAACTTCCAGACGAGTATTCCTGGAATACGCATGTTTCAGATCCAATATAATGGCACCTATGATGATTCACTGGTTTACAGaATGATACCCCCGACTAGTAAGAGCATCCTGGTAAACAACCTGGCGGCTGGTACGCACTATGACTTGTGTGTGCTGGCCATCTACGATGACCAGGTGACCTCGCTGACCGCCACCAGGGTGATAGGATGCATCCACTTCACCACAGAGCCGCAGTACCTGAGATGCCATTTCATGCAGTCCCAGTTTCTTGGCGGCACCATTGTGGTTATCATTGGAGGGATTATTGTGGCCTCAGTGCTCGCTTTTATCATCTTCCTCATTGTGCGCTACCGGGTGTGTAACCAAGGAGATGCAGATAAGGCTCTAGAGATGGGGGATATTCGGTCGCTGAGCAGTGATGGACAGCTACAGGGCTGTGGGATTCCCAAGTCCCTCTCCAAGCAGGTCCTGCGTCCAGAGAAGAATGACAAGGAGTGCCTCAGAATTGCCCTGCCGCCCACCGAGCCAGCCAAGCAGCGTCCACCAGTCGCCGTAGCCACCACCAAACCCTCCGTCCCTGACTGCACTGTCTCTACATCCGCAGCCAGCCACAGCTGGCACCCGGCGTCCCCGGGCGCTCCGAGGCCCAAACGTTTCAGTGCTCCGTCAAAACCCTTAGAGGCTCGCCGAGCTGAAGCTCAGGTGGACGTCGAGCTCGATAACATGAACCGGAATAACTCGTCAGAGGTTAAAATGACCACCGCCGTCACTCTGGCTGTTCCCGGCCAGCCCACCAAATGGACTGCTGTTCCCAGGGTTCAGCGTCCCCAACAGGCCGCTCGGCATTACATGACTGTGCCCGCAGGGGGAGTGAGAGTGAACCGCAGGCACTCCCTTAACGCAGACTCATATATGGAGCGCTTCTACGTGGCCTACCCCAAACCTGGGGCCAGTCTGCGCTCCAAGCGGAGCCTGTCGATGAGCGGAGAGCTGCCGCAGCTGGAGAGCACAACAAACATGCACCGGGCCAGGGACAAGCTCTCCAGGTCTGAGTGGCTTCTGGAGAGCACTTTATGATTTGGAGTTTATGACCCGCGTTCTCTTGTTTTCTTGGATTGGATTTGTAGCCCGTTGTGGAGCAGACAGGGATTTTATGCCTTGTTTTGAGCTTTTGTGCGCTCTATTGAGGGACCTGTAAGCTTCTCTCATATATATGGGGGCCAGGCAGGCATAGAGGGTTATGGGACACGTTTCACATTTCTTTTGTACCTTATAACCTTTCAAAGTCGTCTTTATAACGACATTTGATCAAACTTTGACGAAAggcacaacaatgtataaaacaaCTTCATGTACAAAAATGTTTAGTTGTGTGAGATGCTGTATATCTCAATACAACCATAAGTGTTCATGTGGTATTGAATGCAGTAACctggacatactgtataataacaAAGAAAGAGACATGCAGAGGGTTGGCTTATTATACTCGCAGTCTCATTGCCTGTAACTTAAAGTGATACAATCTCTGTAGACTTTGAACATGATTCTTGTCTCCAGCTACAGACAGACGGTGACATGTCTTAATTACCTTGGCTTGAGATTACGAATGTGCTTTACATCCCAGAGGTGTTGGAACAGAATGTAGTAGACAGACAGCGCTCCATCTTTTCATCGCGACACCCCCCAGACACAGCACAATGCAGTATTTTTGTGGCACAAGTCGACTCAGCCTAATACTGCCCTCCGGTTTGAATCGATACATTTTTATCACACAATTACATAAAGACTCAACTCTGATAGGATTCCTGTCGTGACTGATTTGAGCAACAATTGAACCAACACCAACAGCATGACAGGTGCAGGAAGTAATCTGATATTACGCGTGGATGGGATCCAGAGAGGAGTGGTTCATTTCCATATTTTTTACTGACTGACATTATCAAGTCACGCCGATGACAACCGTTGTAAATTTACTTGTCGATGTAAGAGAAATGATAATCACAAGTATGGGAGGACGTCAGCTCTTGATTTTGCTGTTGTTTCTGTTTGATGTTTACCAGTATAAATAAACCAGTGATAAAAGGGACAAACTCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249589 lncRNA downstream 15880 14491099 ~ 14493568 (-) True G184306
TU249570 lncRNA downstream 70493 14432231 ~ 14438955 (-) False G184295
TU249571 lncRNA downstream 70493 14432231 ~ 14438955 (-) True G184295
TU249567 lncRNA downstream 77276 14427804 ~ 14432172 (-) True G184293
TU249565 lncRNA downstream 84601 14423153 ~ 14424847 (-) True G184292
TU249640 lncRNA upstream 131486 14655657 ~ 14656247 (-) True G184346
TU249642 lncRNA upstream 142964 14667135 ~ 14667581 (-) False LOC120547045
TU249658 lncRNA upstream 147723 14671894 ~ 14677060 (-) True G184356
TU249666 lncRNA upstream 165135 14689306 ~ 14689940 (-) True G184360
TU249654 lncRNA upstream 175513 14699684 ~ 14702181 (-) True G184354
XM_039781332.1 mRNA downstream 121005 14387520 ~ 14388443 (-) True LOC120546407
XM_039781331.1 mRNA downstream 128271 14380014 ~ 14381177 (-) True LOC120546406
XM_039782071.1 mRNA downstream 130893 14360513 ~ 14378555 (-) False magl
XM_039782070.1 mRNA downstream 130893 14360513 ~ 14378555 (-) True magl
XM_039782359.1 mRNA downstream 150058 14335639 ~ 14359390 (-) False LOC120547016
XM_039782477.1 mRNA upstream 1064 14525235 ~ 14529353 (-) True LOC120547074
XM_039781696.1 mRNA upstream 23867 14548038 ~ 14560460 (-) False znf410
XM_039781695.1 mRNA upstream 23867 14548038 ~ 14560460 (-) True znf410
XM_039782750.1 mRNA upstream 37236 14561407 ~ 14566531 (-) True cipcb
XM_039782747.1 mRNA upstream 47209 14571380 ~ 14612946 (-) True naa30
TU249578 other downstream 11078 14472201 ~ 14498370 (-) True G184299
TU249319 other downstream 1018320 13481924 ~ 13491128 (-) False mfsd2b
TU249306 other downstream 1041383 13458616 ~ 13468065 (-) True fkbp1b
TU249194 other downstream 1293624 13206307 ~ 13215824 (-) False hmgn3
TU249614 other upstream 47584 14571755 ~ 14579169 (-) False naa30
TU250064 other upstream 1264743 15788914 ~ 15791558 (-) False si:dkey-177p2.18
XR_005636881.1 other upstream 1966479 16490650 ~ 16517872 (-) False snap91b
XR_005637006.1 other upstream 2305625 16829796 ~ 16835983 (-) False gpatch2
XR_005637059.1 other upstream 3237785 17761956 ~ 17762038 (-) True LOC120547356

Expression Profile